Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:9658534-10468549

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr16057 2 9681793 to 9681804 11 + TSS region transcription start site region 16057
Tssr16058 2 9681807 to 9681818 11 + TSS region transcription start site region 16058
Tssr22541 2 9691629 to 9691634 5 - TSS region transcription start site region 22541
Tssr16059 2 9693726 to 9693730 4 + TSS region transcription start site region 16059
4930554D03Rik 2 9830297 to 9831242 945 unclassified gene RIKEN cDNA 4930554D03 gene
Tssr22542 2 9834217 to 9834223 6 - TSS region transcription start site region 22542
Gata3 2 9857078 to 9878612 21534 - protein coding gene GATA binding protein 3
Tssr22543 2 9857430 to 9857435 5 - TSS region transcription start site region 22543
Tssr22544 2 9857571 to 9857583 12 - TSS region transcription start site region 22544
Tssr22545 2 9863313 to 9863316 3 - TSS region transcription start site region 22545
Tssr22546 2 9863560 to 9863577 17 - TSS region transcription start site region 22546
Tssr22547 2 9867553 to 9867557 4 - TSS region transcription start site region 22547
Tssr22548 2 9868834 to 9868845 11 - TSS region transcription start site region 22548
Tssr22549 2 9868860 to 9868871 11 - TSS region transcription start site region 22549
Tssr22550 2 9868873 to 9868885 12 - TSS region transcription start site region 22550
Tssr22551 2 9869404 to 9869413 9 - TSS region transcription start site region 22551
Tssr16060 2 9869617 to 9869622 5 + TSS region transcription start site region 16060
Tssr22552 2 9869803 to 9869827 24 - TSS region transcription start site region 22552
Cpgi11182 2 9874396 to 9875116 720 CpG island CpG island 11182
Tssr22553 2 9875390 to 9875404 14 - TSS region transcription start site region 22553
Tssr16061 2 9876114 to 9876137 23 + TSS region transcription start site region 16061
Cpgi11183 2 9876976 to 9877718 742 CpG island CpG island 11183
Gm13256 2 9877256 to 9878869 1613 + antisense lncRNA gene predicted gene 13256
Tssr22554 2 9877443 to 9877459 16 - TSS region transcription start site region 22554
Tssr22555 2 9877836 to 9877850 14 - TSS region transcription start site region 22555
Tssr22556 2 9877884 to 9877887 3 - TSS region transcription start site region 22556
Tssr22557 2 9877986 to 9878016 30 - TSS region transcription start site region 22557
Cpgi11184 2 9878062 to 9879780 1718 CpG island CpG island 11184
Tssr22558 2 9878155 to 9878194 39 - TSS region transcription start site region 22558
Tssr22559 2 9878360 to 9878369 9 - TSS region transcription start site region 22559
Tssr22560 2 9878438 to 9878449 11 - TSS region transcription start site region 22560
Tssr22561 2 9878467 to 9878481 14 - TSS region transcription start site region 22561
Tssr22562 2 9878580 to 9878607 27 - TSS region transcription start site region 22562
Tssr22563 2 9879537 to 9879549 12 - TSS region transcription start site region 22563
Tssr22564 2 9879563 to 9879586 23 - TSS region transcription start site region 22564
Tssr22565 2 9879589 to 9879611 22 - TSS region transcription start site region 22565
Tssr16062 2 9879747 to 9879764 17 + TSS region transcription start site region 16062
Tssr16063 2 9880453 to 9880483 30 + TSS region transcription start site region 16063
Tssr22566 2 9881043 to 9881050 7 - TSS region transcription start site region 22566
Cpgi11185 2 9881071 to 9881645 574 CpG island CpG island 11185
Tssr22567 2 9881120 to 9881155 35 - TSS region transcription start site region 22567
4930412O13Rik 2 9881252 to 9883921 2669 + protein coding gene RIKEN cDNA 4930412O13 gene
Tssr16064 2 9881503 to 9881512 9 + TSS region transcription start site region 16064
Tssr22568 2 9881962 to 9881985 23 - TSS region transcription start site region 22568
Cpgi11186 2 9882087 to 9883314 1227 CpG island CpG island 11186
Tssr16065 2 9882123 to 9882134 11 + TSS region transcription start site region 16065
Tssr16066 2 9882144 to 9882153 9 + TSS region transcription start site region 16066
Tssr16067 2 9882196 to 9882208 12 + TSS region transcription start site region 16067
Tssr16068 2 9882216 to 9882227 11 + TSS region transcription start site region 16068
Tssr16069 2 9882502 to 9882546 44 + TSS region transcription start site region 16069
Tssr16070 2 9882622 to 9882646 24 + TSS region transcription start site region 16070
Tssr400 2 9882652 to 9882661 9 + TSS region transcription start site region 400
9230102O04Rik 2 9883041 to 9889540 6499 - protein coding gene RIKEN cDNA 9230102O04 gene
Tssr22569 2 9884217 to 9884230 13 - TSS region transcription start site region 22569
Tssr22570 2 9884337 to 9884345 8 - TSS region transcription start site region 22570
Tssr16071 2 9884457 to 9884475 18 + TSS region transcription start site region 16071
Tssr16072 2 9884486 to 9884497 11 + TSS region transcription start site region 16072
Tssr16073 2 9884522 to 9884533 11 + TSS region transcription start site region 16073
Tssr22571 2 9887730 to 9887744 14 - TSS region transcription start site region 22571
Tssr22572 2 9887747 to 9887769 22 - TSS region transcription start site region 22572
Tssr22573 2 9887775 to 9887795 20 - TSS region transcription start site region 22573
Tssr22574 2 9887824 to 9887842 18 - TSS region transcription start site region 22574
Tssr22575 2 9887952 to 9888000 48 - TSS region transcription start site region 22575
Cpgi11187 2 9888929 to 9890016 1087 CpG island CpG island 11187
Tssr22576 2 9889535 to 9889544 9 - TSS region transcription start site region 22576
Tssr22577 2 9889586 to 9889596 10 - TSS region transcription start site region 22577
Tssr22578 2 9890026 to 9890035 9 - TSS region transcription start site region 22578
Cpgi11188 2 9896014 to 9896384 370 CpG island CpG island 11188
Gm13262 2 9906178 to 9914678 8500 + antisense lncRNA gene predicted gene 13262
Tssr16074 2 9906283 to 9906291 8 + TSS region transcription start site region 16074
Gm31290 2 9918177 to 9922384 4207 + lncRNA gene predicted gene, 31290
Tssr22579 2 9951812 to 9951833 21 - TSS region transcription start site region 22579
Tssr22580 2 9952629 to 9952661 32 - TSS region transcription start site region 22580
D2Mit233 2 9955306 to 9955454 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 233
Gm31200 2 9965785 to 9968453 2668 + pseudogene predicted gene, 31200
Tssr22581 2 10028957 to 10028974 17 - TSS region transcription start site region 22581
Cpgi11189 2 10047596 to 10048876 1280 CpG island CpG island 11189
C630004M23Rik 2 10047838 to 10049519 1681 + unclassified gene RIKEN cDNA C630004M23 gene
Tssr22582 2 10048580 to 10048621 41 - TSS region transcription start site region 22582
Taf3 2 10048596 to 9914552 -134044 - protein coding gene TATA-box binding protein associated factor 3
Atp5c1 2 10056030 to 10080518 24488 - protein coding gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Tssr22583 2 10063534 to 10063549 15 - TSS region transcription start site region 22583
Tssr22584 2 10064427 to 10064453 26 - TSS region transcription start site region 22584
Tssr22585 2 10068666 to 10068677 11 - TSS region transcription start site region 22585
Gm23608 2 10075653 to 10075780 127 - snoRNA gene predicted gene, 23608
Cpgi11190 2 10079913 to 10081017 1104 CpG island CpG island 11190
Tssr22586 2 10080154 to 10080166 12 - TSS region transcription start site region 22586
Tssr16075 2 10080182 to 10080186 4 + TSS region transcription start site region 16075
Tssr22587 2 10080405 to 10080446 41 - TSS region transcription start site region 22587
Tssr401 2 10080488 to 10080499 11 - TSS region transcription start site region 401
Tssr16076 2 10080575 to 10080595 20 + TSS region transcription start site region 16076
Kin 2 10080599 to 10092701 12102 + protein coding gene Kin17 DNA and RNA binding protein
Tssr16077 2 10080600 to 10080618 18 + TSS region transcription start site region 16077
Itih2 2 10094591 to 10130683 36092 - protein coding gene inter-alpha trypsin inhibitor, heavy chain 2
Tssr22588 2 10094823 to 10094828 5 - TSS region transcription start site region 22588
Tssr22589 2 10097117 to 10097131 14 - TSS region transcription start site region 22589
Tssr22590 2 10098005 to 10098023 18 - TSS region transcription start site region 22590
Tssr22591 2 10102815 to 10102822 7 - TSS region transcription start site region 22591
Tssr22592 2 10105169 to 10105182 13 - TSS region transcription start site region 22592
D2Mit4 2 10108439 to 10108628 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 4
Tssr22593 2 10116723 to 10116735 12 - TSS region transcription start site region 22593
Tssr22594 2 10117438 to 10117450 12 - TSS region transcription start site region 22594
Tssr22595 2 10119534 to 10119545 11 - TSS region transcription start site region 22595
Tssr22596 2 10119559 to 10119576 17 - TSS region transcription start site region 22596
Tssr22597 2 10119583 to 10119595 12 - TSS region transcription start site region 22597
Tssr22598 2 10123457 to 10123467 10 - TSS region transcription start site region 22598
Tssr22599 2 10126203 to 10126285 82 - TSS region transcription start site region 22599
Tssr22600 2 10130575 to 10130586 11 - TSS region transcription start site region 22600
Tssr22601 2 10130638 to 10130689 51 - TSS region transcription start site region 22601
Cpgi11191 2 10153470 to 10153880 410 CpG island CpG island 11191
Tssr16078 2 10153549 to 10153560 11 + TSS region transcription start site region 16078
Tssr16079 2 10153563 to 10153627 64 + TSS region transcription start site region 16079
Itih5 2 10153571 to 10256529 102958 + protein coding gene inter-alpha (globulin) inhibitor H5
Tssr16080 2 10153633 to 10153654 21 + TSS region transcription start site region 16080
Tssr16081 2 10165685 to 10165689 4 + TSS region transcription start site region 16081
D2Mit31.1 2 10243822 to 10243943 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 31.1
D2Mit31 2 10243908 to 10244044 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 31
5730405A10Rik 2 10276438 to 10277417 979 unclassified gene RIKEN cDNA 5730405A10 gene
Gm31496 2 10305663 to 10307590 1927 - lncRNA gene predicted gene, 31496
Cpgi11192 2 10311839 to 10312047 208 CpG island CpG island 11192
Gm39758 2 10317088 to 10320201 3113 - lncRNA gene predicted gene, 39758
Gm13261 2 10339283 to 10374041 34758 - lncRNA gene predicted gene 13261
Tssr16082 2 10365353 to 10365403 50 + TSS region transcription start site region 16082
Tssr16083 2 10370494 to 10370517 23 + TSS region transcription start site region 16083
Sfmbt2 2 10370510 to 10595253 224743 + protein coding gene Scm-like with four mbt domains 2
Tssr16084 2 10371265 to 10371288 23 + TSS region transcription start site region 16084
Tssr16085 2 10371351 to 10371355 4 + TSS region transcription start site region 16085
Cpgi11193 2 10371521 to 10371718 197 CpG island CpG island 11193
Tssr16086 2 10371609 to 10371614 5 + TSS region transcription start site region 16086
Cpgi11194 2 10372184 to 10372688 504 CpG island CpG island 11194
Tssr16087 2 10372336 to 10372347 11 + TSS region transcription start site region 16087
Tssr16088 2 10372426 to 10372497 71 + TSS region transcription start site region 16088
Tssr16089 2 10372551 to 10372564 13 + TSS region transcription start site region 16089
Cpgi11195 2 10373843 to 10374477 634 CpG island CpG island 11195
Cpgi11196 2 10374644 to 10375423 779 CpG island CpG island 11196
Tssr16090 2 10380551 to 10380556 5 + TSS region transcription start site region 16090
Tssr16091 2 10439875 to 10439879 4 + TSS region transcription start site region 16091
Tssr16092 2 10449084 to 10449104 20 + TSS region transcription start site region 16092
Gm22072 2 10465287 to 10465407 120 + miRNA gene predicted gene, 22072
Gm22677 2 10465760 to 10465867 107 + miRNA gene predicted gene, 22677
Mir466m 2 10466663 to 10466746 83 + miRNA gene microRNA 466m
Mir466f-1 2 10466944 to 10467037 93 + miRNA gene microRNA 466f-1
Mir669f 2 10467229 to 10467349 120 + miRNA gene microRNA 669f
Mir669e 2 10467495 to 10467613 118 + miRNA gene microRNA 669e
Mir669b 2 10467790 to 10467886 96 + miRNA gene microRNA 669b
Gm23578 2 10468069 to 10468172 103 + miRNA gene predicted gene, 23578
Mir669d 2 10468343 to 10468463 120 + miRNA gene microRNA 669d
Opfaq1 2 27132630 to 9671880 -17460750 QTL open field activity QTL 1