Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:96494926-100454931

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc4c 2 96318169 to 97631666 1313497 + protein coding gene leucine rich repeat containing 4C
Tssr19014 2 96834778 to 96834780 2 + TSS region transcription start site region 19014
4930445B16Rik 2 96987018 to 97083561 96543 - lincRNA gene RIKEN cDNA 4930445B16 gene
Gm17075 2 96999640 to 97000266 626 + pseudogene predicted gene 17075
Gm17076 2 97039912 to 97041300 1388 + pseudogene predicted gene 17076
C230086H14Rik 2 97108430 to 97110411 1981 unclassified gene RIKEN cDNA C230086H14 gene
Gm22957 2 97117414 to 97117536 122 + snoRNA gene predicted gene, 22957
Tssr19015 2 97125119 to 97125122 3 + TSS region transcription start site region 19015
Gm22313 2 97237818 to 97237946 128 + snoRNA gene predicted gene, 22313
Gm23317 2 97272211 to 97272339 128 - snoRNA gene predicted gene, 23317
Tssr19016 2 97466447 to 97466485 38 + TSS region transcription start site region 19016
Cpgi11965 2 97466567 to 97467145 578 CpG island CpG island 11965
Tssr19017 2 97467476 to 97467505 29 + TSS region transcription start site region 19017
Tssr19018 2 97467539 to 97467559 20 + TSS region transcription start site region 19018
Tssr19019 2 97467575 to 97467586 11 + TSS region transcription start site region 19019
Tssr19020 2 97467686 to 97467699 13 + TSS region transcription start site region 19020
Tssr19021 2 97480114 to 97480120 6 + TSS region transcription start site region 19021
Tssr19022 2 97497356 to 97497358 2 + TSS region transcription start site region 19022
Tssr19023 2 97502512 to 97502516 4 + TSS region transcription start site region 19023
Tssr19024 2 97526136 to 97526140 4 + TSS region transcription start site region 19024
D2Mit130 2 97586144 to 97586359 215 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 130
Gm44320 2 97626967 to 97627052 85 - miRNA gene predicted gene, 44320
Tssr19025 2 97630756 to 97630768 12 + TSS region transcription start site region 19025
Tssr19026 2 97630797 to 97630818 21 + TSS region transcription start site region 19026
Tssr19027 2 97630827 to 97630836 9 + TSS region transcription start site region 19027
Gm13803 2 97949191 to 97949679 488 - pseudogene predicted gene 13803
Bw22 2 98064989 to 98064989 0 QTL body weight QTL 22
D2Ucl9 2 98146736 to 98146941 205 DNA segment DNA segment, Chr 2, University College London 9
Gm13804 2 98291403 to 98291574 171 + pseudogene predicted gene 13804
Tssr573 2 98474926 to 98474931 5 + TSS region transcription start site region 573
Gm13806 2 98601023 to 98601309 286 + pseudogene predicted gene 13806
Tssr19028 2 98662227 to 98662243 16 + TSS region transcription start site region 19028
Cpgi11966 2 98662231 to 98662982 751 CpG island CpG island 11966
Gm10801 2 98662237 to 98664083 1846 + protein coding gene predicted gene 10801
Tssr19029 2 98662249 to 98662269 20 + TSS region transcription start site region 19029
Tssr25335 2 98662258 to 98662282 24 - TSS region transcription start site region 25335
Tssr19030 2 98662322 to 98662345 23 + TSS region transcription start site region 19030
Tssr19031 2 98662441 to 98662462 21 + TSS region transcription start site region 19031
Tssr19032 2 98662466 to 98662476 10 + TSS region transcription start site region 19032
Tssr25336 2 98662473 to 98662499 26 - TSS region transcription start site region 25336
Tssr19033 2 98662500 to 98662510 10 + TSS region transcription start site region 19033
Tssr19034 2 98662573 to 98662604 31 + TSS region transcription start site region 19034
Tssr19035 2 98662674 to 98662700 26 + TSS region transcription start site region 19035
Tssr19036 2 98662739 to 98662754 15 + TSS region transcription start site region 19036
Tssr19037 2 98662756 to 98662778 22 + TSS region transcription start site region 19037
Tssr25337 2 98662779 to 98662825 46 - TSS region transcription start site region 25337
Tssr19038 2 98662832 to 98662860 28 + TSS region transcription start site region 19038
Tssr25338 2 98662864 to 98662882 18 - TSS region transcription start site region 25338
Tssr19039 2 98662890 to 98662899 9 + TSS region transcription start site region 19039
Tssr25339 2 98662905 to 98662920 15 - TSS region transcription start site region 25339
Tssr19040 2 98662941 to 98662961 20 + TSS region transcription start site region 19040
Tssr25340 2 98662975 to 98662993 18 - TSS region transcription start site region 25340
Cpgi11967 2 98663641 to 98664093 452 CpG island CpG island 11967
Tssr19041 2 98663713 to 98663719 6 + TSS region transcription start site region 19041
Tssr19042 2 98663720 to 98663740 20 + TSS region transcription start site region 19042
Tssr574 2 98663755 to 98663758 3 + TSS region transcription start site region 574
Tssr19043 2 98663759 to 98663769 10 + TSS region transcription start site region 19043
Tssr19044 2 98663800 to 98663805 5 + TSS region transcription start site region 19044
Tssr19045 2 98663818 to 98663845 27 + TSS region transcription start site region 19045
Tssr19046 2 98663855 to 98663873 18 + TSS region transcription start site region 19046
Tssr25341 2 98663880 to 98663891 11 - TSS region transcription start site region 25341
Tssr19047 2 98663885 to 98663890 5 + TSS region transcription start site region 19047
Tssr19048 2 98664015 to 98664048 33 + TSS region transcription start site region 19048
Tssr25342 2 98664044 to 98664074 30 - TSS region transcription start site region 25342
Tssr19049 2 98664879 to 98664902 23 + TSS region transcription start site region 19049
Tssr19050 2 98665002 to 98665012 10 + TSS region transcription start site region 19050
Tssr19051 2 98665077 to 98665100 23 + TSS region transcription start site region 19051
Tssr19052 2 98665123 to 98665134 11 + TSS region transcription start site region 19052
Tssr25343 2 98665155 to 98665171 16 - TSS region transcription start site region 25343
Cpgi11968 2 98666239 to 98667335 1096 CpG island CpG island 11968
Tssr19053 2 98666241 to 98666261 20 + TSS region transcription start site region 19053
Tssr19054 2 98666266 to 98666276 10 + TSS region transcription start site region 19054
Tssr19055 2 98666280 to 98666298 18 + TSS region transcription start site region 19055
Tssr25344 2 98666281 to 98666287 6 - TSS region transcription start site region 25344
Tssr25345 2 98666320 to 98666331 11 - TSS region transcription start site region 25345
Tssr19056 2 98666452 to 98666463 11 + TSS region transcription start site region 19056
Tssr19057 2 98666464 to 98666475 11 + TSS region transcription start site region 19057
Tssr25346 2 98666504 to 98666528 24 - TSS region transcription start site region 25346
Gm10800 2 98666547 to 98667301 754 - protein coding gene predicted gene 10800
Tssr19058 2 98666619 to 98666664 45 + TSS region transcription start site region 19058
Tssr25347 2 98666625 to 98666636 11 - TSS region transcription start site region 25347
Tssr25348 2 98666659 to 98666693 34 - TSS region transcription start site region 25348
Tssr19059 2 98666749 to 98666784 35 + TSS region transcription start site region 19059
Tssr25349 2 98666789 to 98666791 2 - TSS region transcription start site region 25349
Tssr19060 2 98666798 to 98666821 23 + TSS region transcription start site region 19060
Tssr19061 2 98666837 to 98666870 33 + TSS region transcription start site region 19061
Tssr25350 2 98666866 to 98666889 23 - TSS region transcription start site region 25350
Tssr19062 2 98666884 to 98666900 16 + TSS region transcription start site region 19062
Tssr575 2 98666900 to 98666909 9 - TSS region transcription start site region 575
Tssr19063 2 98666981 to 98667007 26 + TSS region transcription start site region 19063
Tssr25351 2 98667014 to 98667031 17 - TSS region transcription start site region 25351
Tssr19064 2 98667048 to 98667077 29 + TSS region transcription start site region 19064
Tssr25352 2 98667077 to 98667109 32 - TSS region transcription start site region 25352
Tssr25353 2 98667147 to 98667159 12 - TSS region transcription start site region 25353
Tssr19065 2 98667226 to 98667256 30 + TSS region transcription start site region 19065
Tssr25354 2 98667264 to 98667282 18 - TSS region transcription start site region 25354
Tssr25355 2 98667332 to 98667341 9 - TSS region transcription start site region 25355
Gm33780 2 98702599 to 98710391 7792 - lncRNA gene predicted gene, 33780
D2Mit98 2 98733520 to 98733621 101 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 98
Gm29235 2 99357246 to 99357729 483 - lincRNA gene predicted gene 29235
D2Mit184 2 99439553 to 99439688 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 184
Tssr19066 2 99454546 to 99454549 3 + TSS region transcription start site region 19066
Gm13809 2 99555251 to 99555878 627 + pseudogene predicted gene 13809
Tssr25356 2 99573921 to 99573923 2 - TSS region transcription start site region 25356
Tssr19067 2 99734821 to 99734830 9 + TSS region transcription start site region 19067
Tssr19068 2 99800213 to 99800217 4 + TSS region transcription start site region 19068
Gm13808 2 100058933 to 100059116 183 + pseudogene predicted gene 13808
D2Mit301 2 100336003 to 100336129 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 301
Gm13811 2 100336203 to 100336458 255 + pseudogene predicted gene 13811
D2Mit437 2 100405778 to 100405870 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 437
Gm13813 2 100407493 to 100408279 786 - pseudogene predicted gene 13813
Tssr25357 2 100407792 to 100407802 10 - TSS region transcription start site region 25357
Mpaps1 2 112284851 to 97198212 -15086639 QTL microphthalmia anophthalmia susceptibility 1