Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:94150454-97281021

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hsd17b12 2 94032697 to 94157909 125212 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 12
Tssr25317 2 94155386 to 94155401 15 - TSS region transcription start site region 25317
Tssr25318 2 94156190 to 94156193 3 - TSS region transcription start site region 25318
Cpgi11956 2 94157462 to 94158401 939 CpG island CpG island 11956
Tssr25319 2 94157881 to 94157915 34 - TSS region transcription start site region 25319
Gm39885 2 94158062 to 94168218 10156 + lncRNA gene predicted gene, 39885
Mir670hg 2 94160636 to 94264825 104189 - lincRNA gene MIR670 host gene (non-protein coding)
B230209G03Rik 2 94176938 to 94178936 1998 unclassified gene RIKEN cDNA B230209G03 gene
Tssr25320 2 94178911 to 94178926 15 - TSS region transcription start site region 25320
Gm23630 2 94184027 to 94184130 103 - miRNA gene predicted gene, 23630
D2Mit141 2 94212134 to 94212283 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 141
D2Mit129 2 94220879 to 94220981 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 129
Cpgi11957 2 94240620 to 94240780 160 CpG island CpG island 11957
Cpgi11958 2 94241116 to 94241874 758 CpG island CpG island 11958
Mir129-2 2 94241364 to 94241453 89 - miRNA gene microRNA 129-2
Mir129b 2 94241378 to 94241442 64 + miRNA gene microRNA 129b
Cpgi11959 2 94243052 to 94243835 783 CpG island CpG island 11959
Cpgi11960 2 94246871 to 94247426 555 CpG island CpG island 11960
Tssr25321 2 94253508 to 94253513 5 - TSS region transcription start site region 25321
Mir670 2 94261300 to 94261399 99 - miRNA gene microRNA 670
Tssr25322 2 94263043 to 94263048 5 - TSS region transcription start site region 25322
Tssr25323 2 94264713 to 94264734 21 - TSS region transcription start site region 25323
Tssr25324 2 94264745 to 94264764 19 - TSS region transcription start site region 25324
Tssr25325 2 94264964 to 94264981 17 - TSS region transcription start site region 25325
Cpgi11961 2 94272915 to 94274036 1121 CpG island CpG island 11961
Ttc17 2 94300767 to 94406689 105922 - protein coding gene tetratricopeptide repeat domain 17
Tssr25326 2 94332900 to 94332911 11 - TSS region transcription start site region 25326
Itpa-ps1 2 94384502 to 94385098 596 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 1
Tssr25327 2 94400412 to 94400424 12 - TSS region transcription start site region 25327
Tssr25328 2 94404985 to 94405002 17 - TSS region transcription start site region 25328
Cpgi11962 2 94406014 to 94406851 837 CpG island CpG island 11962
Tssr25329 2 94406647 to 94406696 49 - TSS region transcription start site region 25329
2810002D19Rik 2 94406707 to 94411682 4975 + lncRNA gene RIKEN cDNA 2810002D19 gene
Tssr19003 2 94406719 to 94406762 43 + TSS region transcription start site region 19003
Tssr19004 2 94406763 to 94406808 45 + TSS region transcription start site region 19004
Api5 2 94411682 to 94438136 26454 - protein coding gene apoptosis inhibitor 5
Tssr571 2 94412660 to 94412675 15 - TSS region transcription start site region 571
Cpgi11963 2 94437205 to 94438549 1344 CpG island CpG island 11963
Tssr25330 2 94438061 to 94438075 14 - TSS region transcription start site region 25330
Tssr25331 2 94438081 to 94438161 80 - TSS region transcription start site region 25331
Tssr25332 2 94438162 to 94438171 9 - TSS region transcription start site region 25332
D2Mit221 2 94438799 to 94438928 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 221
Cpgi11964 2 94479953 to 94480209 256 CpG island CpG island 11964
Gm46726 2 94515023 to 94526365 11342 + pseudogene predicted gene, 46726
Gm44461 2 94537987 to 94538069 82 - miRNA gene predicted gene, 44461
Gm13788 2 94590821 to 94591421 600 - pseudogene predicted gene 13788
Gm24318 2 94621958 to 94622088 130 + snoRNA gene predicted gene, 24318
Gm18768 2 94674866 to 94675739 873 + pseudogene predicted gene, 18768
Gm33540 2 94726525 to 94755691 29166 + lncRNA gene predicted gene, 33540
Gm13793 2 94729014 to 94730733 1719 - lincRNA gene predicted gene 13793
Tssr25333 2 94730692 to 94730710 18 - TSS region transcription start site region 25333
Tssr25334 2 94730732 to 94730737 5 - TSS region transcription start site region 25334
Gm26396 2 94792205 to 94792336 131 - snoRNA gene predicted gene, 26396
Gm46754 2 94806263 to 94807044 781 + lncRNA gene predicted gene, 46754
Tssr572 2 94810613 to 94810624 11 + TSS region transcription start site region 572
Gm13794 2 95394242 to 95397651 3409 + lincRNA gene predicted gene 13794
Tssr19005 2 95481447 to 95481448 1 + TSS region transcription start site region 19005
Gm13798 2 95677717 to 95677855 138 + pseudogene predicted gene 13798
Gm13797 2 95697917 to 95698036 119 - pseudogene predicted gene 13797
Gm18435 2 95715454 to 95716021 567 + pseudogene predicted gene, 18435
Gm18404 2 95807764 to 95809848 2084 + pseudogene predicted gene, 18404
D2Ucl7 2 95835333 to 95835580 247 DNA segment DNA segment, Chr 2, University College London 7
Gm13799 2 95838088 to 95840594 2506 + lincRNA gene predicted gene 13799
Gm37175 2 95867926 to 95887514 19588 + unclassified gene predicted gene, 37175
Gm13801 2 96133435 to 96133594 159 + pseudogene predicted gene 13801
Tssr19006 2 96317751 to 96317781 30 + TSS region transcription start site region 19006
Tssr19007 2 96317783 to 96317805 22 + TSS region transcription start site region 19007
Tssr19008 2 96317820 to 96317831 11 + TSS region transcription start site region 19008
Tssr19009 2 96317935 to 96317947 12 + TSS region transcription start site region 19009
Tssr19010 2 96318014 to 96318057 43 + TSS region transcription start site region 19010
Tssr19011 2 96318073 to 96318084 11 + TSS region transcription start site region 19011
Lrrc4c 2 96318169 to 97631666 1313497 + protein coding gene leucine rich repeat containing 4C
Tssr19012 2 96318359 to 96318403 44 + TSS region transcription start site region 19012
Tssr19013 2 96341075 to 96341092 17 + TSS region transcription start site region 19013
B230308P20Rik 2 96476481 to 96478400 1919 unclassified gene RIKEN cDNA B230308P20 gene
Tssr19014 2 96834778 to 96834780 2 + TSS region transcription start site region 19014
4930445B16Rik 2 96987018 to 97083561 96543 - lincRNA gene RIKEN cDNA 4930445B16 gene
Gm17075 2 96999640 to 97000266 626 + pseudogene predicted gene 17075
Gm17076 2 97039912 to 97041300 1388 + pseudogene predicted gene 17076
C230086H14Rik 2 97108430 to 97110411 1981 unclassified gene RIKEN cDNA C230086H14 gene
Gm22957 2 97117414 to 97117536 122 + snoRNA gene predicted gene, 22957
Tssr19015 2 97125119 to 97125122 3 + TSS region transcription start site region 19015
Gm22313 2 97237818 to 97237946 128 + snoRNA gene predicted gene, 22313
Gm23317 2 97272211 to 97272339 128 - snoRNA gene predicted gene, 23317
Mpaps1 2 112284851 to 97198212 -15086639 QTL microphthalmia anophthalmia susceptibility 1