Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:93932697-94257909

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm1335	2	93940213 to 93940577	364	-	pseudogene	predicted gene 1335
Gm39884	2	93944078 to 93950223	6145	+	lncRNA gene	predicted gene, 39884
Gm33160	2	93951305 to 93957740	6435	-	lncRNA gene	predicted gene, 33160
Cpgi11953	2	93954960 to 93957652	2692		CpG island	CpG island 11953
Gm13889	2	93955810 to 93957100	1290	-	protein coding gene	predicted gene 13889
Gm27027	2	93956817 to 93996354	39537	-	protein coding gene	predicted gene, 27027
Tssr25305	2	93957040 to 93957054	14	-	TSS region	transcription start site region 25305
Tssr25306	2	93957096 to 93957107	11	-	TSS region	transcription start site region 25306
Cpgi11954	2	93976127 to 93976840	713		CpG island	CpG island 11954
Alkbh3os1	2	93980034 to 93983575	3541	+	antisense lncRNA gene	alkB homolog 3, opposite strand 1
Alkbh3	2	93980624 to 94010823	30199	-	protein coding gene	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
Tssr25307	2	93984788 to 93984795	7	-	TSS region	transcription start site region 25307
Tssr25308	2	93984811 to 93984845	34	-	TSS region	transcription start site region 25308
Tssr25309	2	93984857 to 93984865	8	-	TSS region	transcription start site region 25309
Cpgi11955	2	94010341 to 94011203	862		CpG island	CpG island 11955
Tssr25310	2	94010718 to 94010727	9	-	TSS region	transcription start site region 25310
Tssr25311	2	94010729 to 94010764	35	-	TSS region	transcription start site region 25311
Tssr25312	2	94010816 to 94010823	7	-	TSS region	transcription start site region 25312
D2Mit386	2	94018729 to 94018850	121		DNA segment	DNA segment, Chr 2, Massachusetts Institute of Technology 386
Hsd17b12	2	94032697 to 94157909	125212	-	protein coding gene	hydroxysteroid (17-beta) dehydrogenase 12
D2Mit303	2	94054365 to 94054460	95		DNA segment	DNA segment, Chr 2, Massachusetts Institute of Technology 303
Tssr25313	2	94066702 to 94066711	9	-	TSS region	transcription start site region 25313
Tssr25314	2	94066747 to 94066755	8	-	TSS region	transcription start site region 25314
Tssr25315	2	94066798 to 94066816	18	-	TSS region	transcription start site region 25315
Tssr25316	2	94109243 to 94109269	26	-	TSS region	transcription start site region 25316
Tssr25317	2	94155386 to 94155401	15	-	TSS region	transcription start site region 25317
Tssr25318	2	94156190 to 94156193	3	-	TSS region	transcription start site region 25318
Cpgi11956	2	94157462 to 94158401	939		CpG island	CpG island 11956
Tssr25319	2	94157881 to 94157915	34	-	TSS region	transcription start site region 25319
Gm39885	2	94158062 to 94168218	10156	+	lncRNA gene	predicted gene, 39885
Mir670hg	2	94160636 to 94264825	104189	-	lincRNA gene	MIR670 host gene (non-protein coding)
B230209G03Rik	2	94176938 to 94178936	1998		unclassified gene	RIKEN cDNA B230209G03 gene
Tssr25320	2	94178911 to 94178926	15	-	TSS region	transcription start site region 25320
Gm23630	2	94184027 to 94184130	103	-	miRNA gene	predicted gene, 23630
D2Mit141	2	94212134 to 94212283	149		DNA segment	DNA segment, Chr 2, Massachusetts Institute of Technology 141
D2Mit129	2	94220879 to 94220981	102		DNA segment	DNA segment, Chr 2, Massachusetts Institute of Technology 129
Cpgi11957	2	94240620 to 94240780	160		CpG island	CpG island 11957
Cpgi11958	2	94241116 to 94241874	758		CpG island	CpG island 11958
Mir129-2	2	94241364 to 94241453	89	-	miRNA gene	microRNA 129-2
Mir129b	2	94241378 to 94241442	64	+	miRNA gene	microRNA 129b
Cpgi11959	2	94243052 to 94243835	783		CpG island	CpG island 11959
Cpgi11960	2	94246871 to 94247426	555		CpG island	CpG island 11960
Tssr25321	2	94253508 to 94253513	5	-	TSS region	transcription start site region 25321