Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:93616798-94516816

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr19000 2 93642269 to 93642277 8 + TSS region transcription start site region 19000
Tssr19001 2 93642279 to 93642294 15 + TSS region transcription start site region 19001
Tssr19002 2 93642307 to 93642334 27 + TSS region transcription start site region 19002
Alx4 2 93642434 to 93681341 38907 + protein coding gene aristaless-like homeobox 4
Cpgi11947 2 93642521 to 93643854 1333 CpG island CpG island 11947
Cpgi11948 2 93645968 to 93646368 400 CpG island CpG island 11948
Cpgi11949 2 93646969 to 93647780 811 CpG island CpG island 11949
Ext2 2 93695631 to 93822583 126952 - protein coding gene exostoses (multiple) 2
Gm39883 2 93710952 to 93721441 10489 - lncRNA gene predicted gene, 39883
Tssr25298 2 93744621 to 93744626 5 - TSS region transcription start site region 25298
Gm13818 2 93794570 to 93795080 510 + pseudogene predicted gene 13818
Cpgi11950 2 93813470 to 93813692 222 CpG island CpG island 11950
Cpgi11951 2 93822023 to 93822797 774 CpG island CpG island 11951
Tssr25299 2 93822523 to 93822534 11 - TSS region transcription start site region 25299
Tssr25300 2 93822537 to 93822581 44 - TSS region transcription start site region 25300
Accs 2 93833467 to 93849943 16476 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)
Cpgi11952 2 93849449 to 93849930 481 CpG island CpG island 11952
Tssr25301 2 93849778 to 93849836 58 - TSS region transcription start site region 25301
Tssr25302 2 93849921 to 93849980 59 - TSS region transcription start site region 25302
Accsl 2 93855361 to 93869157 13796 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like
Tssr25303 2 93869101 to 93869103 2 - TSS region transcription start site region 25303
Tssr25304 2 93869359 to 93869375 16 - TSS region transcription start site region 25304
Gm1335 2 93940213 to 93940577 364 - pseudogene predicted gene 1335
Gm39884 2 93944078 to 93950223 6145 + lncRNA gene predicted gene, 39884
Gm33160 2 93951305 to 93957740 6435 - lncRNA gene predicted gene, 33160
Cpgi11953 2 93954960 to 93957652 2692 CpG island CpG island 11953
Gm13889 2 93955810 to 93957100 1290 - protein coding gene predicted gene 13889
Gm27027 2 93956817 to 93996354 39537 - protein coding gene predicted gene, 27027
Tssr25305 2 93957040 to 93957054 14 - TSS region transcription start site region 25305
Tssr25306 2 93957096 to 93957107 11 - TSS region transcription start site region 25306
Cpgi11954 2 93976127 to 93976840 713 CpG island CpG island 11954
Alkbh3os1 2 93980034 to 93983575 3541 + antisense lncRNA gene alkB homolog 3, opposite strand 1
Alkbh3 2 93980624 to 94010823 30199 - protein coding gene alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
Tssr25307 2 93984788 to 93984795 7 - TSS region transcription start site region 25307
Tssr25308 2 93984811 to 93984845 34 - TSS region transcription start site region 25308
Tssr25309 2 93984857 to 93984865 8 - TSS region transcription start site region 25309
Cpgi11955 2 94010341 to 94011203 862 CpG island CpG island 11955
Tssr25310 2 94010718 to 94010727 9 - TSS region transcription start site region 25310
Tssr25311 2 94010729 to 94010764 35 - TSS region transcription start site region 25311
Tssr25312 2 94010816 to 94010823 7 - TSS region transcription start site region 25312
D2Mit386 2 94018729 to 94018850 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 386
Hsd17b12 2 94032697 to 94157909 125212 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 12
D2Mit303 2 94054365 to 94054460 95 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 303
Tssr25313 2 94066702 to 94066711 9 - TSS region transcription start site region 25313
Tssr25314 2 94066747 to 94066755 8 - TSS region transcription start site region 25314
Tssr25315 2 94066798 to 94066816 18 - TSS region transcription start site region 25315
Tssr25316 2 94109243 to 94109269 26 - TSS region transcription start site region 25316
Tssr25317 2 94155386 to 94155401 15 - TSS region transcription start site region 25317
Tssr25318 2 94156190 to 94156193 3 - TSS region transcription start site region 25318
Cpgi11956 2 94157462 to 94158401 939 CpG island CpG island 11956
Tssr25319 2 94157881 to 94157915 34 - TSS region transcription start site region 25319
Gm39885 2 94158062 to 94168218 10156 + lncRNA gene predicted gene, 39885
Mir670hg 2 94160636 to 94264825 104189 - lincRNA gene MIR670 host gene (non-protein coding)
B230209G03Rik 2 94176938 to 94178936 1998 unclassified gene RIKEN cDNA B230209G03 gene
Tssr25320 2 94178911 to 94178926 15 - TSS region transcription start site region 25320
Gm23630 2 94184027 to 94184130 103 - miRNA gene predicted gene, 23630
D2Mit141 2 94212134 to 94212283 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 141
D2Mit129 2 94220879 to 94220981 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 129
Cpgi11957 2 94240620 to 94240780 160 CpG island CpG island 11957
Cpgi11958 2 94241116 to 94241874 758 CpG island CpG island 11958
Mir129-2 2 94241364 to 94241453 89 - miRNA gene microRNA 129-2
Mir129b 2 94241378 to 94241442 64 + miRNA gene microRNA 129b
Cpgi11959 2 94243052 to 94243835 783 CpG island CpG island 11959
Cpgi11960 2 94246871 to 94247426 555 CpG island CpG island 11960
Tssr25321 2 94253508 to 94253513 5 - TSS region transcription start site region 25321
Mir670 2 94261300 to 94261399 99 - miRNA gene microRNA 670
Tssr25322 2 94263043 to 94263048 5 - TSS region transcription start site region 25322
Tssr25323 2 94264713 to 94264734 21 - TSS region transcription start site region 25323
Tssr25324 2 94264745 to 94264764 19 - TSS region transcription start site region 25324
Tssr25325 2 94264964 to 94264981 17 - TSS region transcription start site region 25325
Cpgi11961 2 94272915 to 94274036 1121 CpG island CpG island 11961
Ttc17 2 94300767 to 94406689 105922 - protein coding gene tetratricopeptide repeat domain 17
Tssr25326 2 94332900 to 94332911 11 - TSS region transcription start site region 25326
Itpa-ps1 2 94384502 to 94385098 596 - pseudogene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 1
Tssr25327 2 94400412 to 94400424 12 - TSS region transcription start site region 25327
Tssr25328 2 94404985 to 94405002 17 - TSS region transcription start site region 25328
Cpgi11962 2 94406014 to 94406851 837 CpG island CpG island 11962
Tssr25329 2 94406647 to 94406696 49 - TSS region transcription start site region 25329
2810002D19Rik 2 94406707 to 94411682 4975 + lncRNA gene RIKEN cDNA 2810002D19 gene
Tssr19003 2 94406719 to 94406762 43 + TSS region transcription start site region 19003
Tssr19004 2 94406763 to 94406808 45 + TSS region transcription start site region 19004
Api5 2 94411682 to 94438136 26454 - protein coding gene apoptosis inhibitor 5
Tssr571 2 94412660 to 94412675 15 - TSS region transcription start site region 571
Cpgi11963 2 94437205 to 94438549 1344 CpG island CpG island 11963
Tssr25330 2 94438061 to 94438075 14 - TSS region transcription start site region 25330
Tssr25331 2 94438081 to 94438161 80 - TSS region transcription start site region 25331
Tssr25332 2 94438162 to 94438171 9 - TSS region transcription start site region 25332
D2Mit221 2 94438799 to 94438928 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 221
Cpgi11964 2 94479953 to 94480209 256 CpG island CpG island 11964
Gm46726 2 94515023 to 94526365 11342 + pseudogene predicted gene, 46726