Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:93272269-94012277

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
Tspan18 2 93201760 to 93334505 132745 - protein coding gene tetraspanin 18
Gm39881 2 93312497 to 93323312 10815 + lncRNA gene predicted gene, 39881
Tssr18991 2 93315385 to 93315390 5 + TSS region transcription start site region 18991
Cpgi11944 2 93333406 to 93334927 1521 CpG island CpG island 11944
Tssr25285 2 93334467 to 93334515 48 - TSS region transcription start site region 25285
Tssr25286 2 93334517 to 93334522 5 - TSS region transcription start site region 25286
Gm32745 2 93338779 to 93353922 15143 - lncRNA gene predicted gene, 32745
Gm23380 2 93386727 to 93386829 102 - rRNA gene predicted gene, 23380
Gm13807 2 93403547 to 93417830 14283 + antisense lncRNA gene predicted gene 13807
Cd82 2 93419102 to 93462950 43848 - protein coding gene CD82 antigen
Mir7001 2 93421929 to 93422007 78 - miRNA gene microRNA 7001
Tssr25287 2 93424670 to 93424676 6 - TSS region transcription start site region 25287
Tssr25288 2 93430217 to 93430229 12 - TSS region transcription start site region 25288
Tssr25289 2 93452680 to 93452687 7 - TSS region transcription start site region 25289
Tssr18992 2 93452796 to 93452833 37 + TSS region transcription start site region 18992
Gm10804 2 93452819 to 93469871 17052 + lincRNA gene predicted gene 10804
Tssr25290 2 93453145 to 93453167 22 - TSS region transcription start site region 25290
Tssr18993 2 93453429 to 93453442 13 + TSS region transcription start site region 18993
Tssr18994 2 93453469 to 93453505 36 + TSS region transcription start site region 18994
Tssr18995 2 93454663 to 93454678 15 + TSS region transcription start site region 18995
Tssr25291 2 93458781 to 93458791 10 - TSS region transcription start site region 25291
Tssr25292 2 93458816 to 93458828 12 - TSS region transcription start site region 25292
Tssr18996 2 93459871 to 93459883 12 + TSS region transcription start site region 18996
Tssr18997 2 93461361 to 93461378 17 + TSS region transcription start site region 18997
Cpgi11945 2 93461937 to 93463133 1196 CpG island CpG island 11945
Tssr25293 2 93461944 to 93461956 12 - TSS region transcription start site region 25293
Tssr18998 2 93462025 to 93462045 20 + TSS region transcription start site region 18998
Tssr25294 2 93462363 to 93462384 21 - TSS region transcription start site region 25294
Tssr25295 2 93462389 to 93462435 46 - TSS region transcription start site region 25295
Tssr25296 2 93462457 to 93462494 37 - TSS region transcription start site region 25296
Tssr25297 2 93520718 to 93520723 5 - TSS region transcription start site region 25297
Gm33010 2 93524855 to 93527669 2814 - lncRNA gene predicted gene, 33010
Gm10803 2 93560568 to 93564361 3793 + protein coding gene predicted gene 10803
Cpgi11946 2 93580304 to 93580718 414 CpG island CpG island 11946
Gm33061 2 93580471 to 93582712 2241 + lncRNA gene predicted gene, 33061
D2Nds1 2 93591138 to 93591306 168 DNA segment DNA segment, Chr 2, Nuffield Department of Surgery 1
Cplaq7 2 93591138 to 93591306 168 QTL circadian period of locomotor activity 7
Tssr18999 2 93600093 to 93600114 21 + TSS region transcription start site region 18999
Tssr19000 2 93642269 to 93642277 8 + TSS region transcription start site region 19000
Tssr19001 2 93642279 to 93642294 15 + TSS region transcription start site region 19001
Tssr19002 2 93642307 to 93642334 27 + TSS region transcription start site region 19002
Alx4 2 93642434 to 93681341 38907 + protein coding gene aristaless-like homeobox 4
Cpgi11947 2 93642521 to 93643854 1333 CpG island CpG island 11947
Cpgi11948 2 93645968 to 93646368 400 CpG island CpG island 11948
Cpgi11949 2 93646969 to 93647780 811 CpG island CpG island 11949
Ext2 2 93695631 to 93822583 126952 - protein coding gene exostoses (multiple) 2
Gm39883 2 93710952 to 93721441 10489 - lncRNA gene predicted gene, 39883
Tssr25298 2 93744621 to 93744626 5 - TSS region transcription start site region 25298
Gm13818 2 93794570 to 93795080 510 + pseudogene predicted gene 13818
Cpgi11950 2 93813470 to 93813692 222 CpG island CpG island 11950
Cpgi11951 2 93822023 to 93822797 774 CpG island CpG island 11951
Tssr25299 2 93822523 to 93822534 11 - TSS region transcription start site region 25299
Tssr25300 2 93822537 to 93822581 44 - TSS region transcription start site region 25300
Accs 2 93833467 to 93849943 16476 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)
Cpgi11952 2 93849449 to 93849930 481 CpG island CpG island 11952
Tssr25301 2 93849778 to 93849836 58 - TSS region transcription start site region 25301
Tssr25302 2 93849921 to 93849980 59 - TSS region transcription start site region 25302
Accsl 2 93855361 to 93869157 13796 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like
Tssr25303 2 93869101 to 93869103 2 - TSS region transcription start site region 25303
Tssr25304 2 93869359 to 93869375 16 - TSS region transcription start site region 25304
Gm1335 2 93940213 to 93940577 364 - pseudogene predicted gene 1335
Gm39884 2 93944078 to 93950223 6145 + lncRNA gene predicted gene, 39884
Gm33160 2 93951305 to 93957740 6435 - lncRNA gene predicted gene, 33160
Cpgi11953 2 93954960 to 93957652 2692 CpG island CpG island 11953
Gm13889 2 93955810 to 93957100 1290 - protein coding gene predicted gene 13889
Gm27027 2 93956817 to 93996354 39537 - protein coding gene predicted gene, 27027
Tssr25305 2 93957040 to 93957054 14 - TSS region transcription start site region 25305
Tssr25306 2 93957096 to 93957107 11 - TSS region transcription start site region 25306
Cpgi11954 2 93976127 to 93976840 713 CpG island CpG island 11954
Alkbh3os1 2 93980034 to 93983575 3541 + antisense lncRNA gene alkB homolog 3, opposite strand 1
Alkbh3 2 93980624 to 94010823 30199 - protein coding gene alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
Tssr25307 2 93984788 to 93984795 7 - TSS region transcription start site region 25307
Tssr25308 2 93984811 to 93984845 34 - TSS region transcription start site region 25308
Tssr25309 2 93984857 to 93984865 8 - TSS region transcription start site region 25309
Cpgi11955 2 94010341 to 94011203 862 CpG island CpG island 11955
Tssr25310 2 94010718 to 94010727 9 - TSS region transcription start site region 25310
Tssr25311 2 94010729 to 94010764 35 - TSS region transcription start site region 25311
Tssr25312 2 94010816 to 94010823 7 - TSS region transcription start site region 25312