Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:92794855-94257669

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
Gm39880 2 92779422 to 92848169 68747 + lncRNA gene predicted gene, 39880
Gm32413 2 92806921 to 92811719 4798 + lncRNA gene predicted gene, 32413
Tssr18964 2 92848718 to 92848723 5 + TSS region transcription start site region 18964
Gm13791 2 92856167 to 92913663 57496 - lncRNA gene predicted gene 13791
Gm13792 2 92872887 to 92873309 422 - pseudogene predicted gene 13792
Cpgi11936 2 92914856 to 92915478 622 CpG island CpG island 11936
Tssr18965 2 92915051 to 92915066 15 + TSS region transcription start site region 18965
Tssr570 2 92915068 to 92915071 3 + TSS region transcription start site region 570
Tssr18966 2 92915080 to 92915115 35 + TSS region transcription start site region 18966
Syt13 2 92915101 to 92956051 40950 + protein coding gene synaptotagmin XIII
Tssr18967 2 92915122 to 92915127 5 + TSS region transcription start site region 18967
Tssr18968 2 92915131 to 92915142 11 + TSS region transcription start site region 18968
D2Mit186 2 92929475 to 92929615 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 186
Tssr18969 2 92946070 to 92946107 37 + TSS region transcription start site region 18969
Tssr18970 2 92952126 to 92952131 5 + TSS region transcription start site region 18970
Cpgi11937 2 92953481 to 92953709 228 CpG island CpG island 11937
Tssr18971 2 92954477 to 92954486 9 + TSS region transcription start site region 18971
Tssr18972 2 92954567 to 92954578 11 + TSS region transcription start site region 18972
Tssr25271 2 92970683 to 92970711 28 - TSS region transcription start site region 25271
Gm29694 2 92972081 to 92974186 2105 - pseudogene predicted gene, 29694
Cpgi11938 2 92973248 to 92974156 908 CpG island CpG island 11938
Prdm11 2 92974906 to 93046144 71238 - protein coding gene PR domain containing 11
Tssr25272 2 92978129 to 92978132 3 - TSS region transcription start site region 25272
Cpgi11939 2 93014274 to 93015789 1515 CpG island CpG island 11939
Tssr25273 2 93014573 to 93014598 25 - TSS region transcription start site region 25273
Tssr25274 2 93014601 to 93014636 35 - TSS region transcription start site region 25274
Gm46753 2 93026612 to 93045703 19091 - lncRNA gene predicted gene, 46753
Tssr18973 2 93027943 to 93027957 14 + TSS region transcription start site region 18973
4631405J19Rik 2 93029348 to 93033445 4097 + antisense lncRNA gene RIKEN cDNA 4631405J19 gene
Tssr18974 2 93030363 to 93030372 9 + TSS region transcription start site region 18974
Tssr18975 2 93030373 to 93030416 43 + TSS region transcription start site region 18975
Tssr18976 2 93030423 to 93030445 22 + TSS region transcription start site region 18976
Tssr25275 2 93037236 to 93037259 23 - TSS region transcription start site region 25275
Cpgi11940 2 93045250 to 93046723 1473 CpG island CpG island 11940
Tssr25276 2 93046140 to 93046172 32 - TSS region transcription start site region 25276
Tssr25277 2 93046262 to 93046298 36 - TSS region transcription start site region 25277
Tssr25278 2 93046430 to 93046465 35 - TSS region transcription start site region 25278
Gm13802 2 93085942 to 93098244 12302 - lincRNA gene predicted gene 13802
Gm32627 2 93144194 to 93152892 8698 + lncRNA gene predicted gene, 32627
1700055L01Rik 2 93146228 to 93149249 3021 + lncRNA gene RIKEN cDNA 1700055L01 gene
Tssr25279 2 93162935 to 93162951 16 - TSS region transcription start site region 25279
Cpgi11941 2 93177742 to 93177993 251 CpG island CpG island 11941
Gm32683 2 93178001 to 93185432 7431 + lncRNA gene predicted gene, 32683
Cpgi11942 2 93180142 to 93180788 646 CpG island CpG island 11942
Tssr18977 2 93181251 to 93181259 8 + TSS region transcription start site region 18977
Tssr18978 2 93186799 to 93186808 9 + TSS region transcription start site region 18978
Cpgi11943 2 93187261 to 93188994 1733 CpG island CpG island 11943
Tssr18979 2 93187542 to 93187553 11 + TSS region transcription start site region 18979
Trp53i11 2 93187548 to 93201759 14211 + protein coding gene transformation related protein 53 inducible protein 11
Tssr18980 2 93187559 to 93187570 11 + TSS region transcription start site region 18980
Tssr18981 2 93187574 to 93187641 67 + TSS region transcription start site region 18981
Tssr18982 2 93187772 to 93187783 11 + TSS region transcription start site region 18982
C230071H18Rik 2 93190906 to 93193424 2518 unclassified gene RIKEN cDNA C230071H18 gene
Tssr18983 2 93191111 to 93191117 6 + TSS region transcription start site region 18983
Tssr18984 2 93192406 to 93192420 14 + TSS region transcription start site region 18984
Tssr18985 2 93198513 to 93198558 45 + TSS region transcription start site region 18985
Tssr18986 2 93199807 to 93199839 32 + TSS region transcription start site region 18986
Tssr18987 2 93200261 to 93200284 23 + TSS region transcription start site region 18987
Tssr18988 2 93200293 to 93200307 14 + TSS region transcription start site region 18988
Tssr18989 2 93201577 to 93201615 38 + TSS region transcription start site region 18989
Tspan18 2 93201760 to 93334505 132745 - protein coding gene tetraspanin 18
Tssr25280 2 93203289 to 93203317 28 - TSS region transcription start site region 25280
Tssr25281 2 93203318 to 93203333 15 - TSS region transcription start site region 25281
Tssr25282 2 93203337 to 93203403 66 - TSS region transcription start site region 25282
Tssr25283 2 93203439 to 93203456 17 - TSS region transcription start site region 25283
Tssr25284 2 93203654 to 93203673 19 - TSS region transcription start site region 25284
Gm32824 2 93218014 to 93247719 29705 + lncRNA gene predicted gene, 32824
Tssr18990 2 93219210 to 93219224 14 + TSS region transcription start site region 18990
Gm39882 2 93256322 to 93259160 2838 + lncRNA gene predicted gene, 39882
Gm39881 2 93312497 to 93323312 10815 + lncRNA gene predicted gene, 39881
Tssr18991 2 93315385 to 93315390 5 + TSS region transcription start site region 18991
Cpgi11944 2 93333406 to 93334927 1521 CpG island CpG island 11944
Tssr25285 2 93334467 to 93334515 48 - TSS region transcription start site region 25285
Tssr25286 2 93334517 to 93334522 5 - TSS region transcription start site region 25286
Gm32745 2 93338779 to 93353922 15143 - lncRNA gene predicted gene, 32745
Gm23380 2 93386727 to 93386829 102 - rRNA gene predicted gene, 23380
Gm13807 2 93403547 to 93417830 14283 + antisense lncRNA gene predicted gene 13807
Cd82 2 93419102 to 93462950 43848 - protein coding gene CD82 antigen
Mir7001 2 93421929 to 93422007 78 - miRNA gene microRNA 7001
Tssr25287 2 93424670 to 93424676 6 - TSS region transcription start site region 25287
Tssr25288 2 93430217 to 93430229 12 - TSS region transcription start site region 25288
Tssr25289 2 93452680 to 93452687 7 - TSS region transcription start site region 25289
Tssr18992 2 93452796 to 93452833 37 + TSS region transcription start site region 18992
Gm10804 2 93452819 to 93469871 17052 + lincRNA gene predicted gene 10804
Tssr25290 2 93453145 to 93453167 22 - TSS region transcription start site region 25290
Tssr18993 2 93453429 to 93453442 13 + TSS region transcription start site region 18993
Tssr18994 2 93453469 to 93453505 36 + TSS region transcription start site region 18994
Tssr18995 2 93454663 to 93454678 15 + TSS region transcription start site region 18995
Tssr25291 2 93458781 to 93458791 10 - TSS region transcription start site region 25291
Tssr25292 2 93458816 to 93458828 12 - TSS region transcription start site region 25292
Tssr18996 2 93459871 to 93459883 12 + TSS region transcription start site region 18996
Tssr18997 2 93461361 to 93461378 17 + TSS region transcription start site region 18997
Cpgi11945 2 93461937 to 93463133 1196 CpG island CpG island 11945
Tssr25293 2 93461944 to 93461956 12 - TSS region transcription start site region 25293
Tssr18998 2 93462025 to 93462045 20 + TSS region transcription start site region 18998
Tssr25294 2 93462363 to 93462384 21 - TSS region transcription start site region 25294
Tssr25295 2 93462389 to 93462435 46 - TSS region transcription start site region 25295
Tssr25296 2 93462457 to 93462494 37 - TSS region transcription start site region 25296
Tssr25297 2 93520718 to 93520723 5 - TSS region transcription start site region 25297
Gm33010 2 93524855 to 93527669 2814 - lncRNA gene predicted gene, 33010
Gm10803 2 93560568 to 93564361 3793 + protein coding gene predicted gene 10803
Cpgi11946 2 93580304 to 93580718 414 CpG island CpG island 11946
Gm33061 2 93580471 to 93582712 2241 + lncRNA gene predicted gene, 33061
Cplaq7 2 93591138 to 93591306 168 QTL circadian period of locomotor activity 7
D2Nds1 2 93591138 to 93591306 168 DNA segment DNA segment, Chr 2, Nuffield Department of Surgery 1
Tssr18999 2 93600093 to 93600114 21 + TSS region transcription start site region 18999
Tssr19000 2 93642269 to 93642277 8 + TSS region transcription start site region 19000
Tssr19001 2 93642279 to 93642294 15 + TSS region transcription start site region 19001
Tssr19002 2 93642307 to 93642334 27 + TSS region transcription start site region 19002
Alx4 2 93642434 to 93681341 38907 + protein coding gene aristaless-like homeobox 4
Cpgi11947 2 93642521 to 93643854 1333 CpG island CpG island 11947
Cpgi11948 2 93645968 to 93646368 400 CpG island CpG island 11948
Cpgi11949 2 93646969 to 93647780 811 CpG island CpG island 11949
Ext2 2 93695631 to 93822583 126952 - protein coding gene exostoses (multiple) 2
Gm39883 2 93710952 to 93721441 10489 - lncRNA gene predicted gene, 39883
Tssr25298 2 93744621 to 93744626 5 - TSS region transcription start site region 25298
Gm13818 2 93794570 to 93795080 510 + pseudogene predicted gene 13818
Cpgi11950 2 93813470 to 93813692 222 CpG island CpG island 11950
Cpgi11951 2 93822023 to 93822797 774 CpG island CpG island 11951
Tssr25299 2 93822523 to 93822534 11 - TSS region transcription start site region 25299
Tssr25300 2 93822537 to 93822581 44 - TSS region transcription start site region 25300
Accs 2 93833467 to 93849943 16476 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)
Cpgi11952 2 93849449 to 93849930 481 CpG island CpG island 11952
Tssr25301 2 93849778 to 93849836 58 - TSS region transcription start site region 25301
Tssr25302 2 93849921 to 93849980 59 - TSS region transcription start site region 25302
Accsl 2 93855361 to 93869157 13796 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like
Tssr25303 2 93869101 to 93869103 2 - TSS region transcription start site region 25303
Tssr25304 2 93869359 to 93869375 16 - TSS region transcription start site region 25304
Gm1335 2 93940213 to 93940577 364 - pseudogene predicted gene 1335
Gm39884 2 93944078 to 93950223 6145 + lncRNA gene predicted gene, 39884
Gm33160 2 93951305 to 93957740 6435 - lncRNA gene predicted gene, 33160
Cpgi11953 2 93954960 to 93957652 2692 CpG island CpG island 11953
Gm13889 2 93955810 to 93957100 1290 - protein coding gene predicted gene 13889
Gm27027 2 93956817 to 93996354 39537 - protein coding gene predicted gene, 27027
Tssr25305 2 93957040 to 93957054 14 - TSS region transcription start site region 25305
Tssr25306 2 93957096 to 93957107 11 - TSS region transcription start site region 25306
Cpgi11954 2 93976127 to 93976840 713 CpG island CpG island 11954
Alkbh3os1 2 93980034 to 93983575 3541 + antisense lncRNA gene alkB homolog 3, opposite strand 1
Alkbh3 2 93980624 to 94010823 30199 - protein coding gene alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
Tssr25307 2 93984788 to 93984795 7 - TSS region transcription start site region 25307
Tssr25308 2 93984811 to 93984845 34 - TSS region transcription start site region 25308
Tssr25309 2 93984857 to 93984865 8 - TSS region transcription start site region 25309
Cpgi11955 2 94010341 to 94011203 862 CpG island CpG island 11955
Tssr25310 2 94010718 to 94010727 9 - TSS region transcription start site region 25310
Tssr25311 2 94010729 to 94010764 35 - TSS region transcription start site region 25311
Tssr25312 2 94010816 to 94010823 7 - TSS region transcription start site region 25312
D2Mit386 2 94018729 to 94018850 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 386
Hsd17b12 2 94032697 to 94157909 125212 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 12
D2Mit303 2 94054365 to 94054460 95 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 303
Tssr25313 2 94066702 to 94066711 9 - TSS region transcription start site region 25313
Tssr25314 2 94066747 to 94066755 8 - TSS region transcription start site region 25314
Tssr25315 2 94066798 to 94066816 18 - TSS region transcription start site region 25315
Tssr25316 2 94109243 to 94109269 26 - TSS region transcription start site region 25316
Tssr25317 2 94155386 to 94155401 15 - TSS region transcription start site region 25317
Tssr25318 2 94156190 to 94156193 3 - TSS region transcription start site region 25318
Cpgi11956 2 94157462 to 94158401 939 CpG island CpG island 11956
Tssr25319 2 94157881 to 94157915 34 - TSS region transcription start site region 25319
Gm39885 2 94158062 to 94168218 10156 + lncRNA gene predicted gene, 39885
Mir670hg 2 94160636 to 94264825 104189 - lincRNA gene MIR670 host gene (non-protein coding)
B230209G03Rik 2 94176938 to 94178936 1998 unclassified gene RIKEN cDNA B230209G03 gene
Tssr25320 2 94178911 to 94178926 15 - TSS region transcription start site region 25320
Gm23630 2 94184027 to 94184130 103 - miRNA gene predicted gene, 23630
D2Mit141 2 94212134 to 94212283 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 141
D2Mit129 2 94220879 to 94220981 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 129
Cpgi11957 2 94240620 to 94240780 160 CpG island CpG island 11957
Cpgi11958 2 94241116 to 94241874 758 CpG island CpG island 11958
Mir129-2 2 94241364 to 94241453 89 - miRNA gene microRNA 129-2
Mir129b 2 94241378 to 94241442 64 + miRNA gene microRNA 129b
Cpgi11959 2 94243052 to 94243835 783 CpG island CpG island 11959
Cpgi11960 2 94246871 to 94247426 555 CpG island CpG island 11960
Tssr25321 2 94253508 to 94253513 5 - TSS region transcription start site region 25321