Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:92587887-93158309

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit253 2 92590957 to 92591097 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 253
Mir7221 2 92592206 to 92592277 71 + miRNA gene microRNA 7221
Mir7222 2 92594602 to 92594676 74 + miRNA gene microRNA 7222
Cpgi11935 2 92598948 to 92600710 1762 CpG island CpG island 11935
Tssr18954 2 92599671 to 92599724 53 + TSS region transcription start site region 18954
Chst1 2 92599707 to 92615250 15543 + protein coding gene carbohydrate sulfotransferase 1
Tssr18955 2 92600070 to 92600096 26 + TSS region transcription start site region 18955
Tssr18956 2 92608307 to 92608316 9 + TSS region transcription start site region 18956
Tssr18957 2 92608323 to 92608333 10 + TSS region transcription start site region 18957
Tssr18958 2 92608336 to 92608352 16 + TSS region transcription start site region 18958
Tssr18959 2 92609490 to 92609498 8 + TSS region transcription start site region 18959
Tssr18960 2 92609500 to 92609516 16 + TSS region transcription start site region 18960
Tssr18961 2 92609541 to 92609560 19 + TSS region transcription start site region 18961
Tssr18962 2 92609567 to 92609588 21 + TSS region transcription start site region 18962
Tssr18963 2 92609593 to 92609604 11 + TSS region transcription start site region 18963
D2Mit479 2 92624436 to 92624572 136 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 479
D2Mit41 2 92637608 to 92637720 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 41
Gm13816 2 92742230 to 92759208 16978 + lincRNA gene predicted gene 13816
Gm39880 2 92779422 to 92848169 68747 + lncRNA gene predicted gene, 39880
Gm32413 2 92806921 to 92811719 4798 + lncRNA gene predicted gene, 32413
Tssr18964 2 92848718 to 92848723 5 + TSS region transcription start site region 18964
Gm13791 2 92856167 to 92913663 57496 - lncRNA gene predicted gene 13791
Gm13792 2 92872887 to 92873309 422 - pseudogene predicted gene 13792
Cpgi11936 2 92914856 to 92915478 622 CpG island CpG island 11936
Tssr18965 2 92915051 to 92915066 15 + TSS region transcription start site region 18965
Tssr570 2 92915068 to 92915071 3 + TSS region transcription start site region 570
Tssr18966 2 92915080 to 92915115 35 + TSS region transcription start site region 18966
Syt13 2 92915101 to 92956051 40950 + protein coding gene synaptotagmin XIII
Tssr18967 2 92915122 to 92915127 5 + TSS region transcription start site region 18967
Tssr18968 2 92915131 to 92915142 11 + TSS region transcription start site region 18968
D2Mit186 2 92929475 to 92929615 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 186
Tssr18969 2 92946070 to 92946107 37 + TSS region transcription start site region 18969
Tssr18970 2 92952126 to 92952131 5 + TSS region transcription start site region 18970
Cpgi11937 2 92953481 to 92953709 228 CpG island CpG island 11937
Tssr18971 2 92954477 to 92954486 9 + TSS region transcription start site region 18971
Tssr18972 2 92954567 to 92954578 11 + TSS region transcription start site region 18972
Tssr25271 2 92970683 to 92970711 28 - TSS region transcription start site region 25271
Gm29694 2 92972081 to 92974186 2105 - pseudogene predicted gene, 29694
Cpgi11938 2 92973248 to 92974156 908 CpG island CpG island 11938
Prdm11 2 92974906 to 93046144 71238 - protein coding gene PR domain containing 11
Tssr25272 2 92978129 to 92978132 3 - TSS region transcription start site region 25272
Cpgi11939 2 93014274 to 93015789 1515 CpG island CpG island 11939
Tssr25273 2 93014573 to 93014598 25 - TSS region transcription start site region 25273
Tssr25274 2 93014601 to 93014636 35 - TSS region transcription start site region 25274
Gm46753 2 93026612 to 93045703 19091 - lncRNA gene predicted gene, 46753
Tssr18973 2 93027943 to 93027957 14 + TSS region transcription start site region 18973
4631405J19Rik 2 93029348 to 93033445 4097 + antisense lncRNA gene RIKEN cDNA 4631405J19 gene
Tssr18974 2 93030363 to 93030372 9 + TSS region transcription start site region 18974
Tssr18975 2 93030373 to 93030416 43 + TSS region transcription start site region 18975
Tssr18976 2 93030423 to 93030445 22 + TSS region transcription start site region 18976
Tssr25275 2 93037236 to 93037259 23 - TSS region transcription start site region 25275
Cpgi11940 2 93045250 to 93046723 1473 CpG island CpG island 11940
Tssr25276 2 93046140 to 93046172 32 - TSS region transcription start site region 25276
Tssr25277 2 93046262 to 93046298 36 - TSS region transcription start site region 25277
Tssr25278 2 93046430 to 93046465 35 - TSS region transcription start site region 25278
Gm13802 2 93085942 to 93098244 12302 - lincRNA gene predicted gene 13802
Gm32627 2 93144194 to 93152892 8698 + lncRNA gene predicted gene, 32627
1700055L01Rik 2 93146228 to 93149249 3021 + lncRNA gene RIKEN cDNA 1700055L01 gene