Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:92358289-94048317

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224 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orgwq2 2 3886089 to 93591306 89705217 QTL organ weight QTL 2
Phf21a 2 92183745 to 92364667 180922 + protein coding gene PHD finger protein 21A
Large2 2 92365046 to 92371755 6709 - protein coding gene LARGE xylosyl- and glucuronyltransferase 2
Cpgi11927 2 92370413 to 92371224 811 CpG island CpG island 11927
Tssr25249 2 92370968 to 92370992 24 - TSS region transcription start site region 25249
Tssr25250 2 92370999 to 92371036 37 - TSS region transcription start site region 25250
Tssr25251 2 92371039 to 92371062 23 - TSS region transcription start site region 25251
Cpgi11928 2 92374489 to 92375889 1400 CpG island CpG island 11928
Pex16 2 92374676 to 92381217 6541 + protein coding gene peroxisomal biogenesis factor 16
Tssr18943 2 92375458 to 92375561 103 + TSS region transcription start site region 18943
Tssr18944 2 92375704 to 92375743 39 + TSS region transcription start site region 18944
Tssr568 2 92375766 to 92375777 11 + TSS region transcription start site region 568
Tssr18945 2 92382911 to 92382924 13 + TSS region transcription start site region 18945
1700029I15Rik 2 92382918 to 92383603 685 + protein coding gene RIKEN cDNA 1700029I15 gene
Tssr18946 2 92382932 to 92382941 9 + TSS region transcription start site region 18946
Mapk8ip1 2 92383676 to 92401263 17587 - protein coding gene mitogen-activated protein kinase 8 interacting protein 1
Mir7000 2 92387384 to 92387446 62 - miRNA gene microRNA 7000
Cpgi11929 2 92388829 to 92389609 780 CpG island CpG island 11929
Tssr25252 2 92389012 to 92389019 7 - TSS region transcription start site region 25252
Tssr25253 2 92389248 to 92389335 87 - TSS region transcription start site region 25253
Cpgi11930 2 92392104 to 92392582 478 CpG island CpG island 11930
Tssr25254 2 92392335 to 92392396 61 - TSS region transcription start site region 25254
Tssr25255 2 92392441 to 92392494 53 - TSS region transcription start site region 25255
Tssr25256 2 92392497 to 92392523 26 - TSS region transcription start site region 25256
Tssr25257 2 92392634 to 92392654 20 - TSS region transcription start site region 25257
Cpgi11931 2 92400472 to 92401732 1260 CpG island CpG island 11931
Tssr25258 2 92401155 to 92401180 25 - TSS region transcription start site region 25258
Tssr25259 2 92401237 to 92401352 115 - TSS region transcription start site region 25259
Cry2 2 92403646 to 92434043 30397 - protein coding gene cryptochrome 2 (photolyase-like)
D930015M05Rik 2 92408892 to 92432308 23416 + lncRNA gene RIKEN cDNA D930015M05 gene
Tssr18947 2 92422859 to 92422893 34 + TSS region transcription start site region 18947
D2Mit302 2 92431135 to 92431289 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 302
Cpgi11932 2 92433468 to 92434477 1009 CpG island CpG island 11932
Tssr25260 2 92434027 to 92434053 26 - TSS region transcription start site region 25260
Tssr25261 2 92434451 to 92434454 3 - TSS region transcription start site region 25261
Tssr18948 2 92442112 to 92442117 5 + TSS region transcription start site region 18948
Slc35c1 2 92452764 to 92460518 7754 - protein coding gene solute carrier family 35, member C1
Gm4026 2 92452766 to 92460934 8168 protein coding gene predicted gene 4026
Cpgi11933 2 92458623 to 92460719 2096 CpG island CpG island 11933
Tssr25262 2 92458881 to 92458907 26 - TSS region transcription start site region 25262
Tssr25263 2 92459267 to 92459313 46 - TSS region transcription start site region 25263
Tssr25264 2 92459589 to 92459602 13 - TSS region transcription start site region 25264
Tssr25265 2 92459711 to 92459781 70 - TSS region transcription start site region 25265
Tssr25266 2 92459783 to 92459797 14 - TSS region transcription start site region 25266
Tssr25267 2 92460449 to 92460524 75 - TSS region transcription start site region 25267
Tssr18949 2 92483833 to 92483876 43 + TSS region transcription start site region 18949
Gm13814 2 92483926 to 92529809 45883 + lincRNA gene predicted gene 13814
Cpgi11934 2 92529240 to 92529619 379 CpG island CpG island 11934
Gm13817 2 92529694 to 92540980 11286 - lincRNA gene predicted gene 13817
Tssr25268 2 92540949 to 92540953 4 - TSS region transcription start site region 25268
Tssr25269 2 92540954 to 92540961 7 - TSS region transcription start site region 25269
Tssr25270 2 92540967 to 92540987 20 - TSS region transcription start site region 25270
Tssr18950 2 92541135 to 92541165 30 + TSS region transcription start site region 18950
Tssr18951 2 92541174 to 92541181 7 + TSS region transcription start site region 18951
Tssr18952 2 92554481 to 92554483 2 + TSS region transcription start site region 18952
Gm13815 2 92561269 to 92561680 411 + pseudogene predicted gene 13815
Tssr569 2 92568024 to 92568030 6 + TSS region transcription start site region 569
Tssr18953 2 92577453 to 92577457 4 + TSS region transcription start site region 18953
D2Mit253 2 92590957 to 92591097 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 253
Mir7221 2 92592206 to 92592277 71 + miRNA gene microRNA 7221
Mir7222 2 92594602 to 92594676 74 + miRNA gene microRNA 7222
Cpgi11935 2 92598948 to 92600710 1762 CpG island CpG island 11935
Tssr18954 2 92599671 to 92599724 53 + TSS region transcription start site region 18954
Chst1 2 92599707 to 92615250 15543 + protein coding gene carbohydrate sulfotransferase 1
Tssr18955 2 92600070 to 92600096 26 + TSS region transcription start site region 18955
Tssr18956 2 92608307 to 92608316 9 + TSS region transcription start site region 18956
Tssr18957 2 92608323 to 92608333 10 + TSS region transcription start site region 18957
Tssr18958 2 92608336 to 92608352 16 + TSS region transcription start site region 18958
Tssr18959 2 92609490 to 92609498 8 + TSS region transcription start site region 18959
Tssr18960 2 92609500 to 92609516 16 + TSS region transcription start site region 18960
Tssr18961 2 92609541 to 92609560 19 + TSS region transcription start site region 18961
Tssr18962 2 92609567 to 92609588 21 + TSS region transcription start site region 18962
Tssr18963 2 92609593 to 92609604 11 + TSS region transcription start site region 18963
D2Mit479 2 92624436 to 92624572 136 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 479
D2Mit41 2 92637608 to 92637720 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 41
Gm13816 2 92742230 to 92759208 16978 + lincRNA gene predicted gene 13816
Gm39880 2 92779422 to 92848169 68747 + lncRNA gene predicted gene, 39880
Gm32413 2 92806921 to 92811719 4798 + lncRNA gene predicted gene, 32413
Tssr18964 2 92848718 to 92848723 5 + TSS region transcription start site region 18964
Gm13791 2 92856167 to 92913663 57496 - lncRNA gene predicted gene 13791
Gm13792 2 92872887 to 92873309 422 - pseudogene predicted gene 13792
Cpgi11936 2 92914856 to 92915478 622 CpG island CpG island 11936
Tssr18965 2 92915051 to 92915066 15 + TSS region transcription start site region 18965
Tssr570 2 92915068 to 92915071 3 + TSS region transcription start site region 570
Tssr18966 2 92915080 to 92915115 35 + TSS region transcription start site region 18966
Syt13 2 92915101 to 92956051 40950 + protein coding gene synaptotagmin XIII
Tssr18967 2 92915122 to 92915127 5 + TSS region transcription start site region 18967
Tssr18968 2 92915131 to 92915142 11 + TSS region transcription start site region 18968
D2Mit186 2 92929475 to 92929615 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 186
Tssr18969 2 92946070 to 92946107 37 + TSS region transcription start site region 18969
Tssr18970 2 92952126 to 92952131 5 + TSS region transcription start site region 18970
Cpgi11937 2 92953481 to 92953709 228 CpG island CpG island 11937
Tssr18971 2 92954477 to 92954486 9 + TSS region transcription start site region 18971
Tssr18972 2 92954567 to 92954578 11 + TSS region transcription start site region 18972
Tssr25271 2 92970683 to 92970711 28 - TSS region transcription start site region 25271
Gm29694 2 92972081 to 92974186 2105 - pseudogene predicted gene, 29694
Cpgi11938 2 92973248 to 92974156 908 CpG island CpG island 11938
Prdm11 2 92974906 to 93046144 71238 - protein coding gene PR domain containing 11
Tssr25272 2 92978129 to 92978132 3 - TSS region transcription start site region 25272
Cpgi11939 2 93014274 to 93015789 1515 CpG island CpG island 11939
Tssr25273 2 93014573 to 93014598 25 - TSS region transcription start site region 25273
Tssr25274 2 93014601 to 93014636 35 - TSS region transcription start site region 25274
Gm46753 2 93026612 to 93045703 19091 - lncRNA gene predicted gene, 46753
Tssr18973 2 93027943 to 93027957 14 + TSS region transcription start site region 18973
4631405J19Rik 2 93029348 to 93033445 4097 + antisense lncRNA gene RIKEN cDNA 4631405J19 gene
Tssr18974 2 93030363 to 93030372 9 + TSS region transcription start site region 18974
Tssr18975 2 93030373 to 93030416 43 + TSS region transcription start site region 18975
Tssr18976 2 93030423 to 93030445 22 + TSS region transcription start site region 18976
Tssr25275 2 93037236 to 93037259 23 - TSS region transcription start site region 25275
Cpgi11940 2 93045250 to 93046723 1473 CpG island CpG island 11940
Tssr25276 2 93046140 to 93046172 32 - TSS region transcription start site region 25276
Tssr25277 2 93046262 to 93046298 36 - TSS region transcription start site region 25277
Tssr25278 2 93046430 to 93046465 35 - TSS region transcription start site region 25278
Gm13802 2 93085942 to 93098244 12302 - lincRNA gene predicted gene 13802
Gm32627 2 93144194 to 93152892 8698 + lncRNA gene predicted gene, 32627
1700055L01Rik 2 93146228 to 93149249 3021 + lncRNA gene RIKEN cDNA 1700055L01 gene
Tssr25279 2 93162935 to 93162951 16 - TSS region transcription start site region 25279
Cpgi11941 2 93177742 to 93177993 251 CpG island CpG island 11941
Gm32683 2 93178001 to 93185432 7431 + lncRNA gene predicted gene, 32683
Cpgi11942 2 93180142 to 93180788 646 CpG island CpG island 11942
Tssr18977 2 93181251 to 93181259 8 + TSS region transcription start site region 18977
Tssr18978 2 93186799 to 93186808 9 + TSS region transcription start site region 18978
Cpgi11943 2 93187261 to 93188994 1733 CpG island CpG island 11943
Tssr18979 2 93187542 to 93187553 11 + TSS region transcription start site region 18979
Trp53i11 2 93187548 to 93201759 14211 + protein coding gene transformation related protein 53 inducible protein 11
Tssr18980 2 93187559 to 93187570 11 + TSS region transcription start site region 18980
Tssr18981 2 93187574 to 93187641 67 + TSS region transcription start site region 18981
Tssr18982 2 93187772 to 93187783 11 + TSS region transcription start site region 18982
C230071H18Rik 2 93190906 to 93193424 2518 unclassified gene RIKEN cDNA C230071H18 gene
Tssr18983 2 93191111 to 93191117 6 + TSS region transcription start site region 18983
Tssr18984 2 93192406 to 93192420 14 + TSS region transcription start site region 18984
Tssr18985 2 93198513 to 93198558 45 + TSS region transcription start site region 18985
Tssr18986 2 93199807 to 93199839 32 + TSS region transcription start site region 18986
Tssr18987 2 93200261 to 93200284 23 + TSS region transcription start site region 18987
Tssr18988 2 93200293 to 93200307 14 + TSS region transcription start site region 18988
Tssr18989 2 93201577 to 93201615 38 + TSS region transcription start site region 18989
Tspan18 2 93201760 to 93334505 132745 - protein coding gene tetraspanin 18
Tssr25280 2 93203289 to 93203317 28 - TSS region transcription start site region 25280
Tssr25281 2 93203318 to 93203333 15 - TSS region transcription start site region 25281
Tssr25282 2 93203337 to 93203403 66 - TSS region transcription start site region 25282
Tssr25283 2 93203439 to 93203456 17 - TSS region transcription start site region 25283
Tssr25284 2 93203654 to 93203673 19 - TSS region transcription start site region 25284
Gm32824 2 93218014 to 93247719 29705 + lncRNA gene predicted gene, 32824
Tssr18990 2 93219210 to 93219224 14 + TSS region transcription start site region 18990
Gm39882 2 93256322 to 93259160 2838 + lncRNA gene predicted gene, 39882
Gm39881 2 93312497 to 93323312 10815 + lncRNA gene predicted gene, 39881
Tssr18991 2 93315385 to 93315390 5 + TSS region transcription start site region 18991
Cpgi11944 2 93333406 to 93334927 1521 CpG island CpG island 11944
Tssr25285 2 93334467 to 93334515 48 - TSS region transcription start site region 25285
Tssr25286 2 93334517 to 93334522 5 - TSS region transcription start site region 25286
Gm32745 2 93338779 to 93353922 15143 - lncRNA gene predicted gene, 32745
Gm23380 2 93386727 to 93386829 102 - rRNA gene predicted gene, 23380
Gm13807 2 93403547 to 93417830 14283 + antisense lncRNA gene predicted gene 13807
Cd82 2 93419102 to 93462950 43848 - protein coding gene CD82 antigen
Mir7001 2 93421929 to 93422007 78 - miRNA gene microRNA 7001
Tssr25287 2 93424670 to 93424676 6 - TSS region transcription start site region 25287
Tssr25288 2 93430217 to 93430229 12 - TSS region transcription start site region 25288
Tssr25289 2 93452680 to 93452687 7 - TSS region transcription start site region 25289
Tssr18992 2 93452796 to 93452833 37 + TSS region transcription start site region 18992
Gm10804 2 93452819 to 93469871 17052 + lincRNA gene predicted gene 10804
Tssr25290 2 93453145 to 93453167 22 - TSS region transcription start site region 25290
Tssr18993 2 93453429 to 93453442 13 + TSS region transcription start site region 18993
Tssr18994 2 93453469 to 93453505 36 + TSS region transcription start site region 18994
Tssr18995 2 93454663 to 93454678 15 + TSS region transcription start site region 18995
Tssr25291 2 93458781 to 93458791 10 - TSS region transcription start site region 25291
Tssr25292 2 93458816 to 93458828 12 - TSS region transcription start site region 25292
Tssr18996 2 93459871 to 93459883 12 + TSS region transcription start site region 18996
Tssr18997 2 93461361 to 93461378 17 + TSS region transcription start site region 18997
Cpgi11945 2 93461937 to 93463133 1196 CpG island CpG island 11945
Tssr25293 2 93461944 to 93461956 12 - TSS region transcription start site region 25293
Tssr18998 2 93462025 to 93462045 20 + TSS region transcription start site region 18998
Tssr25294 2 93462363 to 93462384 21 - TSS region transcription start site region 25294
Tssr25295 2 93462389 to 93462435 46 - TSS region transcription start site region 25295
Tssr25296 2 93462457 to 93462494 37 - TSS region transcription start site region 25296
Tssr25297 2 93520718 to 93520723 5 - TSS region transcription start site region 25297
Gm33010 2 93524855 to 93527669 2814 - lncRNA gene predicted gene, 33010
Gm10803 2 93560568 to 93564361 3793 + protein coding gene predicted gene 10803
Cpgi11946 2 93580304 to 93580718 414 CpG island CpG island 11946
Gm33061 2 93580471 to 93582712 2241 + lncRNA gene predicted gene, 33061
D2Nds1 2 93591138 to 93591306 168 DNA segment DNA segment, Chr 2, Nuffield Department of Surgery 1
Cplaq7 2 93591138 to 93591306 168 QTL circadian period of locomotor activity 7
Tssr18999 2 93600093 to 93600114 21 + TSS region transcription start site region 18999
Tssr19000 2 93642269 to 93642277 8 + TSS region transcription start site region 19000
Tssr19001 2 93642279 to 93642294 15 + TSS region transcription start site region 19001
Tssr19002 2 93642307 to 93642334 27 + TSS region transcription start site region 19002
Alx4 2 93642434 to 93681341 38907 + protein coding gene aristaless-like homeobox 4
Cpgi11947 2 93642521 to 93643854 1333 CpG island CpG island 11947
Cpgi11948 2 93645968 to 93646368 400 CpG island CpG island 11948
Cpgi11949 2 93646969 to 93647780 811 CpG island CpG island 11949
Ext2 2 93695631 to 93822583 126952 - protein coding gene exostoses (multiple) 2
Gm39883 2 93710952 to 93721441 10489 - lncRNA gene predicted gene, 39883
Tssr25298 2 93744621 to 93744626 5 - TSS region transcription start site region 25298
Gm13818 2 93794570 to 93795080 510 + pseudogene predicted gene 13818
Cpgi11950 2 93813470 to 93813692 222 CpG island CpG island 11950
Cpgi11951 2 93822023 to 93822797 774 CpG island CpG island 11951
Tssr25299 2 93822523 to 93822534 11 - TSS region transcription start site region 25299
Tssr25300 2 93822537 to 93822581 44 - TSS region transcription start site region 25300
Accs 2 93833467 to 93849943 16476 - protein coding gene 1-aminocyclopropane-1-carboxylate synthase (non-functional)
Cpgi11952 2 93849449 to 93849930 481 CpG island CpG island 11952
Tssr25301 2 93849778 to 93849836 58 - TSS region transcription start site region 25301