Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:9218989-9969002

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23963 2 9240756 to 9240832 76 - miRNA gene predicted gene, 23963
Gm13221 2 9270080 to 9270509 429 - pseudogene predicted gene 13221
D2Dcr42 2 9271650 to 9271752 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 42
Tssr22531 2 9304860 to 9304863 3 - TSS region transcription start site region 22531
Tssr22532 2 9305047 to 9305052 5 - TSS region transcription start site region 22532
Tssr16047 2 9305327 to 9305332 5 + TSS region transcription start site region 16047
D2Dcr43 2 9308713 to 9308809 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 43
Tssr16048 2 9313363 to 9313366 3 + TSS region transcription start site region 16048
D2Dcr44 2 9336209 to 9336314 105 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 44
D2Mit359 2 9348540 to 9348645 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 359
Gm13219 2 9352431 to 9447676 95245 + lincRNA gene predicted gene 13219
Tssr16049 2 9352468 to 9352480 12 + TSS region transcription start site region 16049
Tssr16050 2 9352481 to 9352499 18 + TSS region transcription start site region 16050
Tssr16051 2 9368462 to 9368511 49 + TSS region transcription start site region 16051
Tssr16052 2 9369038 to 9369053 15 + TSS region transcription start site region 16052
Tssr16053 2 9369064 to 9369075 11 + TSS region transcription start site region 16053
Tssr22533 2 9375933 to 9375937 4 - TSS region transcription start site region 22533
Tssr16054 2 9376280 to 9376325 45 + TSS region transcription start site region 16054
Tssr22534 2 9377953 to 9377964 11 - TSS region transcription start site region 22534
Tssr16055 2 9378241 to 9378261 20 + TSS region transcription start site region 16055
Tssr22535 2 9520132 to 9520135 3 - TSS region transcription start site region 22535
D2Mit5 2 9524642 to 9524778 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 5
Sluc16 2 9524642 to 9524778 136 QTL susceptibility to lung cancer 16
Gm13220 2 9575836 to 9576343 507 + pseudogene predicted gene 13220
Gm13218 2 9591218 to 9592938 1720 - lincRNA gene predicted gene 13218
Tssr22536 2 9593808 to 9593828 20 - TSS region transcription start site region 22536
Tssr22537 2 9593989 to 9594002 13 - TSS region transcription start site region 22537
Tssr22538 2 9594061 to 9594086 25 - TSS region transcription start site region 22538
Tssr22539 2 9594132 to 9594144 12 - TSS region transcription start site region 22539
Tssr22540 2 9594168 to 9594179 11 - TSS region transcription start site region 22540
Tssr16056 2 9595626 to 9595634 8 + TSS region transcription start site region 16056
D2Dcr45 2 9602690 to 9602864 174 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 45
D2Dcr131 2 9602710 to 9602826 116 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 131
D2Mit314 2 9610521 to 9610707 186 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 314
D2Mit314S 2 9610688 to 9610816 128 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-314S
Gm37866 2 9630646 to 9631341 695 - unclassified gene predicted gene, 37866
Tssr16057 2 9681793 to 9681804 11 + TSS region transcription start site region 16057
Tssr16058 2 9681807 to 9681818 11 + TSS region transcription start site region 16058
Tssr22541 2 9691629 to 9691634 5 - TSS region transcription start site region 22541
Tssr16059 2 9693726 to 9693730 4 + TSS region transcription start site region 16059
4930554D03Rik 2 9830297 to 9831242 945 unclassified gene RIKEN cDNA 4930554D03 gene
Tssr22542 2 9834217 to 9834223 6 - TSS region transcription start site region 22542
Gata3 2 9857078 to 9878612 21534 - protein coding gene GATA binding protein 3
Tssr22543 2 9857430 to 9857435 5 - TSS region transcription start site region 22543
Tssr22544 2 9857571 to 9857583 12 - TSS region transcription start site region 22544
Tssr22545 2 9863313 to 9863316 3 - TSS region transcription start site region 22545
Tssr22546 2 9863560 to 9863577 17 - TSS region transcription start site region 22546
Tssr22547 2 9867553 to 9867557 4 - TSS region transcription start site region 22547
Tssr22548 2 9868834 to 9868845 11 - TSS region transcription start site region 22548
Tssr22549 2 9868860 to 9868871 11 - TSS region transcription start site region 22549
Tssr22550 2 9868873 to 9868885 12 - TSS region transcription start site region 22550
Tssr22551 2 9869404 to 9869413 9 - TSS region transcription start site region 22551
Tssr16060 2 9869617 to 9869622 5 + TSS region transcription start site region 16060
Tssr22552 2 9869803 to 9869827 24 - TSS region transcription start site region 22552
Cpgi11182 2 9874396 to 9875116 720 CpG island CpG island 11182
Tssr22553 2 9875390 to 9875404 14 - TSS region transcription start site region 22553
Tssr16061 2 9876114 to 9876137 23 + TSS region transcription start site region 16061
Cpgi11183 2 9876976 to 9877718 742 CpG island CpG island 11183
Gm13256 2 9877256 to 9878869 1613 + antisense lncRNA gene predicted gene 13256
Tssr22554 2 9877443 to 9877459 16 - TSS region transcription start site region 22554
Tssr22555 2 9877836 to 9877850 14 - TSS region transcription start site region 22555
Tssr22556 2 9877884 to 9877887 3 - TSS region transcription start site region 22556
Tssr22557 2 9877986 to 9878016 30 - TSS region transcription start site region 22557
Cpgi11184 2 9878062 to 9879780 1718 CpG island CpG island 11184
Tssr22558 2 9878155 to 9878194 39 - TSS region transcription start site region 22558
Tssr22559 2 9878360 to 9878369 9 - TSS region transcription start site region 22559
Tssr22560 2 9878438 to 9878449 11 - TSS region transcription start site region 22560
Tssr22561 2 9878467 to 9878481 14 - TSS region transcription start site region 22561
Tssr22562 2 9878580 to 9878607 27 - TSS region transcription start site region 22562
Tssr22563 2 9879537 to 9879549 12 - TSS region transcription start site region 22563
Tssr22564 2 9879563 to 9879586 23 - TSS region transcription start site region 22564
Tssr22565 2 9879589 to 9879611 22 - TSS region transcription start site region 22565
Tssr16062 2 9879747 to 9879764 17 + TSS region transcription start site region 16062
Tssr16063 2 9880453 to 9880483 30 + TSS region transcription start site region 16063
Tssr22566 2 9881043 to 9881050 7 - TSS region transcription start site region 22566
Cpgi11185 2 9881071 to 9881645 574 CpG island CpG island 11185
Tssr22567 2 9881120 to 9881155 35 - TSS region transcription start site region 22567
4930412O13Rik 2 9881252 to 9883921 2669 + protein coding gene RIKEN cDNA 4930412O13 gene
Tssr16064 2 9881503 to 9881512 9 + TSS region transcription start site region 16064
Tssr22568 2 9881962 to 9881985 23 - TSS region transcription start site region 22568
Cpgi11186 2 9882087 to 9883314 1227 CpG island CpG island 11186
Tssr16065 2 9882123 to 9882134 11 + TSS region transcription start site region 16065
Tssr16066 2 9882144 to 9882153 9 + TSS region transcription start site region 16066
Tssr16067 2 9882196 to 9882208 12 + TSS region transcription start site region 16067
Tssr16068 2 9882216 to 9882227 11 + TSS region transcription start site region 16068
Tssr16069 2 9882502 to 9882546 44 + TSS region transcription start site region 16069
Tssr16070 2 9882622 to 9882646 24 + TSS region transcription start site region 16070
Tssr400 2 9882652 to 9882661 9 + TSS region transcription start site region 400
9230102O04Rik 2 9883041 to 9889540 6499 - protein coding gene RIKEN cDNA 9230102O04 gene
Tssr22569 2 9884217 to 9884230 13 - TSS region transcription start site region 22569
Tssr22570 2 9884337 to 9884345 8 - TSS region transcription start site region 22570
Tssr16071 2 9884457 to 9884475 18 + TSS region transcription start site region 16071
Tssr16072 2 9884486 to 9884497 11 + TSS region transcription start site region 16072
Tssr16073 2 9884522 to 9884533 11 + TSS region transcription start site region 16073
Tssr22571 2 9887730 to 9887744 14 - TSS region transcription start site region 22571
Tssr22572 2 9887747 to 9887769 22 - TSS region transcription start site region 22572
Tssr22573 2 9887775 to 9887795 20 - TSS region transcription start site region 22573
Tssr22574 2 9887824 to 9887842 18 - TSS region transcription start site region 22574
Tssr22575 2 9887952 to 9888000 48 - TSS region transcription start site region 22575
Cpgi11187 2 9888929 to 9890016 1087 CpG island CpG island 11187
Tssr22576 2 9889535 to 9889544 9 - TSS region transcription start site region 22576
Tssr22577 2 9889586 to 9889596 10 - TSS region transcription start site region 22577
Tssr22578 2 9890026 to 9890035 9 - TSS region transcription start site region 22578
Cpgi11188 2 9896014 to 9896384 370 CpG island CpG island 11188
Gm13262 2 9906178 to 9914678 8500 + antisense lncRNA gene predicted gene 13262
Tssr16074 2 9906283 to 9906291 8 + TSS region transcription start site region 16074
Gm31290 2 9918177 to 9922384 4207 + lncRNA gene predicted gene, 31290
Tssr22579 2 9951812 to 9951833 21 - TSS region transcription start site region 22579
Tssr22580 2 9952629 to 9952661 32 - TSS region transcription start site region 22580
D2Mit233 2 9955306 to 9955454 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 233
Gm31200 2 9965785 to 9968453 2668 + pseudogene predicted gene, 31200
Taf3 2 10048596 to 9914552 -134044 - protein coding gene TATA-box binding protein associated factor 3
Opfaq1 2 27132630 to 9671880 -17460750 QTL open field activity QTL 1