Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:91261016-92131026

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pacsin3 2 91256098 to 91264680 8582 + protein coding gene protein kinase C and casein kinase substrate in neurons 3
Cpgi11904 2 91264707 to 91265861 1154 CpG island CpG island 11904
Arfgap2 2 91264974 to 91276931 11957 + protein coding gene ADP-ribosylation factor GTPase activating protein 2
Tssr18894 2 91265207 to 91265227 20 + TSS region transcription start site region 18894
Tssr18895 2 91265252 to 91265315 63 + TSS region transcription start site region 18895
1110051M20Rik 2 91275068 to 91444704 169636 - protein coding gene RIKEN cDNA 1110051M20 gene
E130006N16Rik 2 91281291 to 91283803 2512 unclassified non-coding RNA gene RIKEN cDNA E130006N16 gene
5930420B01Rik 2 91298943 to 91300631 1688 unclassified gene RIKEN cDNA 5930420B01 gene
Tssr25182 2 91312664 to 91312675 11 - TSS region transcription start site region 25182
Tssr18896 2 91313002 to 91313003 1 + TSS region transcription start site region 18896
9130231A04Rik 2 91327647 to 91328893 1246 unclassified gene RIKEN cDNA 9130231A04 gene
Tssr25183 2 91328859 to 91328885 26 - TSS region transcription start site region 25183
D2Mit441 2 91329020 to 91329123 103 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 441
Tssr25184 2 91333226 to 91333230 4 - TSS region transcription start site region 25184
Gm13787 2 91344022 to 91344189 167 - pseudogene predicted gene 13787
D2Mit96 2 91401580 to 91401731 151 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 96
Gm22071 2 91407054 to 91407136 82 - miRNA gene predicted gene, 22071
Tssr25185 2 91430696 to 91430720 24 - TSS region transcription start site region 25185
Cpgi11905 2 91444452 to 91444794 342 CpG island CpG island 11905
Tssr25186 2 91444629 to 91444726 97 - TSS region transcription start site region 25186
Cpgi11906 2 91457132 to 91458274 1142 CpG island CpG island 11906
Tssr18897 2 91457501 to 91457549 48 + TSS region transcription start site region 18897
Lrp4 2 91457511 to 91513779 56268 + protein coding gene low density lipoprotein receptor-related protein 4
Cpgi11907 2 91458411 to 91459196 785 CpG island CpG island 11907
Tssr18898 2 91498320 to 91498330 10 + TSS region transcription start site region 18898
Tssr18899 2 91513025 to 91513030 5 + TSS region transcription start site region 18899
Gm13770 2 91523580 to 91523884 304 - pseudogene predicted gene 13770
Tssr25187 2 91526464 to 91526469 5 - TSS region transcription start site region 25187
Cpgi11908 2 91526578 to 91527510 932 CpG island CpG island 11908
Tssr18900 2 91526756 to 91526763 7 + TSS region transcription start site region 18900
Ckap5 2 91526762 to 91620664 93902 + protein coding gene cytoskeleton associated protein 5
Tssr18901 2 91526770 to 91526828 58 + TSS region transcription start site region 18901
Tssr565 2 91526833 to 91526840 7 + TSS region transcription start site region 565
Tssr18902 2 91526841 to 91526852 11 + TSS region transcription start site region 18902
Tssr18903 2 91526943 to 91526987 44 + TSS region transcription start site region 18903
Cpgi11909 2 91537640 to 91537979 339 CpG island CpG island 11909
Tssr18904 2 91537814 to 91537835 21 + TSS region transcription start site region 18904
Tssr18905 2 91546305 to 91546329 24 + TSS region transcription start site region 18905
Tssr18906 2 91581147 to 91581166 19 + TSS region transcription start site region 18906
Tssr18907 2 91586126 to 91586137 11 + TSS region transcription start site region 18907
Tssr18908 2 91586163 to 91586175 12 + TSS region transcription start site region 18908
Snord67 2 91596081 to 91596178 97 + snoRNA gene small nucleolar RNA, C/D box 67
F2 2 91625320 to 91636414 11094 - protein coding gene coagulation factor II
Tssr25188 2 91629241 to 91629250 9 - TSS region transcription start site region 25188
Tssr25189 2 91629265 to 91629276 11 - TSS region transcription start site region 25189
Cpgi11910 2 91629769 to 91630284 515 CpG island CpG island 11910
Tssr25190 2 91630563 to 91630574 11 - TSS region transcription start site region 25190
Tssr25191 2 91630680 to 91630694 14 - TSS region transcription start site region 25191
Tssr25192 2 91635802 to 91635812 10 - TSS region transcription start site region 25192
Tssr25193 2 91635850 to 91635862 12 - TSS region transcription start site region 25193
Tssr25194 2 91635880 to 91635904 24 - TSS region transcription start site region 25194
Tssr25195 2 91635908 to 91635935 27 - TSS region transcription start site region 25195
Tssr25196 2 91636394 to 91636439 45 - TSS region transcription start site region 25196
Tssr25197 2 91636459 to 91636462 3 - TSS region transcription start site region 25197
Gm13771 2 91641685 to 91641922 237 - pseudogene predicted gene 13771
Tssr25198 2 91643590 to 91643594 4 - TSS region transcription start site region 25198
Zfp408 2 91643669 to 91649791 6122 - protein coding gene zinc finger protein 408
Cpgi11911 2 91649500 to 91650433 933 CpG island CpG island 11911
Tssr25199 2 91649751 to 91649784 33 - TSS region transcription start site region 25199
Tssr25200 2 91649785 to 91649796 11 - TSS region transcription start site region 25200
Arhgap1 2 91649875 to 91672325 22450 + protein coding gene Rho GTPase activating protein 1
Tssr25201 2 91650019 to 91650036 17 - TSS region transcription start site region 25201
Tssr18909 2 91650116 to 91650133 17 + TSS region transcription start site region 18909
Tssr18910 2 91650169 to 91650237 68 + TSS region transcription start site region 18910
Tssr18911 2 91663925 to 91663948 23 + TSS region transcription start site region 18911
Tssr18912 2 91663954 to 91663973 19 + TSS region transcription start site region 18912
Tssr18913 2 91663981 to 91664020 39 + TSS region transcription start site region 18913
Tssr18914 2 91664120 to 91664158 38 + TSS region transcription start site region 18914
Tssr18915 2 91664333 to 91664350 17 + TSS region transcription start site region 18915
Tssr18916 2 91664410 to 91664446 36 + TSS region transcription start site region 18916
Tssr18917 2 91664452 to 91664495 43 + TSS region transcription start site region 18917
Tssr18918 2 91664582 to 91664605 23 + TSS region transcription start site region 18918
Atg13 2 91674618 to 91710576 35958 - protein coding gene autophagy related 13
Tssr25202 2 91676056 to 91676078 22 - TSS region transcription start site region 25202
Tssr25203 2 91696016 to 91696026 10 - TSS region transcription start site region 25203
Tssr25204 2 91696209 to 91696227 18 - TSS region transcription start site region 25204
Tssr25205 2 91705759 to 91705768 9 - TSS region transcription start site region 25205
Cpgi11912 2 91710160 to 91711233 1073 CpG island CpG island 11912
Tssr25206 2 91710360 to 91710396 36 - TSS region transcription start site region 25206
Tssr25207 2 91710407 to 91710434 27 - TSS region transcription start site region 25207
Tssr25208 2 91710526 to 91710582 56 - TSS region transcription start site region 25208
Tssr25209 2 91710585 to 91710598 13 - TSS region transcription start site region 25209
Harbi1 2 91710852 to 91721545 10693 + protein coding gene harbinger transposase derived 1
Tssr18919 2 91710856 to 91710879 23 + TSS region transcription start site region 18919
Tssr18920 2 91710900 to 91710970 70 + TSS region transcription start site region 18920
Gm13776 2 91716159 to 91717419 1260 - pseudogene predicted gene 13776
Tssr25210 2 91717425 to 91717429 4 - TSS region transcription start site region 25210
Cpgi11913 2 91730035 to 91730868 833 CpG island CpG island 11913
Tssr18921 2 91730127 to 91730197 70 + TSS region transcription start site region 18921
Ambra1 2 91730134 to 91918849 188715 + protein coding gene autophagy/beclin 1 regulator 1
Tssr18922 2 91730933 to 91730938 5 + TSS region transcription start site region 18922
C130034I24Rik 2 91752010 to 91756080 4070 unclassified gene RIKEN cDNA C130034I24 gene
Tssr18923 2 91764657 to 91764662 5 + TSS region transcription start site region 18923
Tssr18924 2 91774311 to 91774319 8 + TSS region transcription start site region 18924
Tssr18925 2 91779865 to 91779869 4 + TSS region transcription start site region 18925
Tssr18926 2 91811631 to 91811655 24 + TSS region transcription start site region 18926
Tssr566 2 91877814 to 91877816 2 + TSS region transcription start site region 566
Tssr18927 2 91880539 to 91880543 4 + TSS region transcription start site region 18927
D2Mit334 2 91895691 to 91895788 97 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 334
Gm10805 2 91920528 to 91920928 400 - pseudogene predicted gene 10805
Cpgi11914 2 91921406 to 91924272 2866 CpG island CpG island 11914
Tssr18928 2 91922178 to 91922194 16 + TSS region transcription start site region 18928
Chrm4 2 91927249 to 91928688 1439 + protein coding gene cholinergic receptor, muscarinic 4
Cpgi11915 2 91927900 to 91928763 863 CpG island CpG island 11915
Tssr18929 2 91929672 to 91929676 4 + TSS region transcription start site region 18929
Mdk 2 91929805 to 91932297 2492 - protein coding gene midkine
Tssr25211 2 91929868 to 91929890 22 - TSS region transcription start site region 25211
Tssr25212 2 91929892 to 91929904 12 - TSS region transcription start site region 25212
Tssr25213 2 91930919 to 91930938 19 - TSS region transcription start site region 25213
Cpgi11916 2 91931054 to 91932185 1131 CpG island CpG island 11916
Tssr25214 2 91931451 to 91931534 83 - TSS region transcription start site region 25214
Tssr25215 2 91931661 to 91931670 9 - TSS region transcription start site region 25215
Tssr25216 2 91931675 to 91931686 11 - TSS region transcription start site region 25216
Tssr25217 2 91931696 to 91931723 27 - TSS region transcription start site region 25217
Tssr25218 2 91931728 to 91931772 44 - TSS region transcription start site region 25218
Tssr25219 2 91931774 to 91931793 19 - TSS region transcription start site region 25219
D2Mit1007 2 91931869 to 91931971 102 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1007
Tssr25220 2 91931955 to 91931989 34 - TSS region transcription start site region 25220
D2Mit1008 2 91931964 to 91932132 168 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1008
Tssr25221 2 91931994 to 91932008 14 - TSS region transcription start site region 25221
Gm39876 2 91932217 to 91932989 772 + lncRNA gene predicted gene, 39876
Dgkz 2 91932824 to 91975864 43040 - protein coding gene diacylglycerol kinase zeta
Tssr25222 2 91935794 to 91935821 27 - TSS region transcription start site region 25222
Tssr25223 2 91940297 to 91940336 39 - TSS region transcription start site region 25223
D2Mit45 2 91943041 to 91943158 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 45
D2Dcr50 2 91943071 to 91943203 132 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 50
Tssr25224 2 91944819 to 91944839 20 - TSS region transcription start site region 25224
Mir6999 2 91944870 to 91944930 60 - miRNA gene microRNA 6999
Gm9821 2 91945703 to 91947655 1952 + protein coding gene predicted gene 9821
Tssr25225 2 91947477 to 91947492 15 - TSS region transcription start site region 25225
Tssr25226 2 91950288 to 91950359 71 - TSS region transcription start site region 25226
Tssr25227 2 91950386 to 91950406 20 - TSS region transcription start site region 25227
Tssr25228 2 91962491 to 91962494 3 - TSS region transcription start site region 25228
Cpgi11917 2 91962943 to 91964212 1269 CpG island CpG island 11917
Tssr25229 2 91963507 to 91963694 187 - TSS region transcription start site region 25229
Tssr25230 2 91963704 to 91963713 9 - TSS region transcription start site region 25230
Tssr25231 2 91963729 to 91963740 11 - TSS region transcription start site region 25231
Tssr25232 2 91963746 to 91963760 14 - TSS region transcription start site region 25232
Tssr18930 2 91963854 to 91963894 40 + TSS region transcription start site region 18930
Cpgi11918 2 91965387 to 91965738 351 CpG island CpG island 11918
Tssr25233 2 91965506 to 91965525 19 - TSS region transcription start site region 25233
Tssr25234 2 91965529 to 91965560 31 - TSS region transcription start site region 25234
Tssr25235 2 91965565 to 91965596 31 - TSS region transcription start site region 25235
Tssr25236 2 91965721 to 91965738 17 - TSS region transcription start site region 25236
Cpgi11919 2 91975229 to 91976479 1250 CpG island CpG island 11919
Tssr25237 2 91976308 to 91976346 38 - TSS region transcription start site region 25237
Creb3l1 2 91982328 to 92024170 41842 - protein coding gene cAMP responsive element binding protein 3-like 1
Tssr25238 2 91982688 to 91982750 62 - TSS region transcription start site region 25238
Tssr25239 2 91982798 to 91982817 19 - TSS region transcription start site region 25239
Tssr25240 2 91982838 to 91982858 20 - TSS region transcription start site region 25240
Tssr25241 2 91982910 to 91982924 14 - TSS region transcription start site region 25241
Tssr25242 2 91986220 to 91986242 22 - TSS region transcription start site region 25242
Tssr25243 2 91986281 to 91986289 8 - TSS region transcription start site region 25243
Tssr25244 2 91991957 to 91991982 25 - TSS region transcription start site region 25244
Tssr25245 2 92001892 to 92001904 12 - TSS region transcription start site region 25245
Gm31473 2 92005192 to 92045252 40060 + lncRNA gene predicted gene, 31473
Cpgi11920 2 92008235 to 92008914 679 CpG island CpG island 11920
Cpgi11921 2 92023598 to 92024620 1022 CpG island CpG island 11921
Tssr25246 2 92024143 to 92024222 79 - TSS region transcription start site region 25246
Tssr25247 2 92024292 to 92024335 43 - TSS region transcription start site region 25247
Tssr567 2 92024499 to 92024502 3 - TSS region transcription start site region 567
Tssr25248 2 92024504 to 92024529 25 - TSS region transcription start site region 25248
D2Mit15 2 92035835 to 92035976 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 15
Gm13780 2 92043373 to 92096042 52669 - lincRNA gene predicted gene 13780
2900072N19Rik 2 92054989 to 92059369 4380 - lincRNA gene RIKEN cDNA 2900072N19 gene
Cpgi11922 2 92055389 to 92055814 425 CpG island CpG island 11922
Cpgi11923 2 92058462 to 92059026 564 CpG island CpG island 11923
Tssr18931 2 92058709 to 92058729 20 + TSS region transcription start site region 18931
Tssr18932 2 92058730 to 92058778 48 + TSS region transcription start site region 18932
Cpgi11924 2 92059443 to 92060308 865 CpG island CpG island 11924