Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:91103977-91264023

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spi1 2 91082390 to 91115756 33366 + protein coding gene spleen focus forming virus (SFFV) proviral integration oncogene
Tssr18850 2 91113257 to 91113278 21 + TSS region transcription start site region 18850
Tssr18851 2 91114258 to 91114283 25 + TSS region transcription start site region 18851
Tssr18852 2 91114315 to 91114343 28 + TSS region transcription start site region 18852
Cpgi11896 2 91115042 to 91115630 588 CpG island CpG island 11896
Tssr18853 2 91115160 to 91115171 11 + TSS region transcription start site region 18853
Tssr18854 2 91115195 to 91115213 18 + TSS region transcription start site region 18854
Tssr18855 2 91115360 to 91115390 30 + TSS region transcription start site region 18855
Tssr18856 2 91115407 to 91115438 31 + TSS region transcription start site region 18856
Tssr18857 2 91115522 to 91115554 32 + TSS region transcription start site region 18857
Tssr18858 2 91115586 to 91115597 11 + TSS region transcription start site region 18858
Tssr18859 2 91115693 to 91115702 9 + TSS region transcription start site region 18859
Tssr25158 2 91115745 to 91115757 12 - TSS region transcription start site region 25158
Tssr18860 2 91118136 to 91118150 14 + TSS region transcription start site region 18860
Mybpc3 2 91118144 to 91136516 18372 + protein coding gene myosin binding protein C, cardiac
Tssr18861 2 91118910 to 91118921 11 + TSS region transcription start site region 18861
Tssr18862 2 91118949 to 91118952 3 + TSS region transcription start site region 18862
Tssr18863 2 91118973 to 91118980 7 + TSS region transcription start site region 18863
Tssr18864 2 91119039 to 91119052 13 + TSS region transcription start site region 18864
Cpgi11897 2 91119076 to 91119521 445 CpG island CpG island 11897
Tssr18865 2 91119201 to 91119217 16 + TSS region transcription start site region 18865
Tssr18866 2 91119858 to 91119863 5 + TSS region transcription start site region 18866
Tssr18867 2 91119883 to 91119888 5 + TSS region transcription start site region 18867
Madd 2 91137360 to 91183837 46477 - protein coding gene MAP-kinase activating death domain
Tssr25159 2 91168624 to 91168627 3 - TSS region transcription start site region 25159
Tssr25160 2 91173185 to 91173192 7 - TSS region transcription start site region 25160
Cpgi11898 2 91182119 to 91183424 1305 CpG island CpG island 11898
Tssr18868 2 91182183 to 91182212 29 + TSS region transcription start site region 18868
Tssr25161 2 91182868 to 91182933 65 - TSS region transcription start site region 25161
Tssr25162 2 91182941 to 91182952 11 - TSS region transcription start site region 25162
Tssr25163 2 91183017 to 91183060 43 - TSS region transcription start site region 25163
Tssr25164 2 91183823 to 91183840 17 - TSS region transcription start site region 25164
Tssr25165 2 91183841 to 91183899 58 - TSS region transcription start site region 25165
Tssr25166 2 91183954 to 91183961 7 - TSS region transcription start site region 25166
Tssr25167 2 91183977 to 91184023 46 - TSS region transcription start site region 25167
Nr1h3 2 91184061 to 91202829 18768 - protein coding gene nuclear receptor subfamily 1, group H, member 3
Cpgi11899 2 91190523 to 91190796 273 CpG island CpG island 11899
Tssr25168 2 91194767 to 91194789 22 - TSS region transcription start site region 25168
Tssr25169 2 91194793 to 91194821 28 - TSS region transcription start site region 25169
Tssr25170 2 91194825 to 91194845 20 - TSS region transcription start site region 25170
Tssr25171 2 91194863 to 91194881 18 - TSS region transcription start site region 25171
Cpgi11900 2 91194927 to 91195198 271 CpG island CpG island 11900
Tssr25172 2 91195040 to 91195080 40 - TSS region transcription start site region 25172
Tssr25173 2 91195097 to 91195114 17 - TSS region transcription start site region 25173
Tssr25174 2 91195147 to 91195189 42 - TSS region transcription start site region 25174
Gm13783 2 91195906 to 91202778 6872 - unclassified non-coding RNA gene predicted gene 13783
Gm23390 2 91200162 to 91200267 105 + snRNA gene predicted gene, 23390
Cpgi11901 2 91202591 to 91203077 486 CpG island CpG island 11901
Tssr25175 2 91202643 to 91202694 51 - TSS region transcription start site region 25175
Tssr18869 2 91202792 to 91202798 6 + TSS region transcription start site region 18869
Acp2 2 91202885 to 91214098 11213 + protein coding gene acid phosphatase 2, lysosomal
Tssr18870 2 91202903 to 91202934 31 + TSS region transcription start site region 18870
Tssr18871 2 91203258 to 91203267 9 + TSS region transcription start site region 18871
Tssr18872 2 91205812 to 91205829 17 + TSS region transcription start site region 18872
Tssr18873 2 91206025 to 91206046 21 + TSS region transcription start site region 18873
Tssr18874 2 91206457 to 91206475 18 + TSS region transcription start site region 18874
Tssr18875 2 91206509 to 91206526 17 + TSS region transcription start site region 18875
Tssr18876 2 91206533 to 91206557 24 + TSS region transcription start site region 18876
Tssr18877 2 91206779 to 91206820 41 + TSS region transcription start site region 18877
D11Hjk15 2 91207605 to 91207729 124 DNA segment DNA segment, Chr 11, H. Jockusch 15
Tssr18878 2 91207810 to 91207825 15 + TSS region transcription start site region 18878
Tssr18879 2 91208869 to 91208884 15 + TSS region transcription start site region 18879
Tssr18880 2 91210771 to 91210796 25 + TSS region transcription start site region 18880
Tssr18881 2 91210819 to 91210844 25 + TSS region transcription start site region 18881
Tssr18882 2 91210879 to 91210905 26 + TSS region transcription start site region 18882
Ddb2 2 91211572 to 91236982 25410 - protein coding gene damage specific DNA binding protein 2
Tssr18883 2 91219572 to 91219576 4 + TSS region transcription start site region 18883
Cpgi11902 2 91236560 to 91237332 772 CpG island CpG island 11902
Tssr25176 2 91236840 to 91236855 15 - TSS region transcription start site region 25176
Tssr25177 2 91236869 to 91236872 3 - TSS region transcription start site region 25177
Tssr25178 2 91236877 to 91236921 44 - TSS region transcription start site region 25178
Tssr25179 2 91236925 to 91236965 40 - TSS region transcription start site region 25179
Tssr25180 2 91236967 to 91236989 22 - TSS region transcription start site region 25180
Tssr18884 2 91237110 to 91237145 35 + TSS region transcription start site region 18884
A330069E16Rik 2 91237146 to 91238352 1206 + lincRNA gene RIKEN cDNA A330069E16 gene
Tssr18885 2 91237172 to 91237184 12 + TSS region transcription start site region 18885
Gm31054 2 91242768 to 91255745 12977 + lncRNA gene predicted gene, 31054
Gm17281 2 91250743 to 91255995 5252 - lincRNA gene predicted gene, 17281
Cpgi11903 2 91255726 to 91257559 1833 CpG island CpG island 11903
Tssr25181 2 91256033 to 91256047 14 - TSS region transcription start site region 25181
Tssr18886 2 91256094 to 91256105 11 + TSS region transcription start site region 18886
Pacsin3 2 91256098 to 91264680 8582 + protein coding gene protein kinase C and casein kinase substrate in neurons 3
Tssr18887 2 91256113 to 91256124 11 + TSS region transcription start site region 18887
Tssr18888 2 91256155 to 91256170 15 + TSS region transcription start site region 18888
Tssr18889 2 91256828 to 91256877 49 + TSS region transcription start site region 18889
Tssr18890 2 91256881 to 91256895 14 + TSS region transcription start site region 18890
Tssr18891 2 91257323 to 91257371 48 + TSS region transcription start site region 18891
Tssr18892 2 91259822 to 91259860 38 + TSS region transcription start site region 18892
Tssr18893 2 91259866 to 91259877 11 + TSS region transcription start site region 18893