Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:90896791-91235417

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ndufs3 2 90894636 to 90904721 10085 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S3
Cpgi11889 2 90904212 to 90905036 824 CpG island CpG island 11889
Tssr25139 2 90904649 to 90904727 78 - TSS region transcription start site region 25139
Tssr18797 2 90904733 to 90904747 14 + TSS region transcription start site region 18797
Kbtbd4 2 90904740 to 90910561 5821 + protein coding gene kelch repeat and BTB (POZ) domain containing 4
Tssr18798 2 90904756 to 90904778 22 + TSS region transcription start site region 18798
Tssr18799 2 90904789 to 90904798 9 + TSS region transcription start site region 18799
Tssr25140 2 90904919 to 90904940 21 - TSS region transcription start site region 25140
Tssr18800 2 90905043 to 90905058 15 + TSS region transcription start site region 18800
Tssr18801 2 90905060 to 90905075 15 + TSS region transcription start site region 18801
Tssr18802 2 90909186 to 90909198 12 + TSS region transcription start site region 18802
Ptpmt1 2 90910713 to 90918050 7337 - protein coding gene protein tyrosine phosphatase, mitochondrial 1
Cpgi11890 2 90917163 to 90918174 1011 CpG island CpG island 11890
Tssr18803 2 90917255 to 90917266 11 + TSS region transcription start site region 18803
Tssr18804 2 90917298 to 90917392 94 + TSS region transcription start site region 18804
Gm17661 2 90917643 to 90917914 271 + pseudogene predicted gene, 17661
Tssr25141 2 90917678 to 90917697 19 - TSS region transcription start site region 25141
Tssr25142 2 90917735 to 90917746 11 - TSS region transcription start site region 25142
Tssr18805 2 90917757 to 90917768 11 + TSS region transcription start site region 18805
Tssr25143 2 90917764 to 90917827 63 - TSS region transcription start site region 25143
Tssr18806 2 90917772 to 90917874 102 + TSS region transcription start site region 18806
Tssr25144 2 90917839 to 90917871 32 - TSS region transcription start site region 25144
Tssr25145 2 90917987 to 90918107 120 - TSS region transcription start site region 25145
Tssr25146 2 90918394 to 90918442 48 - TSS region transcription start site region 25146
Cpgi11891 2 90940036 to 90941342 1306 CpG island CpG island 11891
Celf1 2 90940387 to 91019497 79110 + protein coding gene CUGBP, Elav-like family member 1
Tssr18807 2 90940466 to 90940523 57 + TSS region transcription start site region 18807
D2Ertd640e 2 90960554 to 90960800 246 DNA segment DNA segment, Chr 2, ERATO Doi 640, expressed
Tssr18808 2 90965068 to 90965080 12 + TSS region transcription start site region 18808
Tssr18809 2 90965086 to 90965108 22 + TSS region transcription start site region 18809
8030479D07Rik 2 90970183 to 90970971 788 unclassified gene RIKEN cDNA 8030479D07 gene
Tssr18810 2 90970474 to 90970479 5 + TSS region transcription start site region 18810
Tssr18811 2 90987581 to 90987592 11 + TSS region transcription start site region 18811
Tssr18812 2 90987603 to 90987612 9 + TSS region transcription start site region 18812
Tssr18813 2 91016761 to 91016772 11 + TSS region transcription start site region 18813
Tssr18814 2 91028192 to 91028200 8 + TSS region transcription start site region 18814
Gm13777 2 91030778 to 91031122 344 - pseudogene predicted gene 13777
Tssr18815 2 91035575 to 91035610 35 + TSS region transcription start site region 18815
Tssr18816 2 91035613 to 91035632 19 + TSS region transcription start site region 18816
Rapsn 2 91035620 to 91045729 10109 + protein coding gene receptor-associated protein of the synapse
Tssr18817 2 91035687 to 91035711 24 + TSS region transcription start site region 18817
Tssr18818 2 91042549 to 91042567 18 + TSS region transcription start site region 18818
Tssr18819 2 91042923 to 91042973 50 + TSS region transcription start site region 18819
Cpgi11892 2 91042960 to 91043277 317 CpG island CpG island 11892
Gm13778 2 91044092 to 91053933 9841 - unclassified non-coding RNA gene predicted gene 13778
Tssr18820 2 91044940 to 91044967 27 + TSS region transcription start site region 18820
Cpgi11893 2 91053879 to 91054462 583 CpG island CpG island 11893
Psmc3 2 91054016 to 91059438 5422 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 3
Tssr18821 2 91054025 to 91054038 13 + TSS region transcription start site region 18821
Tssr18822 2 91054054 to 91054114 60 + TSS region transcription start site region 18822
Tssr18823 2 91054119 to 91054132 13 + TSS region transcription start site region 18823
Tssr18824 2 91054136 to 91054141 5 + TSS region transcription start site region 18824
Tssr18825 2 91054144 to 91054175 31 + TSS region transcription start site region 18825
Tssr18826 2 91054179 to 91054198 19 + TSS region transcription start site region 18826
Tssr18827 2 91054207 to 91054239 32 + TSS region transcription start site region 18827
Tssr18828 2 91054263 to 91054303 40 + TSS region transcription start site region 18828
Tssr18829 2 91054584 to 91054604 20 + TSS region transcription start site region 18829
Slc39a13 2 91061781 to 91070330 8549 - protein coding gene solute carrier family 39 (metal ion transporter), member 13
Tssr25147 2 91063116 to 91063125 9 - TSS region transcription start site region 25147
Gm39875 2 91063827 to 91065288 1461 + lncRNA gene predicted gene, 39875
Cpgi11894 2 91069747 to 91070772 1025 CpG island CpG island 11894
Tssr25148 2 91070180 to 91070249 69 - TSS region transcription start site region 25148
Gm39874 2 91070298 to 91071623 1325 + lncRNA gene predicted gene, 39874
Tssr25149 2 91070302 to 91070346 44 - TSS region transcription start site region 25149
Tssr18830 2 91070346 to 91070356 10 + TSS region transcription start site region 18830
D2Mit383 2 91076747 to 91076868 121 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 383
Cpgi11895 2 91078585 to 91079061 476 CpG island CpG island 11895
Tssr18831 2 91081376 to 91081393 17 + TSS region transcription start site region 18831
Tssr18832 2 91082153 to 91082189 36 + TSS region transcription start site region 18832
Tssr18833 2 91082216 to 91082252 36 + TSS region transcription start site region 18833
Tssr25150 2 91082239 to 91082259 20 - TSS region transcription start site region 25150
Tssr25151 2 91082264 to 91082292 28 - TSS region transcription start site region 25151
Tssr18834 2 91082362 to 91082387 25 + TSS region transcription start site region 18834
Spi1 2 91082390 to 91115756 33366 + protein coding gene spleen focus forming virus (SFFV) proviral integration oncogene
Tssr18835 2 91082397 to 91082418 21 + TSS region transcription start site region 18835
Tssr25152 2 91082982 to 91082999 17 - TSS region transcription start site region 25152
Tssr25153 2 91084332 to 91084347 15 - TSS region transcription start site region 25153
Tssr25154 2 91084572 to 91084585 13 - TSS region transcription start site region 25154
Tssr25155 2 91086407 to 91086437 30 - TSS region transcription start site region 25155
Tssr18836 2 91089802 to 91089831 29 + TSS region transcription start site region 18836
Tssr560 2 91096685 to 91096693 8 + TSS region transcription start site region 560
Tssr18837 2 91096710 to 91096717 7 + TSS region transcription start site region 18837
Tssr18838 2 91096729 to 91096741 12 + TSS region transcription start site region 18838
Tssr18839 2 91096744 to 91096788 44 + TSS region transcription start site region 18839
Tssr18840 2 91096790 to 91096820 30 + TSS region transcription start site region 18840
Tssr18841 2 91096821 to 91096866 45 + TSS region transcription start site region 18841
Tssr561 2 91096885 to 91096894 9 + TSS region transcription start site region 561
Tssr562 2 91096898 to 91096907 9 + TSS region transcription start site region 562
Tssr563 2 91096911 to 91096920 9 + TSS region transcription start site region 563
Tssr18842 2 91098420 to 91098466 46 + TSS region transcription start site region 18842
Tssr25156 2 91098832 to 91098837 5 - TSS region transcription start site region 25156
Tssr25157 2 91098887 to 91098901 14 - TSS region transcription start site region 25157
Tssr564 2 91099073 to 91099085 12 + TSS region transcription start site region 564
Tssr18843 2 91099575 to 91099587 12 + TSS region transcription start site region 18843
Tssr18844 2 91099622 to 91099634 12 + TSS region transcription start site region 18844
Tssr18845 2 91099692 to 91099704 12 + TSS region transcription start site region 18845
Tssr18846 2 91099782 to 91099824 42 + TSS region transcription start site region 18846
Tssr18847 2 91102273 to 91102286 13 + TSS region transcription start site region 18847
Tssr18848 2 91102330 to 91102347 17 + TSS region transcription start site region 18848
Tssr18849 2 91102511 to 91102524 13 + TSS region transcription start site region 18849
Tssr18850 2 91113257 to 91113278 21 + TSS region transcription start site region 18850
Tssr18851 2 91114258 to 91114283 25 + TSS region transcription start site region 18851
Tssr18852 2 91114315 to 91114343 28 + TSS region transcription start site region 18852
Cpgi11896 2 91115042 to 91115630 588 CpG island CpG island 11896
Tssr18853 2 91115160 to 91115171 11 + TSS region transcription start site region 18853
Tssr18854 2 91115195 to 91115213 18 + TSS region transcription start site region 18854
Tssr18855 2 91115360 to 91115390 30 + TSS region transcription start site region 18855
Tssr18856 2 91115407 to 91115438 31 + TSS region transcription start site region 18856
Tssr18857 2 91115522 to 91115554 32 + TSS region transcription start site region 18857
Tssr18858 2 91115586 to 91115597 11 + TSS region transcription start site region 18858
Tssr18859 2 91115693 to 91115702 9 + TSS region transcription start site region 18859
Tssr25158 2 91115745 to 91115757 12 - TSS region transcription start site region 25158
Tssr18860 2 91118136 to 91118150 14 + TSS region transcription start site region 18860
Mybpc3 2 91118144 to 91136516 18372 + protein coding gene myosin binding protein C, cardiac
Tssr18861 2 91118910 to 91118921 11 + TSS region transcription start site region 18861
Tssr18862 2 91118949 to 91118952 3 + TSS region transcription start site region 18862
Tssr18863 2 91118973 to 91118980 7 + TSS region transcription start site region 18863
Tssr18864 2 91119039 to 91119052 13 + TSS region transcription start site region 18864
Cpgi11897 2 91119076 to 91119521 445 CpG island CpG island 11897
Tssr18865 2 91119201 to 91119217 16 + TSS region transcription start site region 18865
Tssr18866 2 91119858 to 91119863 5 + TSS region transcription start site region 18866
Tssr18867 2 91119883 to 91119888 5 + TSS region transcription start site region 18867
Madd 2 91137360 to 91183837 46477 - protein coding gene MAP-kinase activating death domain
Tssr25159 2 91168624 to 91168627 3 - TSS region transcription start site region 25159
Tssr25160 2 91173185 to 91173192 7 - TSS region transcription start site region 25160
Cpgi11898 2 91182119 to 91183424 1305 CpG island CpG island 11898
Tssr18868 2 91182183 to 91182212 29 + TSS region transcription start site region 18868
Tssr25161 2 91182868 to 91182933 65 - TSS region transcription start site region 25161
Tssr25162 2 91182941 to 91182952 11 - TSS region transcription start site region 25162
Tssr25163 2 91183017 to 91183060 43 - TSS region transcription start site region 25163
Tssr25164 2 91183823 to 91183840 17 - TSS region transcription start site region 25164
Tssr25165 2 91183841 to 91183899 58 - TSS region transcription start site region 25165
Tssr25166 2 91183954 to 91183961 7 - TSS region transcription start site region 25166
Tssr25167 2 91183977 to 91184023 46 - TSS region transcription start site region 25167
Nr1h3 2 91184061 to 91202829 18768 - protein coding gene nuclear receptor subfamily 1, group H, member 3
Cpgi11899 2 91190523 to 91190796 273 CpG island CpG island 11899
Tssr25168 2 91194767 to 91194789 22 - TSS region transcription start site region 25168
Tssr25169 2 91194793 to 91194821 28 - TSS region transcription start site region 25169
Tssr25170 2 91194825 to 91194845 20 - TSS region transcription start site region 25170
Tssr25171 2 91194863 to 91194881 18 - TSS region transcription start site region 25171
Cpgi11900 2 91194927 to 91195198 271 CpG island CpG island 11900
Tssr25172 2 91195040 to 91195080 40 - TSS region transcription start site region 25172
Tssr25173 2 91195097 to 91195114 17 - TSS region transcription start site region 25173
Tssr25174 2 91195147 to 91195189 42 - TSS region transcription start site region 25174
Gm13783 2 91195906 to 91202778 6872 - unclassified non-coding RNA gene predicted gene 13783
Gm23390 2 91200162 to 91200267 105 + snRNA gene predicted gene, 23390
Cpgi11901 2 91202591 to 91203077 486 CpG island CpG island 11901
Tssr25175 2 91202643 to 91202694 51 - TSS region transcription start site region 25175
Tssr18869 2 91202792 to 91202798 6 + TSS region transcription start site region 18869
Acp2 2 91202885 to 91214098 11213 + protein coding gene acid phosphatase 2, lysosomal
Tssr18870 2 91202903 to 91202934 31 + TSS region transcription start site region 18870
Tssr18871 2 91203258 to 91203267 9 + TSS region transcription start site region 18871
Tssr18872 2 91205812 to 91205829 17 + TSS region transcription start site region 18872
Tssr18873 2 91206025 to 91206046 21 + TSS region transcription start site region 18873
Tssr18874 2 91206457 to 91206475 18 + TSS region transcription start site region 18874
Tssr18875 2 91206509 to 91206526 17 + TSS region transcription start site region 18875
Tssr18876 2 91206533 to 91206557 24 + TSS region transcription start site region 18876
Tssr18877 2 91206779 to 91206820 41 + TSS region transcription start site region 18877
D11Hjk15 2 91207605 to 91207729 124 DNA segment DNA segment, Chr 11, H. Jockusch 15
Tssr18878 2 91207810 to 91207825 15 + TSS region transcription start site region 18878
Tssr18879 2 91208869 to 91208884 15 + TSS region transcription start site region 18879
Tssr18880 2 91210771 to 91210796 25 + TSS region transcription start site region 18880
Tssr18881 2 91210819 to 91210844 25 + TSS region transcription start site region 18881
Tssr18882 2 91210879 to 91210905 26 + TSS region transcription start site region 18882
Ddb2 2 91211572 to 91236982 25410 - protein coding gene damage specific DNA binding protein 2
Tssr18883 2 91219572 to 91219576 4 + TSS region transcription start site region 18883