Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:90890387-91069497

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C1qtnf4 2 90885860 to 90890525 4665 + protein coding gene C1q and tumor necrosis factor related protein 4
Cpgi11888 2 90889192 to 90890656 1464 CpG island CpG island 11888
Gm32514 2 90891602 to 90893572 1970 - protein coding gene predicted gene, 32514
Ndufs3 2 90894636 to 90904721 10085 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S3
Tssr25138 2 90895341 to 90895344 3 - TSS region transcription start site region 25138
Cpgi11889 2 90904212 to 90905036 824 CpG island CpG island 11889
Tssr25139 2 90904649 to 90904727 78 - TSS region transcription start site region 25139
Tssr18797 2 90904733 to 90904747 14 + TSS region transcription start site region 18797
Kbtbd4 2 90904740 to 90910561 5821 + protein coding gene kelch repeat and BTB (POZ) domain containing 4
Tssr18798 2 90904756 to 90904778 22 + TSS region transcription start site region 18798
Tssr18799 2 90904789 to 90904798 9 + TSS region transcription start site region 18799
Tssr25140 2 90904919 to 90904940 21 - TSS region transcription start site region 25140
Tssr18800 2 90905043 to 90905058 15 + TSS region transcription start site region 18800
Tssr18801 2 90905060 to 90905075 15 + TSS region transcription start site region 18801
Tssr18802 2 90909186 to 90909198 12 + TSS region transcription start site region 18802
Ptpmt1 2 90910713 to 90918050 7337 - protein coding gene protein tyrosine phosphatase, mitochondrial 1
Cpgi11890 2 90917163 to 90918174 1011 CpG island CpG island 11890
Tssr18803 2 90917255 to 90917266 11 + TSS region transcription start site region 18803
Tssr18804 2 90917298 to 90917392 94 + TSS region transcription start site region 18804
Gm17661 2 90917643 to 90917914 271 + pseudogene predicted gene, 17661
Tssr25141 2 90917678 to 90917697 19 - TSS region transcription start site region 25141
Tssr25142 2 90917735 to 90917746 11 - TSS region transcription start site region 25142
Tssr18805 2 90917757 to 90917768 11 + TSS region transcription start site region 18805
Tssr25143 2 90917764 to 90917827 63 - TSS region transcription start site region 25143
Tssr18806 2 90917772 to 90917874 102 + TSS region transcription start site region 18806
Tssr25144 2 90917839 to 90917871 32 - TSS region transcription start site region 25144
Tssr25145 2 90917987 to 90918107 120 - TSS region transcription start site region 25145
Tssr25146 2 90918394 to 90918442 48 - TSS region transcription start site region 25146
Cpgi11891 2 90940036 to 90941342 1306 CpG island CpG island 11891
Celf1 2 90940387 to 91019497 79110 + protein coding gene CUGBP, Elav-like family member 1
Tssr18807 2 90940466 to 90940523 57 + TSS region transcription start site region 18807
D2Ertd640e 2 90960554 to 90960800 246 DNA segment DNA segment, Chr 2, ERATO Doi 640, expressed
Tssr18808 2 90965068 to 90965080 12 + TSS region transcription start site region 18808
Tssr18809 2 90965086 to 90965108 22 + TSS region transcription start site region 18809
8030479D07Rik 2 90970183 to 90970971 788 unclassified gene RIKEN cDNA 8030479D07 gene
Tssr18810 2 90970474 to 90970479 5 + TSS region transcription start site region 18810
Tssr18811 2 90987581 to 90987592 11 + TSS region transcription start site region 18811
Tssr18812 2 90987603 to 90987612 9 + TSS region transcription start site region 18812
Tssr18813 2 91016761 to 91016772 11 + TSS region transcription start site region 18813
Tssr18814 2 91028192 to 91028200 8 + TSS region transcription start site region 18814
Gm13777 2 91030778 to 91031122 344 - pseudogene predicted gene 13777
Tssr18815 2 91035575 to 91035610 35 + TSS region transcription start site region 18815
Tssr18816 2 91035613 to 91035632 19 + TSS region transcription start site region 18816
Rapsn 2 91035620 to 91045729 10109 + protein coding gene receptor-associated protein of the synapse
Tssr18817 2 91035687 to 91035711 24 + TSS region transcription start site region 18817
Tssr18818 2 91042549 to 91042567 18 + TSS region transcription start site region 18818
Tssr18819 2 91042923 to 91042973 50 + TSS region transcription start site region 18819
Cpgi11892 2 91042960 to 91043277 317 CpG island CpG island 11892
Gm13778 2 91044092 to 91053933 9841 - unclassified non-coding RNA gene predicted gene 13778
Tssr18820 2 91044940 to 91044967 27 + TSS region transcription start site region 18820
Cpgi11893 2 91053879 to 91054462 583 CpG island CpG island 11893
Psmc3 2 91054016 to 91059438 5422 + protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 3
Tssr18821 2 91054025 to 91054038 13 + TSS region transcription start site region 18821
Tssr18822 2 91054054 to 91054114 60 + TSS region transcription start site region 18822
Tssr18823 2 91054119 to 91054132 13 + TSS region transcription start site region 18823
Tssr18824 2 91054136 to 91054141 5 + TSS region transcription start site region 18824
Tssr18825 2 91054144 to 91054175 31 + TSS region transcription start site region 18825
Tssr18826 2 91054179 to 91054198 19 + TSS region transcription start site region 18826
Tssr18827 2 91054207 to 91054239 32 + TSS region transcription start site region 18827
Tssr18828 2 91054263 to 91054303 40 + TSS region transcription start site region 18828
Tssr18829 2 91054584 to 91054604 20 + TSS region transcription start site region 18829
Slc39a13 2 91061781 to 91070330 8549 - protein coding gene solute carrier family 39 (metal ion transporter), member 13
Tssr25147 2 91063116 to 91063125 9 - TSS region transcription start site region 25147
Gm39875 2 91063827 to 91065288 1461 + lncRNA gene predicted gene, 39875