Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:90605877-90945883

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39870 2 90624573 to 90628397 3824 + lncRNA gene predicted gene, 39870
Cpgi11882 2 90631961 to 90632122 161 CpG island CpG island 11882
Gm39871 2 90636116 to 90670296 34180 - lncRNA gene predicted gene, 39871
Tssr25134 2 90636864 to 90636874 10 - TSS region transcription start site region 25134
Tssr18758 2 90674912 to 90674919 7 + TSS region transcription start site region 18758
Tssr18759 2 90677208 to 90677236 28 + TSS region transcription start site region 18759
Nup160 2 90677215 to 90736328 59113 + protein coding gene nucleoporin 160
Cpgi11883 2 90678805 to 90679820 1015 CpG island CpG island 11883
Tssr18760 2 90679369 to 90679412 43 + TSS region transcription start site region 18760
Gm39872 2 90716031 to 90734151 18120 - lncRNA gene predicted gene, 39872
Tssr18761 2 90732739 to 90732758 19 + TSS region transcription start site region 18761
Tssr18762 2 90738431 to 90738441 10 + TSS region transcription start site region 18762
Tssr18763 2 90738460 to 90738471 11 + TSS region transcription start site region 18763
Cpgi11884 2 90745176 to 90746208 1032 CpG island CpG island 11884
Tssr25135 2 90745207 to 90745249 42 - TSS region transcription start site region 25135
Tssr25136 2 90745270 to 90745288 18 - TSS region transcription start site region 25136
Fnbp4 2 90745370 to 90781021 35651 + protein coding gene formin binding protein 4
Tssr18764 2 90745455 to 90745469 14 + TSS region transcription start site region 18764
Tssr18765 2 90745500 to 90745515 15 + TSS region transcription start site region 18765
Tssr18766 2 90745539 to 90745603 64 + TSS region transcription start site region 18766
Rpl30-ps3 2 90747616 to 90747963 347 - pseudogene ribosomal protein L30, pseudogene 3
Tssr18767 2 90768422 to 90768426 4 + TSS region transcription start site region 18767
Tssr18768 2 90773570 to 90773572 2 + TSS region transcription start site region 18768
Tssr18769 2 90775411 to 90775418 7 + TSS region transcription start site region 18769
Tssr18770 2 90775877 to 90775883 6 + TSS region transcription start site region 18770
Tssr18771 2 90777219 to 90777231 12 + TSS region transcription start site region 18771
Tssr18772 2 90777596 to 90777623 27 + TSS region transcription start site region 18772
Agbl2 2 90782587 to 90834272 51685 + protein coding gene ATP/GTP binding protein-like 2
Cpgi11885 2 90782949 to 90783627 678 CpG island CpG island 11885
Tssr25137 2 90783152 to 90783163 11 - TSS region transcription start site region 25137
Tssr18773 2 90783195 to 90783204 9 + TSS region transcription start site region 18773
Tssr18774 2 90783213 to 90783224 11 + TSS region transcription start site region 18774
Tssr18775 2 90783228 to 90783263 35 + TSS region transcription start site region 18775
Tssr18776 2 90783269 to 90783276 7 + TSS region transcription start site region 18776
Gm13772 2 90804260 to 90804576 316 - pseudogene predicted gene 13772
Tssr559 2 90816312 to 90816314 2 + TSS region transcription start site region 559
Cpgi11886 2 90846885 to 90847768 883 CpG island CpG island 11886
Tssr18777 2 90847149 to 90847160 11 + TSS region transcription start site region 18777
Mtch2 2 90847155 to 90866810 19655 + protein coding gene mitochondrial carrier 2
Tssr18778 2 90847207 to 90847294 87 + TSS region transcription start site region 18778
Tssr18779 2 90847492 to 90847504 12 + TSS region transcription start site region 18779
Tssr18780 2 90847539 to 90847550 11 + TSS region transcription start site region 18780
Tssr18781 2 90885421 to 90885426 5 + TSS region transcription start site region 18781
Tssr18782 2 90885450 to 90885459 9 + TSS region transcription start site region 18782
Tssr18783 2 90885475 to 90885501 26 + TSS region transcription start site region 18783
Tssr18784 2 90885503 to 90885523 20 + TSS region transcription start site region 18784
Tssr18785 2 90885527 to 90885561 34 + TSS region transcription start site region 18785
Cpgi11887 2 90885552 to 90886078 526 CpG island CpG island 11887
Tssr18786 2 90885764 to 90885771 7 + TSS region transcription start site region 18786
Tssr18787 2 90885788 to 90885849 61 + TSS region transcription start site region 18787
C1qtnf4 2 90885860 to 90890525 4665 + protein coding gene C1q and tumor necrosis factor related protein 4
Tssr18788 2 90885861 to 90885872 11 + TSS region transcription start site region 18788
Tssr18789 2 90885876 to 90885902 26 + TSS region transcription start site region 18789
Tssr18790 2 90885904 to 90885914 10 + TSS region transcription start site region 18790
Tssr18791 2 90885924 to 90885939 15 + TSS region transcription start site region 18791
Cpgi11888 2 90889192 to 90890656 1464 CpG island CpG island 11888
Tssr18792 2 90889893 to 90889904 11 + TSS region transcription start site region 18792
Tssr18793 2 90889906 to 90889954 48 + TSS region transcription start site region 18793
Tssr18794 2 90889962 to 90889994 32 + TSS region transcription start site region 18794
Tssr18795 2 90889995 to 90890011 16 + TSS region transcription start site region 18795
Tssr18796 2 90890250 to 90890263 13 + TSS region transcription start site region 18796
Gm32514 2 90891602 to 90893572 1970 - protein coding gene predicted gene, 32514
Ndufs3 2 90894636 to 90904721 10085 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S3
Tssr25138 2 90895341 to 90895344 3 - TSS region transcription start site region 25138
Cpgi11889 2 90904212 to 90905036 824 CpG island CpG island 11889
Tssr25139 2 90904649 to 90904727 78 - TSS region transcription start site region 25139
Tssr18797 2 90904733 to 90904747 14 + TSS region transcription start site region 18797
Kbtbd4 2 90904740 to 90910561 5821 + protein coding gene kelch repeat and BTB (POZ) domain containing 4
Tssr18798 2 90904756 to 90904778 22 + TSS region transcription start site region 18798
Tssr18799 2 90904789 to 90904798 9 + TSS region transcription start site region 18799
Tssr25140 2 90904919 to 90904940 21 - TSS region transcription start site region 25140
Tssr18800 2 90905043 to 90905058 15 + TSS region transcription start site region 18800
Tssr18801 2 90905060 to 90905075 15 + TSS region transcription start site region 18801
Tssr18802 2 90909186 to 90909198 12 + TSS region transcription start site region 18802
Ptpmt1 2 90910713 to 90918050 7337 - protein coding gene protein tyrosine phosphatase, mitochondrial 1
Cpgi11890 2 90917163 to 90918174 1011 CpG island CpG island 11890
Tssr18803 2 90917255 to 90917266 11 + TSS region transcription start site region 18803
Tssr18804 2 90917298 to 90917392 94 + TSS region transcription start site region 18804
Gm17661 2 90917643 to 90917914 271 + pseudogene predicted gene, 17661
Tssr25141 2 90917678 to 90917697 19 - TSS region transcription start site region 25141
Tssr25142 2 90917735 to 90917746 11 - TSS region transcription start site region 25142
Tssr18805 2 90917757 to 90917768 11 + TSS region transcription start site region 18805
Tssr25143 2 90917764 to 90917827 63 - TSS region transcription start site region 25143
Tssr18806 2 90917772 to 90917874 102 + TSS region transcription start site region 18806
Tssr25144 2 90917839 to 90917871 32 - TSS region transcription start site region 25144
Tssr25145 2 90917987 to 90918107 120 - TSS region transcription start site region 25145
Tssr25146 2 90918394 to 90918442 48 - TSS region transcription start site region 25146
Cpgi11891 2 90940036 to 90941342 1306 CpG island CpG island 11891
Celf1 2 90940387 to 91019497 79110 + protein coding gene CUGBP, Elav-like family member 1
Tssr18807 2 90940466 to 90940523 57 + TSS region transcription start site region 18807