Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:90527215-90886328

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc2 2 85893925 to 90580647 4686722 QTL colon tumor susceptibility 2
Ptprj 2 90429754 to 90580647 150893 - protein coding gene protein tyrosine phosphatase, receptor type, J
Tssr25103 2 90528890 to 90528903 13 - TSS region transcription start site region 25103
A630073K07Rik 2 90538228 to 90540831 2603 unclassified gene RIKEN cDNA A630073K07 gene
Tssr25104 2 90540807 to 90540811 4 - TSS region transcription start site region 25104
Tssr25105 2 90542798 to 90542828 30 - TSS region transcription start site region 25105
Tssr25106 2 90546939 to 90546943 4 - TSS region transcription start site region 25106
9630014C11Rik 2 90548178 to 90549084 906 unclassified gene RIKEN cDNA 9630014C11 gene
Tssr25107 2 90548394 to 90548407 13 - TSS region transcription start site region 25107
Tssr25108 2 90549072 to 90549092 20 - TSS region transcription start site region 25108
Tssr25109 2 90550121 to 90550145 24 - TSS region transcription start site region 25109
Tssr25110 2 90556273 to 90556317 44 - TSS region transcription start site region 25110
Tssr25111 2 90556357 to 90556368 11 - TSS region transcription start site region 25111
Tssr25112 2 90563158 to 90563175 17 - TSS region transcription start site region 25112
Tssr25113 2 90563189 to 90563203 14 - TSS region transcription start site region 25113
Tssr25114 2 90564505 to 90564526 21 - TSS region transcription start site region 25114
Tssr25115 2 90566755 to 90566767 12 - TSS region transcription start site region 25115
Tssr25116 2 90568633 to 90568652 19 - TSS region transcription start site region 25116
Tssr25117 2 90571971 to 90571992 21 - TSS region transcription start site region 25117
Tssr25118 2 90572087 to 90572110 23 - TSS region transcription start site region 25118
Tssr25119 2 90572116 to 90572144 28 - TSS region transcription start site region 25119
Tssr25120 2 90572203 to 90572215 12 - TSS region transcription start site region 25120
Tssr25121 2 90573551 to 90573569 18 - TSS region transcription start site region 25121
Tssr25122 2 90574609 to 90574624 15 - TSS region transcription start site region 25122
Tssr25123 2 90577394 to 90577402 8 - TSS region transcription start site region 25123
Tssr25124 2 90577831 to 90577843 12 - TSS region transcription start site region 25124
Tssr25125 2 90577865 to 90577888 23 - TSS region transcription start site region 25125
Cpgi11881 2 90579228 to 90581258 2030 CpG island CpG island 11881
Tssr25126 2 90579369 to 90579406 37 - TSS region transcription start site region 25126
Tssr25127 2 90579450 to 90579463 13 - TSS region transcription start site region 25127
Tssr18756 2 90579486 to 90579498 12 + TSS region transcription start site region 18756
Tssr25128 2 90580315 to 90580326 11 - TSS region transcription start site region 25128
Tssr25129 2 90580438 to 90580461 23 - TSS region transcription start site region 25129
Tssr25130 2 90580468 to 90580496 28 - TSS region transcription start site region 25130
Tssr25131 2 90580541 to 90580548 7 - TSS region transcription start site region 25131
Tssr25132 2 90580563 to 90580574 11 - TSS region transcription start site region 25132
Tssr25133 2 90580578 to 90580612 34 - TSS region transcription start site region 25133
Gm46752 2 90580784 to 90584989 4205 + lncRNA gene predicted gene, 46752
Tssr18757 2 90599517 to 90599518 1 + TSS region transcription start site region 18757
Gm39870 2 90624573 to 90628397 3824 + lncRNA gene predicted gene, 39870
Cpgi11882 2 90631961 to 90632122 161 CpG island CpG island 11882
Gm39871 2 90636116 to 90670296 34180 - lncRNA gene predicted gene, 39871
Tssr25134 2 90636864 to 90636874 10 - TSS region transcription start site region 25134
Tssr18758 2 90674912 to 90674919 7 + TSS region transcription start site region 18758
Tssr18759 2 90677208 to 90677236 28 + TSS region transcription start site region 18759
Nup160 2 90677215 to 90736328 59113 + protein coding gene nucleoporin 160
Cpgi11883 2 90678805 to 90679820 1015 CpG island CpG island 11883
Tssr18760 2 90679369 to 90679412 43 + TSS region transcription start site region 18760
Gm39872 2 90716031 to 90734151 18120 - lncRNA gene predicted gene, 39872
Tssr18761 2 90732739 to 90732758 19 + TSS region transcription start site region 18761
Tssr18762 2 90738431 to 90738441 10 + TSS region transcription start site region 18762
Tssr18763 2 90738460 to 90738471 11 + TSS region transcription start site region 18763
Cpgi11884 2 90745176 to 90746208 1032 CpG island CpG island 11884
Tssr25135 2 90745207 to 90745249 42 - TSS region transcription start site region 25135
Tssr25136 2 90745270 to 90745288 18 - TSS region transcription start site region 25136
Fnbp4 2 90745370 to 90781021 35651 + protein coding gene formin binding protein 4
Tssr18764 2 90745455 to 90745469 14 + TSS region transcription start site region 18764
Tssr18765 2 90745500 to 90745515 15 + TSS region transcription start site region 18765
Tssr18766 2 90745539 to 90745603 64 + TSS region transcription start site region 18766
Rpl30-ps3 2 90747616 to 90747963 347 - pseudogene ribosomal protein L30, pseudogene 3
Tssr18767 2 90768422 to 90768426 4 + TSS region transcription start site region 18767
Tssr18768 2 90773570 to 90773572 2 + TSS region transcription start site region 18768
Tssr18769 2 90775411 to 90775418 7 + TSS region transcription start site region 18769
Tssr18770 2 90775877 to 90775883 6 + TSS region transcription start site region 18770
Tssr18771 2 90777219 to 90777231 12 + TSS region transcription start site region 18771
Tssr18772 2 90777596 to 90777623 27 + TSS region transcription start site region 18772
Agbl2 2 90782587 to 90834272 51685 + protein coding gene ATP/GTP binding protein-like 2
Cpgi11885 2 90782949 to 90783627 678 CpG island CpG island 11885
Tssr25137 2 90783152 to 90783163 11 - TSS region transcription start site region 25137
Tssr18773 2 90783195 to 90783204 9 + TSS region transcription start site region 18773
Tssr18774 2 90783213 to 90783224 11 + TSS region transcription start site region 18774
Tssr18775 2 90783228 to 90783263 35 + TSS region transcription start site region 18775
Tssr18776 2 90783269 to 90783276 7 + TSS region transcription start site region 18776
Gm13772 2 90804260 to 90804576 316 - pseudogene predicted gene 13772
Tssr559 2 90816312 to 90816314 2 + TSS region transcription start site region 559
Cpgi11886 2 90846885 to 90847768 883 CpG island CpG island 11886
Tssr18777 2 90847149 to 90847160 11 + TSS region transcription start site region 18777
Mtch2 2 90847155 to 90866810 19655 + protein coding gene mitochondrial carrier 2
Tssr18778 2 90847207 to 90847294 87 + TSS region transcription start site region 18778
Tssr18779 2 90847492 to 90847504 12 + TSS region transcription start site region 18779
Tssr18780 2 90847539 to 90847550 11 + TSS region transcription start site region 18780
Tssr18781 2 90885421 to 90885426 5 + TSS region transcription start site region 18781
Tssr18782 2 90885450 to 90885459 9 + TSS region transcription start site region 18782
Tssr18783 2 90885475 to 90885501 26 + TSS region transcription start site region 18783
Tssr18784 2 90885503 to 90885523 20 + TSS region transcription start site region 18784
Tssr18785 2 90885527 to 90885561 34 + TSS region transcription start site region 18785
Cpgi11887 2 90885552 to 90886078 526 CpG island CpG island 11887
Tssr18786 2 90885764 to 90885771 7 + TSS region transcription start site region 18786
Tssr18787 2 90885788 to 90885849 61 + TSS region transcription start site region 18787
C1qtnf4 2 90885860 to 90890525 4665 + protein coding gene C1q and tumor necrosis factor related protein 4
Tssr18788 2 90885861 to 90885872 11 + TSS region transcription start site region 18788
Tssr18789 2 90885876 to 90885902 26 + TSS region transcription start site region 18789
Tssr18790 2 90885904 to 90885914 10 + TSS region transcription start site region 18790
Tssr18791 2 90885924 to 90885939 15 + TSS region transcription start site region 18791