Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:90227570-90687591

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc2 2 85893925 to 90580647 4686722 QTL colon tumor susceptibility 2
Tssr18750 2 90239478 to 90239501 23 + TSS region transcription start site region 18750
Gm18953 2 90239483 to 90241423 1940 + pseudogene predicted gene, 18953
Olfr142 2 90252069 to 90252986 917 - protein coding gene olfactory receptor 142
Olfr1271 2 90265511 to 90270490 4979 - protein coding gene olfactory receptor 1271
Olfr1272 2 90281647 to 90282573 926 - protein coding gene olfactory receptor 1272
Olfr1273-ps 2 90295936 to 90296859 923 - polymorphic pseudogene olfactory receptor 1273, pseudogene
Gm13769 2 90322200 to 90326360 4160 + protein coding gene predicted gene 13769
Gm39869 2 90351519 to 90353649 2130 - lncRNA gene predicted gene, 39869
Gm13767 2 90354656 to 90372596 17940 - pseudogene predicted gene 13767
Tssr18751 2 90373182 to 90373211 29 + TSS region transcription start site region 18751
Tssr18752 2 90395121 to 90395159 38 + TSS region transcription start site region 18752
Tssr25079 2 90395171 to 90395192 21 - TSS region transcription start site region 25079
Olfr1274-ps 2 90400640 to 90401674 1034 + protein coding gene olfactory receptor 1274, pseudogene
Ptprj 2 90429754 to 90580647 150893 - protein coding gene protein tyrosine phosphatase, receptor type, J
Tssr25080 2 90439658 to 90439688 30 - TSS region transcription start site region 25080
Tssr25081 2 90450726 to 90450729 3 - TSS region transcription start site region 25081
Tssr25082 2 90450805 to 90450820 15 - TSS region transcription start site region 25082
Tssr25083 2 90451252 to 90451273 21 - TSS region transcription start site region 25083
Tssr25084 2 90453306 to 90453344 38 - TSS region transcription start site region 25084
Tssr25085 2 90457165 to 90457196 31 - TSS region transcription start site region 25085
Tssr25086 2 90457570 to 90457591 21 - TSS region transcription start site region 25086
Tssr25087 2 90458173 to 90458189 16 - TSS region transcription start site region 25087
Tssr25088 2 90458313 to 90458327 14 - TSS region transcription start site region 25088
Tssr18753 2 90459634 to 90459656 22 + TSS region transcription start site region 18753
Tssr25089 2 90460695 to 90460718 23 - TSS region transcription start site region 25089
Tssr25090 2 90460735 to 90460746 11 - TSS region transcription start site region 25090
Tssr25091 2 90460893 to 90460905 12 - TSS region transcription start site region 25091
Tssr25092 2 90463107 to 90463130 23 - TSS region transcription start site region 25092
Tssr25093 2 90466727 to 90466751 24 - TSS region transcription start site region 25093
Tssr25094 2 90471145 to 90471177 32 - TSS region transcription start site region 25094
Tssr25095 2 90471248 to 90471259 11 - TSS region transcription start site region 25095
Tssr25096 2 90479148 to 90479155 7 - TSS region transcription start site region 25096
Tssr25097 2 90479165 to 90479178 13 - TSS region transcription start site region 25097
Tssr18754 2 90479228 to 90479238 10 + TSS region transcription start site region 18754
4933423P22Rik 2 90479236 to 90488425 9189 + antisense lncRNA gene RIKEN cDNA 4933423P22 gene
Tssr18755 2 90487741 to 90487749 8 + TSS region transcription start site region 18755
Tssr25098 2 90490796 to 90490809 13 - TSS region transcription start site region 25098
Tssr25099 2 90491080 to 90491088 8 - TSS region transcription start site region 25099
Tssr25100 2 90505909 to 90505913 4 - TSS region transcription start site region 25100
D2Mit272 2 90515788 to 90515903 115 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 272
2310079F09Rik 2 90519432 to 90520641 1209 unclassified gene RIKEN cDNA 2310079F09 gene
Tssr25101 2 90523109 to 90523117 8 - TSS region transcription start site region 25101
Tssr25102 2 90525032 to 90525045 13 - TSS region transcription start site region 25102
Tssr25103 2 90528890 to 90528903 13 - TSS region transcription start site region 25103
A630073K07Rik 2 90538228 to 90540831 2603 unclassified gene RIKEN cDNA A630073K07 gene
Tssr25104 2 90540807 to 90540811 4 - TSS region transcription start site region 25104
Tssr25105 2 90542798 to 90542828 30 - TSS region transcription start site region 25105
Tssr25106 2 90546939 to 90546943 4 - TSS region transcription start site region 25106
9630014C11Rik 2 90548178 to 90549084 906 unclassified gene RIKEN cDNA 9630014C11 gene
Tssr25107 2 90548394 to 90548407 13 - TSS region transcription start site region 25107
Tssr25108 2 90549072 to 90549092 20 - TSS region transcription start site region 25108
Tssr25109 2 90550121 to 90550145 24 - TSS region transcription start site region 25109
Tssr25110 2 90556273 to 90556317 44 - TSS region transcription start site region 25110
Tssr25111 2 90556357 to 90556368 11 - TSS region transcription start site region 25111
Tssr25112 2 90563158 to 90563175 17 - TSS region transcription start site region 25112
Tssr25113 2 90563189 to 90563203 14 - TSS region transcription start site region 25113
Tssr25114 2 90564505 to 90564526 21 - TSS region transcription start site region 25114
Tssr25115 2 90566755 to 90566767 12 - TSS region transcription start site region 25115
Tssr25116 2 90568633 to 90568652 19 - TSS region transcription start site region 25116
Tssr25117 2 90571971 to 90571992 21 - TSS region transcription start site region 25117
Tssr25118 2 90572087 to 90572110 23 - TSS region transcription start site region 25118
Tssr25119 2 90572116 to 90572144 28 - TSS region transcription start site region 25119
Tssr25120 2 90572203 to 90572215 12 - TSS region transcription start site region 25120
Tssr25121 2 90573551 to 90573569 18 - TSS region transcription start site region 25121
Tssr25122 2 90574609 to 90574624 15 - TSS region transcription start site region 25122
Tssr25123 2 90577394 to 90577402 8 - TSS region transcription start site region 25123
Tssr25124 2 90577831 to 90577843 12 - TSS region transcription start site region 25124
Tssr25125 2 90577865 to 90577888 23 - TSS region transcription start site region 25125
Cpgi11881 2 90579228 to 90581258 2030 CpG island CpG island 11881
Tssr25126 2 90579369 to 90579406 37 - TSS region transcription start site region 25126
Tssr25127 2 90579450 to 90579463 13 - TSS region transcription start site region 25127
Tssr18756 2 90579486 to 90579498 12 + TSS region transcription start site region 18756
Tssr25128 2 90580315 to 90580326 11 - TSS region transcription start site region 25128
Tssr25129 2 90580438 to 90580461 23 - TSS region transcription start site region 25129
Tssr25130 2 90580468 to 90580496 28 - TSS region transcription start site region 25130
Tssr25131 2 90580541 to 90580548 7 - TSS region transcription start site region 25131
Tssr25132 2 90580563 to 90580574 11 - TSS region transcription start site region 25132
Tssr25133 2 90580578 to 90580612 34 - TSS region transcription start site region 25133
Gm46752 2 90580784 to 90584989 4205 + lncRNA gene predicted gene, 46752
Tssr18757 2 90599517 to 90599518 1 + TSS region transcription start site region 18757
Gm39870 2 90624573 to 90628397 3824 + lncRNA gene predicted gene, 39870
Cpgi11882 2 90631961 to 90632122 161 CpG island CpG island 11882
Gm39871 2 90636116 to 90670296 34180 - lncRNA gene predicted gene, 39871
Tssr25134 2 90636864 to 90636874 10 - TSS region transcription start site region 25134
Tssr18758 2 90674912 to 90674919 7 + TSS region transcription start site region 18758
Tssr18759 2 90677208 to 90677236 28 + TSS region transcription start site region 18759
Nup160 2 90677215 to 90736328 59113 + protein coding gene nucleoporin 160
Cpgi11883 2 90678805 to 90679820 1015 CpG island CpG island 11883
Tssr18760 2 90679369 to 90679412 43 + TSS region transcription start site region 18760