Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:8581824-9771833

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm13255 2 8633937 to 8634483 546 + pseudogene predicted gene 13255
Tssr399 2 8730220 to 8730223 3 + TSS region transcription start site region 399
D2Mit117 2 8743596 to 8743770 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 117
Tssr16034 2 8797046 to 8797059 13 + TSS region transcription start site region 16034
Gm18434 2 8829240 to 8830394 1154 + pseudogene predicted gene, 18434
D2Dcr41 2 8845635 to 8845731 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 41
D2Mit358 2 8907393 to 8907473 80 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 358
D2Mit358S 2 8907490 to 8907612 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-358S
Gm30957 2 8946890 to 8975866 28976 + lncRNA gene predicted gene, 30957
Tssr16035 2 8946927 to 8946943 16 + TSS region transcription start site region 16035
Tssr16036 2 8946945 to 8946954 9 + TSS region transcription start site region 16036
Tssr16037 2 8946956 to 8946967 11 + TSS region transcription start site region 16037
Tssr16038 2 8947011 to 8947020 9 + TSS region transcription start site region 16038
Tssr16039 2 8950151 to 8950157 6 + TSS region transcription start site region 16039
Gm10854 2 9034200 to 9035203 1003 protein coding gene predicted gene 10854
Gm13217 2 9041124 to 9042484 1360 - pseudogene predicted gene 13217
Cpgi11181 2 9042537 to 9042688 151 CpG island CpG island 11181
Tssr22524 2 9141476 to 9141519 43 - TSS region transcription start site region 22524
Tssr16040 2 9141662 to 9141700 38 + TSS region transcription start site region 16040
Tssr22525 2 9175767 to 9175774 7 - TSS region transcription start site region 22525
Tssr22526 2 9176055 to 9176059 4 - TSS region transcription start site region 22526
Tssr22527 2 9176824 to 9176833 9 - TSS region transcription start site region 22527
Tssr22528 2 9176860 to 9176869 9 - TSS region transcription start site region 22528
Tssr22529 2 9177873 to 9177895 22 - TSS region transcription start site region 22529
Tssr16041 2 9178031 to 9178042 11 + TSS region transcription start site region 16041
Tssr22530 2 9178717 to 9178725 8 - TSS region transcription start site region 22530
Tssr16042 2 9187837 to 9187848 11 + TSS region transcription start site region 16042
1700061F12Rik 2 9189515 to 9197477 7962 + lincRNA gene RIKEN cDNA 1700061F12 gene
Tssr16043 2 9189546 to 9189557 11 + TSS region transcription start site region 16043
Tssr16044 2 9189558 to 9189563 5 + TSS region transcription start site region 16044
Tssr16045 2 9189567 to 9189574 7 + TSS region transcription start site region 16045
Tssr16046 2 9193478 to 9193505 27 + TSS region transcription start site region 16046
Gm23963 2 9240756 to 9240832 76 - miRNA gene predicted gene, 23963
Gm13221 2 9270080 to 9270509 429 - pseudogene predicted gene 13221
D2Dcr42 2 9271650 to 9271752 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 42
Tssr22531 2 9304860 to 9304863 3 - TSS region transcription start site region 22531
Tssr22532 2 9305047 to 9305052 5 - TSS region transcription start site region 22532
Tssr16047 2 9305327 to 9305332 5 + TSS region transcription start site region 16047
D2Dcr43 2 9308713 to 9308809 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 43
Tssr16048 2 9313363 to 9313366 3 + TSS region transcription start site region 16048
D2Dcr44 2 9336209 to 9336314 105 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 44
D2Mit359 2 9348540 to 9348645 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 359
Gm13219 2 9352431 to 9447676 95245 + lincRNA gene predicted gene 13219
Tssr16049 2 9352468 to 9352480 12 + TSS region transcription start site region 16049
Tssr16050 2 9352481 to 9352499 18 + TSS region transcription start site region 16050
Tssr16051 2 9368462 to 9368511 49 + TSS region transcription start site region 16051
Tssr16052 2 9369038 to 9369053 15 + TSS region transcription start site region 16052
Tssr16053 2 9369064 to 9369075 11 + TSS region transcription start site region 16053
Tssr22533 2 9375933 to 9375937 4 - TSS region transcription start site region 22533
Tssr16054 2 9376280 to 9376325 45 + TSS region transcription start site region 16054
Tssr22534 2 9377953 to 9377964 11 - TSS region transcription start site region 22534
Tssr16055 2 9378241 to 9378261 20 + TSS region transcription start site region 16055
Tssr22535 2 9520132 to 9520135 3 - TSS region transcription start site region 22535
Sluc16 2 9524642 to 9524778 136 QTL susceptibility to lung cancer 16
D2Mit5 2 9524642 to 9524778 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 5
Gm13220 2 9575836 to 9576343 507 + pseudogene predicted gene 13220
Gm13218 2 9591218 to 9592938 1720 - lincRNA gene predicted gene 13218
Tssr22536 2 9593808 to 9593828 20 - TSS region transcription start site region 22536
Tssr22537 2 9593989 to 9594002 13 - TSS region transcription start site region 22537
Tssr22538 2 9594061 to 9594086 25 - TSS region transcription start site region 22538
Tssr22539 2 9594132 to 9594144 12 - TSS region transcription start site region 22539
Tssr22540 2 9594168 to 9594179 11 - TSS region transcription start site region 22540
Tssr16056 2 9595626 to 9595634 8 + TSS region transcription start site region 16056
D2Dcr45 2 9602690 to 9602864 174 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 45
D2Dcr131 2 9602710 to 9602826 116 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 131
D2Mit314 2 9610521 to 9610707 186 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 314
D2Mit314S 2 9610688 to 9610816 128 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-314S
Gm37866 2 9630646 to 9631341 695 - unclassified gene predicted gene, 37866
Tssr16057 2 9681793 to 9681804 11 + TSS region transcription start site region 16057
Tssr16058 2 9681807 to 9681818 11 + TSS region transcription start site region 16058
Tssr22541 2 9691629 to 9691634 5 - TSS region transcription start site region 22541
Tssr16059 2 9693726 to 9693730 4 + TSS region transcription start site region 16059
Opfaq1 2 27132630 to 9671880 -17460750 QTL open field activity QTL 1