Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:84854215-86305282

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc43a1 2 84838857 to 84863586 24729 + protein coding gene solute carrier family 43, member 1
Cpgi11871 2 84865737 to 84866687 950 CpG island CpG island 11871
Cpgi11872 2 84871460 to 84873030 1570 CpG island CpG island 11872
Rtn4rl2 2 84871924 to 84886710 14786 - protein coding gene reticulon 4 receptor-like 2
Cpgi11873 2 84882607 to 84882988 381 CpG island CpG island 11873
Cpgi11874 2 84886202 to 84888423 2221 CpG island CpG island 11874
Tssr25059 2 84886439 to 84886441 2 - TSS region transcription start site region 25059
Tssr25060 2 84887008 to 84887044 36 - TSS region transcription start site region 25060
Cpgi11875 2 84889070 to 84889439 369 CpG island CpG island 11875
Tssr18708 2 84916123 to 84916129 6 + TSS region transcription start site region 18708
Gm24332 2 84928074 to 84928175 101 + miRNA gene predicted gene, 24332
Slc43a3 2 84936579 to 84958509 21930 + protein coding gene solute carrier family 43, member 3
Tssr18709 2 84936583 to 84936606 23 + TSS region transcription start site region 18709
Tssr18710 2 84936611 to 84936712 101 + TSS region transcription start site region 18710
Cpgi11876 2 84936616 to 84936865 249 CpG island CpG island 11876
Tssr554 2 84937250 to 84937273 23 + TSS region transcription start site region 554
Tssr18711 2 84937369 to 84937389 20 + TSS region transcription start site region 18711
Tssr18712 2 84937614 to 84937634 20 + TSS region transcription start site region 18712
Tssr18713 2 84937652 to 84937678 26 + TSS region transcription start site region 18713
Tssr25061 2 84938416 to 84938428 12 - TSS region transcription start site region 25061
Tssr18714 2 84952580 to 84952583 3 + TSS region transcription start site region 18714
Tssr18715 2 84958862 to 84958865 3 + TSS region transcription start site region 18715
D2Mit160 2 84973819 to 84973948 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 160
Tssr18716 2 84980458 to 84980462 4 + TSS region transcription start site region 18716
Prg2 2 84980461 to 84983632 3171 + protein coding gene proteoglycan 2, bone marrow
Gm39868 2 84983713 to 84992095 8382 - lncRNA gene predicted gene, 39868
Tssr18717 2 84988194 to 84988197 3 + TSS region transcription start site region 18717
Prg3 2 84988215 to 84993886 5671 + protein coding gene proteoglycan 3
P2rx3 2 84998583 to 85037462 38879 - protein coding gene purinergic receptor P2X, ligand-gated ion channel, 3
Tssr25062 2 85033913 to 85033916 3 - TSS region transcription start site region 25062
Tssr25063 2 85035491 to 85035506 15 - TSS region transcription start site region 25063
Cpgi11877 2 85036806 to 85037785 979 CpG island CpG island 11877
Tssr18718 2 85037169 to 85037205 36 + TSS region transcription start site region 18718
Tssr18719 2 85037212 to 85037302 90 + TSS region transcription start site region 18719
Ssrp1 2 85037234 to 85047109 9875 + protein coding gene structure specific recognition protein 1
Tssr18720 2 85037448 to 85037530 82 + TSS region transcription start site region 18720
Tssr18721 2 85037713 to 85037728 15 + TSS region transcription start site region 18721
Tssr18722 2 85039744 to 85039780 36 + TSS region transcription start site region 18722
Tssr18723 2 85040922 to 85040959 37 + TSS region transcription start site region 18723
Cpgi11878 2 85047635 to 85048799 1164 CpG island CpG island 11878
Tssr18724 2 85048021 to 85048093 72 + TSS region transcription start site region 18724
Tnks1bp1 2 85048022 to 85073048 25026 + protein coding gene tankyrase 1 binding protein 1
Tssr555 2 85048190 to 85048228 38 + TSS region transcription start site region 555
Tssr18725 2 85048487 to 85048503 16 + TSS region transcription start site region 18725
Tssr18726 2 85050439 to 85050500 61 + TSS region transcription start site region 18726
Tssr18727 2 85060898 to 85060918 20 + TSS region transcription start site region 18727
Tssr18728 2 85060937 to 85060960 23 + TSS region transcription start site region 18728
Tssr18729 2 85060961 to 85060973 12 + TSS region transcription start site region 18729
4930443O20Rik 2 85073614 to 85086461 12847 - lncRNA gene RIKEN cDNA 4930443O20 gene
Tssr25064 2 85086456 to 85086464 8 - TSS region transcription start site region 25064
Tssr25065 2 85086469 to 85086498 29 - TSS region transcription start site region 25065
Tssr25066 2 85086511 to 85086516 5 - TSS region transcription start site region 25066
1700065F09Rik 2 85086619 to 85086979 360 unclassified gene RIKEN cDNA 1700065F09 gene
Tssr18730 2 85099144 to 85099185 41 + TSS region transcription start site region 18730
Tssr18731 2 85136343 to 85136354 11 + TSS region transcription start site region 18731
Tssr18732 2 85136355 to 85136371 16 + TSS region transcription start site region 18732
Aplnr 2 85136360 to 85139923 3563 + protein coding gene apelin receptor
Tssr18733 2 85136374 to 85136439 65 + TSS region transcription start site region 18733
Tssr18734 2 85136448 to 85136459 11 + TSS region transcription start site region 18734
Tssr18735 2 85136470 to 85136481 11 + TSS region transcription start site region 18735
Tssr18736 2 85136522 to 85136531 9 + TSS region transcription start site region 18736
Tssr18737 2 85136541 to 85136546 5 + TSS region transcription start site region 18737
Tssr18738 2 85136600 to 85136623 23 + TSS region transcription start site region 18738
Cpgi11879 2 85136696 to 85137421 725 CpG island CpG island 11879
Gm13712 2 85156101 to 85158642 2541 - pseudogene predicted gene 13712
Tssr25067 2 85157774 to 85157808 34 - TSS region transcription start site region 25067
Gm13713 2 85160778 to 85193325 32547 + antisense lncRNA gene predicted gene 13713
Lrrc55 2 85188067 to 85198926 10859 - protein coding gene leucine rich repeat containing 55
Tssr25068 2 85196697 to 85196708 11 - TSS region transcription start site region 25068
Gm13716 2 85196932 to 85198675 1743 + antisense lncRNA gene predicted gene 13716
Tssr25069 2 85198738 to 85198780 42 - TSS region transcription start site region 25069
Gm13715 2 85233675 to 85243678 10003 + lincRNA gene predicted gene 13715
Tssr556 2 85260099 to 85260110 11 + TSS region transcription start site region 556
Gm13714 2 85268013 to 85268233 220 - pseudogene predicted gene 13714
Olfr987 2 85330967 to 85331896 929 - protein coding gene olfactory receptor 987
Olfr988 2 85352995 to 85353924 929 - protein coding gene olfactory receptor 988
Olfr989-ps1 2 85378754 to 85379527 773 - pseudogene olfactory receptor 989, pseudogene 1
Olfr990-ps1 2 85388135 to 85389033 898 - pseudogene olfactory receptor 990, pseudogene 1
Olfr991-ps1 2 85397709 to 85398616 907 - pseudogene olfactory receptor 991, pseudogene 1
Olfr992 2 85399602 to 85400531 929 - protein coding gene olfactory receptor 992
Olfr993 2 85413933 to 85414877 944 - protein coding gene olfactory receptor 993
Gm23716 2 85420137 to 85420280 143 + snoRNA gene predicted gene, 23716
Olfr994 2 85429883 to 85436225 6342 - protein coding gene olfactory receptor 994
Olfr995 2 85438209 to 85439156 947 - protein coding gene olfactory receptor 995
4833423E24Rik 2 85484092 to 85518935 34843 - protein coding gene RIKEN cDNA 4833423E24 gene
Tssr25070 2 85518966 to 85518973 7 - TSS region transcription start site region 25070
Tssr25071 2 85519018 to 85519033 15 - TSS region transcription start site region 25071
Tssr25072 2 85519045 to 85519056 11 - TSS region transcription start site region 25072
Tssr25073 2 85536667 to 85536695 28 - TSS region transcription start site region 25073
Olfr996 2 85579215 to 85580282 1067 + protein coding gene olfactory receptor 996
Olfr997-ps1 2 85585104 to 85586039 935 + pseudogene olfactory receptor 997, pseudogene 1
Olfr998 2 85590510 to 85591521 1011 + protein coding gene olfactory receptor 998
Olfr999-ps1 2 85601769 to 85602717 948 - pseudogene olfactory receptor 999, pseudogene 1
Olfr1000 2 85607964 to 85608908 944 - protein coding gene olfactory receptor 1000
Olfr1001-ps1 2 85633431 to 85634372 941 + polymorphic pseudogene olfactory receptor 1001, pseudogene 1
Olfr1002 2 85647363 to 85648319 956 - protein coding gene olfactory receptor 1002
Olfr1003-ps1 2 85653334 to 85654050 716 + pseudogene olfactory receptor 1003, pseudogene 1
Olfr1004-ps1 2 85656256 to 85656835 579 - pseudogene olfactory receptor 1004, pseudogene 1
Olfr154 2 85663377 to 85664455 1078 - protein coding gene olfactory receptor 154
Olfr1005-ps1 2 85669822 to 85672240 2418 + pseudogene olfactory receptor 1005, pseudogene 1
Olfr1006 2 85674211 to 85678741 4530 - protein coding gene olfactory receptor 1006
Olfr1007-ps1 2 85683262 to 85683393 131 + pseudogene olfactory receptor 1007, pseudogene 1
Olfr1008 2 85689431 to 85690372 941 + protein coding gene olfactory receptor 1008
Olfr1009 2 85721407 to 85722351 944 + protein coding gene olfactory receptor 1009
Olfr1010 2 85753363 to 85754306 943 + polymorphic pseudogene olfactory receptor 1010
Olfr1012 2 85759439 to 85760374 935 - protein coding gene olfactory receptor 1012
Olfr1013 2 85769803 to 85770720 917 + protein coding gene olfactory receptor 1013
Olfr1014 2 85776586 to 85777503 917 + protein coding gene olfactory receptor 1014
Gm49332 2 85777918 to 85778146 228 + pseudogene predicted gene, 49332
Olfr1015 2 85785474 to 85786489 1015 + protein coding gene olfactory receptor 1015
Olfr1016 2 85799339 to 85800268 929 - protein coding gene olfactory receptor 1016
Olfr1017-ps1 2 85808458 to 85808796 338 - pseudogene olfactory receptor 1017, pseudogene 1
Gm13720 2 85816013 to 85816208 195 - pseudogene predicted gene 13720
Olfr1018 2 85822973 to 85823908 935 + protein coding gene olfactory receptor 1018
Olfr1019 2 85840857 to 85841789 932 - protein coding gene olfactory receptor 1019
Olfr1020 2 85849420 to 85850498 1078 + protein coding gene olfactory receptor 1020
Olfr1021-ps1 2 85863413 to 85864364 951 + polymorphic pseudogene olfactory receptor 1021, pseudogene 1
Olfr1022 2 85868594 to 85869541 947 + protein coding gene olfactory receptor 1022
Gm24037 2 85885155 to 85885334 179 - snRNA gene predicted gene, 24037
Olfr1023 2 85886802 to 85887737 935 + protein coding gene olfactory receptor 1023
Scc2 2 85893925 to 90580647 4686722 QTL colon tumor susceptibility 2
D2Mit14a 2 85893925 to 85894063 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 14a
Elsgp3 2 85893925 to 85894063 138 QTL elevated serum gp70 3
Etohc2 2 85893925 to 85894063 138 QTL ethanol consumption 2
Gm40020 2 85899003 to 85900555 1552 - pseudogene predicted gene, 40020
Olfr1024 2 85904069 to 85905052 983 - protein coding gene olfactory receptor 1024
Olfr1025-ps1 2 85917927 to 85918753 826 + pseudogene olfactory receptor 1025, pseudogene 1
Olfr1026 2 85923270 to 85924193 923 + protein coding gene olfactory receptor 1026
Olfr1027-ps1 2 85932145 to 85933438 1293 + pseudogene olfactory receptor 1027, pseudogene 1
Olfr1028 2 85951065 to 85952039 974 + protein coding gene olfactory receptor 1028
D2Mit14b 2 85971720 to 85971860 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 14b
Olfr1029 2 85975213 to 85976273 1060 + protein coding gene olfactory receptor 1029
Olfr1030 2 85979312 to 85984798 5486 + protein coding gene olfactory receptor 1030
Olfr1031 2 85991819 to 85992829 1010 + protein coding gene olfactory receptor 1031
Olfr1032 2 86007778 to 86008710 932 + protein coding gene olfactory receptor 1032
Olfr1033 2 86020640 to 86044808 24168 + protein coding gene olfactory receptor 1033
Olfr1034 2 86046444 to 86047466 1022 + protein coding gene olfactory receptor 1034
Olfr1035-ps1 2 86055999 to 86056964 965 - pseudogene olfactory receptor 1035, pseudogene 1
Olfr1036 2 86074704 to 86075718 1014 + protein coding gene olfactory receptor 1036
Olfr1037 2 86084730 to 86085854 1124 - protein coding gene olfactory receptor 1037
Gm13722 2 86090335 to 86093378 3043 - pseudogene predicted gene 13722
Olfr1038-ps 2 86120224 to 86123037 2813 + polymorphic pseudogene olfactory receptor 1038, pseudogene
Olfr1039 2 86130702 to 86131661 959 - protein coding gene olfactory receptor 1039
Olfr1040 2 86145791 to 86146732 941 - protein coding gene olfactory receptor 1040
Olfr1041-ps1 2 86149343 to 86149613 270 - pseudogene olfactory receptor 1041, pseudogene 1
Olfr1042 2 86159345 to 86160441 1096 - protein coding gene olfactory receptor 1042
Olfr1043 2 86162003 to 86162947 944 - protein coding gene olfactory receptor 1043
Olfr1044 2 86170871 to 86171815 944 - protein coding gene olfactory receptor 1044
Olfr52 2 86181150 to 86182109 959 - protein coding gene olfactory receptor 52
Olfr1045 2 86197803 to 86198750 947 - protein coding gene olfactory receptor 1045
Olfr1046 2 86215975 to 86217711 1736 - protein coding gene olfactory receptor 1046
Olfr1047 2 86228010 to 86228969 959 - protein coding gene olfactory receptor 1047
Olfr1048 2 86235871 to 86236833 962 - protein coding gene olfactory receptor 1048
Olfr1049 2 86254765 to 86258320 3555 - protein coding gene olfactory receptor 1049
Olfr1050-ps1 2 86267879 to 86268825 946 - pseudogene olfactory receptor 1050, pseudogene 1
Olfr1051 2 86275559 to 86276485 926 - protein coding gene olfactory receptor 1051
Olfr1052 2 86297818 to 86298756 938 + protein coding gene olfactory receptor 1052
Mobq6 2 181254801 to 85893925 -95360876 QTL multigenic obesity QTL 6