Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:84728215-85253886

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr18677 2 84734050 to 84734107 57 + TSS region transcription start site region 18677
Ypel4 2 84734058 to 84738655 4597 + protein coding gene yippee like 4
Cpgi11864 2 84736715 to 84736960 245 CpG island CpG island 11864
Tssr18678 2 84738135 to 84738138 3 + TSS region transcription start site region 18678
Mir130a 2 84741115 to 84741178 63 - miRNA gene microRNA 130a
Gm19426 2 84742169 to 84743655 1486 - protein coding gene predicted gene, 19426
Cpgi11865 2 84742752 to 84743969 1217 CpG island CpG island 11865
Tssr18679 2 84742921 to 84742939 18 + TSS region transcription start site region 18679
Tssr18680 2 84742998 to 84743012 14 + TSS region transcription start site region 18680
Tssr25039 2 84743692 to 84743701 9 - TSS region transcription start site region 25039
Tssr25040 2 84743749 to 84743764 15 - TSS region transcription start site region 25040
Tssr25041 2 84743767 to 84743783 16 - TSS region transcription start site region 25041
Tssr18681 2 84743880 to 84743909 29 + TSS region transcription start site region 18681
Serping1 2 84765387 to 84775444 10057 - protein coding gene serine (or cysteine) peptidase inhibitor, clade G, member 1
Tssr25042 2 84773241 to 84773252 11 - TSS region transcription start site region 25042
Tssr25043 2 84773257 to 84773267 10 - TSS region transcription start site region 25043
Tssr18682 2 84773305 to 84773332 27 + TSS region transcription start site region 18682
Tssr25044 2 84773338 to 84773371 33 - TSS region transcription start site region 25044
Tssr25045 2 84773372 to 84773405 33 - TSS region transcription start site region 25045
Tssr25046 2 84773428 to 84773464 36 - TSS region transcription start site region 25046
Tssr18683 2 84773430 to 84773479 49 + TSS region transcription start site region 18683
Tssr25047 2 84773514 to 84773553 39 - TSS region transcription start site region 25047
Tssr25048 2 84773637 to 84773649 12 - TSS region transcription start site region 25048
Cpgi11866 2 84774792 to 84775039 247 CpG island CpG island 11866
Tssr25049 2 84774796 to 84774807 11 - TSS region transcription start site region 25049
Tssr25050 2 84774809 to 84774860 51 - TSS region transcription start site region 25050
Tssr25051 2 84774863 to 84774876 13 - TSS region transcription start site region 25051
Tssr25052 2 84775388 to 84775411 23 - TSS region transcription start site region 25052
Tssr25053 2 84775420 to 84775438 18 - TSS region transcription start site region 25053
Gm36596 2 84778859 to 84791354 12495 - lncRNA gene predicted gene, 36596
Tssr18684 2 84794272 to 84794273 1 + TSS region transcription start site region 18684
Tssr18685 2 84798280 to 84798295 15 + TSS region transcription start site region 18685
Tssr18686 2 84798401 to 84798417 16 + TSS region transcription start site region 18686
Cpgi11867 2 84798487 to 84799016 529 CpG island CpG island 11867
Tssr18687 2 84798552 to 84798588 36 + TSS region transcription start site region 18687
Tssr18688 2 84798797 to 84798805 8 + TSS region transcription start site region 18688
Ube2l6 2 84798828 to 84810003 11175 + protein coding gene ubiquitin-conjugating enzyme E2L 6
Tssr18689 2 84798841 to 84798861 20 + TSS region transcription start site region 18689
Tssr18690 2 84798873 to 84798888 15 + TSS region transcription start site region 18690
Tssr25054 2 84799277 to 84799291 14 - TSS region transcription start site region 25054
Tssr18691 2 84799420 to 84799443 23 + TSS region transcription start site region 18691
Tssr18692 2 84799444 to 84799469 25 + TSS region transcription start site region 18692
Tssr25055 2 84800442 to 84800457 15 - TSS region transcription start site region 25055
Tssr18693 2 84809212 to 84809235 23 + TSS region transcription start site region 18693
Tssr18694 2 84809306 to 84809323 17 + TSS region transcription start site region 18694
Tssr18695 2 84809344 to 84809356 12 + TSS region transcription start site region 18695
Tssr18696 2 84809395 to 84809401 6 + TSS region transcription start site region 18696
Tssr18697 2 84809499 to 84809523 24 + TSS region transcription start site region 18697
Tssr18698 2 84809679 to 84809711 32 + TSS region transcription start site region 18698
Smtnl1 2 84811176 to 84822652 11476 - protein coding gene smoothelin-like 1
Tssr25056 2 84816108 to 84816147 39 - TSS region transcription start site region 25056
Iba1 2 84817543 to 84817798 255 QTL induction of brown adipocytes 1
D2Mit66 2 84817543 to 84817798 255 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 66
Mchq17 2 84817543 to 84817798 255 QTL mean corpuscular hemoglobin QTL 17
Tssr25057 2 84822526 to 84822542 16 - TSS region transcription start site region 25057
Tssr25058 2 84822546 to 84822593 47 - TSS region transcription start site region 25058
Cpgi11868 2 84826821 to 84827150 329 CpG island CpG island 11868
Tssr18699 2 84827012 to 84827067 55 + TSS region transcription start site region 18699
Timm10 2 84827021 to 84830213 3192 + protein coding gene translocase of inner mitochondrial membrane 10
Tssr18700 2 84827079 to 84827098 19 + TSS region transcription start site region 18700
Cpgi11869 2 84827491 to 84827843 352 CpG island CpG island 11869
D930003E18Rik 2 84838850 to 84840332 1482 unclassified non-coding RNA gene RIKEN cDNA D930003E18 gene
Slc43a1 2 84838857 to 84863586 24729 + protein coding gene solute carrier family 43, member 1
Cpgi11870 2 84839217 to 84841117 1900 CpG island CpG island 11870
Tssr18701 2 84839408 to 84839424 16 + TSS region transcription start site region 18701
Tssr18702 2 84840347 to 84840364 17 + TSS region transcription start site region 18702
Tssr18703 2 84840394 to 84840437 43 + TSS region transcription start site region 18703
Tssr18704 2 84840612 to 84840640 28 + TSS region transcription start site region 18704
Tssr18705 2 84840649 to 84840662 13 + TSS region transcription start site region 18705
Tssr18706 2 84840677 to 84840688 11 + TSS region transcription start site region 18706
Tssr18707 2 84851441 to 84851462 21 + TSS region transcription start site region 18707
Cpgi11871 2 84865737 to 84866687 950 CpG island CpG island 11871
Cpgi11872 2 84871460 to 84873030 1570 CpG island CpG island 11872
Rtn4rl2 2 84871924 to 84886710 14786 - protein coding gene reticulon 4 receptor-like 2
Cpgi11873 2 84882607 to 84882988 381 CpG island CpG island 11873
Cpgi11874 2 84886202 to 84888423 2221 CpG island CpG island 11874
Tssr25059 2 84886439 to 84886441 2 - TSS region transcription start site region 25059
Tssr25060 2 84887008 to 84887044 36 - TSS region transcription start site region 25060
Cpgi11875 2 84889070 to 84889439 369 CpG island CpG island 11875
Tssr18708 2 84916123 to 84916129 6 + TSS region transcription start site region 18708
Gm24332 2 84928074 to 84928175 101 + miRNA gene predicted gene, 24332
Slc43a3 2 84936579 to 84958509 21930 + protein coding gene solute carrier family 43, member 3
Tssr18709 2 84936583 to 84936606 23 + TSS region transcription start site region 18709
Tssr18710 2 84936611 to 84936712 101 + TSS region transcription start site region 18710
Cpgi11876 2 84936616 to 84936865 249 CpG island CpG island 11876
Tssr554 2 84937250 to 84937273 23 + TSS region transcription start site region 554
Tssr18711 2 84937369 to 84937389 20 + TSS region transcription start site region 18711
Tssr18712 2 84937614 to 84937634 20 + TSS region transcription start site region 18712
Tssr18713 2 84937652 to 84937678 26 + TSS region transcription start site region 18713
Tssr25061 2 84938416 to 84938428 12 - TSS region transcription start site region 25061
Tssr18714 2 84952580 to 84952583 3 + TSS region transcription start site region 18714
Tssr18715 2 84958862 to 84958865 3 + TSS region transcription start site region 18715
D2Mit160 2 84973819 to 84973948 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 160
Tssr18716 2 84980458 to 84980462 4 + TSS region transcription start site region 18716
Prg2 2 84980461 to 84983632 3171 + protein coding gene proteoglycan 2, bone marrow
Gm39868 2 84983713 to 84992095 8382 - lncRNA gene predicted gene, 39868
Tssr18717 2 84988194 to 84988197 3 + TSS region transcription start site region 18717
Prg3 2 84988215 to 84993886 5671 + protein coding gene proteoglycan 3
P2rx3 2 84998583 to 85037462 38879 - protein coding gene purinergic receptor P2X, ligand-gated ion channel, 3
Tssr25062 2 85033913 to 85033916 3 - TSS region transcription start site region 25062
Tssr25063 2 85035491 to 85035506 15 - TSS region transcription start site region 25063
Cpgi11877 2 85036806 to 85037785 979 CpG island CpG island 11877
Tssr18718 2 85037169 to 85037205 36 + TSS region transcription start site region 18718
Tssr18719 2 85037212 to 85037302 90 + TSS region transcription start site region 18719
Ssrp1 2 85037234 to 85047109 9875 + protein coding gene structure specific recognition protein 1
Tssr18720 2 85037448 to 85037530 82 + TSS region transcription start site region 18720
Tssr18721 2 85037713 to 85037728 15 + TSS region transcription start site region 18721
Tssr18722 2 85039744 to 85039780 36 + TSS region transcription start site region 18722
Tssr18723 2 85040922 to 85040959 37 + TSS region transcription start site region 18723
Cpgi11878 2 85047635 to 85048799 1164 CpG island CpG island 11878
Tssr18724 2 85048021 to 85048093 72 + TSS region transcription start site region 18724
Tnks1bp1 2 85048022 to 85073048 25026 + protein coding gene tankyrase 1 binding protein 1
Tssr555 2 85048190 to 85048228 38 + TSS region transcription start site region 555
Tssr18725 2 85048487 to 85048503 16 + TSS region transcription start site region 18725
Tssr18726 2 85050439 to 85050500 61 + TSS region transcription start site region 18726
Tssr18727 2 85060898 to 85060918 20 + TSS region transcription start site region 18727
Tssr18728 2 85060937 to 85060960 23 + TSS region transcription start site region 18728
Tssr18729 2 85060961 to 85060973 12 + TSS region transcription start site region 18729
4930443O20Rik 2 85073614 to 85086461 12847 - lncRNA gene RIKEN cDNA 4930443O20 gene
Tssr25064 2 85086456 to 85086464 8 - TSS region transcription start site region 25064
Tssr25065 2 85086469 to 85086498 29 - TSS region transcription start site region 25065
Tssr25066 2 85086511 to 85086516 5 - TSS region transcription start site region 25066
1700065F09Rik 2 85086619 to 85086979 360 unclassified gene RIKEN cDNA 1700065F09 gene
Tssr18730 2 85099144 to 85099185 41 + TSS region transcription start site region 18730
Tssr18731 2 85136343 to 85136354 11 + TSS region transcription start site region 18731
Tssr18732 2 85136355 to 85136371 16 + TSS region transcription start site region 18732
Aplnr 2 85136360 to 85139923 3563 + protein coding gene apelin receptor
Tssr18733 2 85136374 to 85136439 65 + TSS region transcription start site region 18733
Tssr18734 2 85136448 to 85136459 11 + TSS region transcription start site region 18734
Tssr18735 2 85136470 to 85136481 11 + TSS region transcription start site region 18735
Tssr18736 2 85136522 to 85136531 9 + TSS region transcription start site region 18736
Tssr18737 2 85136541 to 85136546 5 + TSS region transcription start site region 18737
Tssr18738 2 85136600 to 85136623 23 + TSS region transcription start site region 18738
Cpgi11879 2 85136696 to 85137421 725 CpG island CpG island 11879
Gm13712 2 85156101 to 85158642 2541 - pseudogene predicted gene 13712
Tssr25067 2 85157774 to 85157808 34 - TSS region transcription start site region 25067
Gm13713 2 85160778 to 85193325 32547 + antisense lncRNA gene predicted gene 13713
Lrrc55 2 85188067 to 85198926 10859 - protein coding gene leucine rich repeat containing 55
Tssr25068 2 85196697 to 85196708 11 - TSS region transcription start site region 25068
Gm13716 2 85196932 to 85198675 1743 + antisense lncRNA gene predicted gene 13716
Tssr25069 2 85198738 to 85198780 42 - TSS region transcription start site region 25069
Gm13715 2 85233675 to 85243678 10003 + lincRNA gene predicted gene 13715