Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:83911992-84811996

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capsq1 2 27712048 to 84183040 56470992 QTL capsaicin sensitivity related QTL 1
Zswim2 2 83915079 to 83941228 26149 - protein coding gene zinc finger SWIM-type containing 2
Tssr24956 2 83917362 to 83917378 16 - TSS region transcription start site region 24956
Cpgi11857 2 83941022 to 83941302 280 CpG island CpG island 11857
Tssr24957 2 83941201 to 83941213 12 - TSS region transcription start site region 24957
Tssr24958 2 83941220 to 83941230 10 - TSS region transcription start site region 24958
Gm13698 2 83955693 to 83958185 2492 + protein coding gene predicted gene 13698
Gm13693 2 83961503 to 83963995 2492 + protein coding gene predicted gene 13693
Gm13695 2 83967313 to 83969805 2492 + protein coding gene predicted gene 13695
Gm13696 2 83973123 to 83975615 2492 + protein coding gene predicted gene 13696
Gm13694 2 83978933 to 83981425 2492 + protein coding gene predicted gene 13694
Gm13697 2 83984743 to 83987235 2492 + protein coding gene predicted gene 13697
Gm13691 2 83990553 to 83993045 2492 + protein coding gene predicted gene 13691
Tssr552 2 84018732 to 84018751 19 + TSS region transcription start site region 552
Gm13692 2 84034243 to 84034613 370 - pseudogene predicted gene 13692
D2Mit382 2 84052416 to 84052539 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 382
Gm13702 2 84144890 to 84145714 824 + pseudogene predicted gene 13702
Gm25972 2 84150055 to 84150155 100 + miRNA gene predicted gene, 25972
D2Mit126 2 84182854 to 84183040 186 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 126
Gm13711 2 84317339 to 84318311 972 - pseudogene predicted gene 13711
Calcrl 2 84330626 to 84425411 94785 - protein coding gene calcitonin receptor-like
Tssr24959 2 84331508 to 84331519 11 - TSS region transcription start site region 24959
Tssr24960 2 84332087 to 84332104 17 - TSS region transcription start site region 24960
Tssr24961 2 84333544 to 84333558 14 - TSS region transcription start site region 24961
Tssr24962 2 84342545 to 84342557 12 - TSS region transcription start site region 24962
Tssr24963 2 84342601 to 84342614 13 - TSS region transcription start site region 24963
Tssr24964 2 84342793 to 84342804 11 - TSS region transcription start site region 24964
Tssr24965 2 84343893 to 84343906 13 - TSS region transcription start site region 24965
Tssr24966 2 84345223 to 84345230 7 - TSS region transcription start site region 24966
Tssr24967 2 84345673 to 84345677 4 - TSS region transcription start site region 24967
Tssr24968 2 84356396 to 84356412 16 - TSS region transcription start site region 24968
Tssr24969 2 84359707 to 84359714 7 - TSS region transcription start site region 24969
Tssr24970 2 84361992 to 84361996 4 - TSS region transcription start site region 24970
Tssr553 2 84383979 to 84383982 3 - TSS region transcription start site region 553
Tssr24971 2 84387189 to 84387192 3 - TSS region transcription start site region 24971
Tssr24972 2 84389698 to 84389707 9 - TSS region transcription start site region 24972
Tssr24973 2 84389755 to 84389765 10 - TSS region transcription start site region 24973
Tssr24974 2 84389796 to 84389813 17 - TSS region transcription start site region 24974
Tssr24975 2 84390796 to 84390809 13 - TSS region transcription start site region 24975
Tssr24976 2 84393352 to 84393354 2 - TSS region transcription start site region 24976
Tssr24977 2 84405370 to 84405396 26 - TSS region transcription start site region 24977
Tssr24978 2 84407577 to 84407588 11 - TSS region transcription start site region 24978
Tssr24979 2 84407787 to 84407790 3 - TSS region transcription start site region 24979
Tssr24980 2 84412640 to 84412687 47 - TSS region transcription start site region 24980
Tssr24981 2 84414179 to 84414183 4 - TSS region transcription start site region 24981
Tssr24982 2 84416622 to 84416633 11 - TSS region transcription start site region 24982
Tssr24983 2 84421389 to 84421402 13 - TSS region transcription start site region 24983
Tssr24984 2 84422498 to 84422518 20 - TSS region transcription start site region 24984
Tssr24985 2 84424423 to 84424432 9 - TSS region transcription start site region 24985
Tssr24986 2 84425258 to 84425273 15 - TSS region transcription start site region 24986
Tfpi 2 84432855 to 84476775 43920 - protein coding gene tissue factor pathway inhibitor
Tssr24987 2 84433098 to 84433109 11 - TSS region transcription start site region 24987
Tssr24988 2 84434288 to 84434300 12 - TSS region transcription start site region 24988
Tssr24989 2 84442669 to 84442681 12 - TSS region transcription start site region 24989
Tssr24990 2 84442782 to 84442793 11 - TSS region transcription start site region 24990
Tssr24991 2 84443156 to 84443177 21 - TSS region transcription start site region 24991
Tssr24992 2 84469501 to 84469504 3 - TSS region transcription start site region 24992
Tssr24993 2 84473994 to 84474008 14 - TSS region transcription start site region 24993
Tssr24994 2 84474590 to 84474600 10 - TSS region transcription start site region 24994
Tssr24995 2 84476725 to 84476788 63 - TSS region transcription start site region 24995
Cpgi11858 2 84484925 to 84485245 320 CpG island CpG island 11858
Tssr24996 2 84499524 to 84499570 46 - TSS region transcription start site region 24996
Gm13710 2 84500748 to 84506873 6125 - lincRNA gene predicted gene 13710
Tssr24997 2 84501301 to 84501332 31 - TSS region transcription start site region 24997
Tssr24998 2 84501404 to 84501417 13 - TSS region transcription start site region 24998
Tssr24999 2 84513645 to 84513662 17 - TSS region transcription start site region 24999
Tssr25000 2 84513687 to 84513695 8 - TSS region transcription start site region 25000
Tssr18666 2 84515551 to 84515590 39 + TSS region transcription start site region 18666
Tssr18667 2 84525471 to 84525475 4 + TSS region transcription start site region 18667
Tssr25001 2 84531316 to 84531331 15 - TSS region transcription start site region 25001
Tssr25002 2 84531346 to 84531357 11 - TSS region transcription start site region 25002
Tssr25003 2 84531360 to 84531389 29 - TSS region transcription start site region 25003
Tssr25004 2 84531426 to 84531437 11 - TSS region transcription start site region 25004
Tssr18668 2 84549933 to 84549945 12 + TSS region transcription start site region 18668
Ctnnd1 2 84600071 to 84650765 50694 - protein coding gene catenin (cadherin associated protein), delta 1
Gm28635 2 84601439 to 84678041 76602 - protein coding gene predicted gene 28635
Tssr25005 2 84601457 to 84601491 34 - TSS region transcription start site region 25005
Tssr25006 2 84601516 to 84601547 31 - TSS region transcription start site region 25006
Tssr25007 2 84635716 to 84635742 26 - TSS region transcription start site region 25007
Tssr25008 2 84637687 to 84637690 3 - TSS region transcription start site region 25008
AI225934 2 84641716 to 84643637 1921 unclassified gene expressed sequence AI225934
Tssr25009 2 84643615 to 84643621 6 - TSS region transcription start site region 25009
Tssr25010 2 84648553 to 84648564 11 - TSS region transcription start site region 25010
Tssr25011 2 84650469 to 84650487 18 - TSS region transcription start site region 25011
Tssr25012 2 84650490 to 84650544 54 - TSS region transcription start site region 25012
Tssr25013 2 84650549 to 84650580 31 - TSS region transcription start site region 25013
Tssr25014 2 84650679 to 84650687 8 - TSS region transcription start site region 25014
Tssr25015 2 84650698 to 84650709 11 - TSS region transcription start site region 25015
Tssr25016 2 84650714 to 84650749 35 - TSS region transcription start site region 25016
Tssr25017 2 84650760 to 84650771 11 - TSS region transcription start site region 25017
Tssr18669 2 84650901 to 84650945 44 + TSS region transcription start site region 18669
Cpgi11859 2 84658845 to 84659419 574 CpG island CpG island 11859
Tssr18670 2 84659065 to 84659082 17 + TSS region transcription start site region 18670
Btbd18 2 84659079 to 84668780 9701 + protein coding gene BTB (POZ) domain containing 18
Selenoh 2 84669215 to 84670708 1493 - protein coding gene selenoprotein H
Tssr18671 2 84670226 to 84670244 18 + TSS region transcription start site region 18671
Cpgi11860 2 84670241 to 84670983 742 CpG island CpG island 11860
Tssr25018 2 84670589 to 84670600 11 - TSS region transcription start site region 25018
Tssr25019 2 84670614 to 84670625 11 - TSS region transcription start site region 25019
Tssr25020 2 84670634 to 84670641 7 - TSS region transcription start site region 25020
Tssr25021 2 84670650 to 84670657 7 - TSS region transcription start site region 25021
Tssr25022 2 84670659 to 84670726 67 - TSS region transcription start site region 25022
Tssr25023 2 84670727 to 84670742 15 - TSS region transcription start site region 25023
Tmx2 2 84671311 to 84678828 7517 - protein coding gene thioredoxin-related transmembrane protein 2
Cpgi11861 2 84677720 to 84678793 1073 CpG island CpG island 11861
Tssr25024 2 84678051 to 84678083 32 - TSS region transcription start site region 25024
Tssr18672 2 84678396 to 84678450 54 + TSS region transcription start site region 18672
Med19 2 84678402 to 84688215 9813 + protein coding gene mediator complex subunit 19
Tssr18673 2 84678455 to 84678458 3 + TSS region transcription start site region 18673
Tssr18674 2 84678474 to 84678477 3 + TSS region transcription start site region 18674
Tssr18675 2 84678565 to 84678620 55 + TSS region transcription start site region 18675
Tssr25025 2 84678837 to 84678850 13 - TSS region transcription start site region 25025
Zdhhc5 2 84687970 to 84715180 27210 - protein coding gene zinc finger, DHHC domain containing 5
Tssr25026 2 84691994 to 84692017 23 - TSS region transcription start site region 25026
n-R5s200 2 84700748 to 84700860 112 - rRNA gene nuclear encoded rRNA 5S 200
Gm27942 2 84703262 to 84703362 100 + snRNA gene predicted gene, 27942
Tssr25027 2 84710868 to 84710883 15 - TSS region transcription start site region 25027
Tssr25028 2 84712022 to 84712023 1 - TSS region transcription start site region 25028
Cpgi11862 2 84714429 to 84716207 1778 CpG island CpG island 11862
Gm32289 2 84714509 to 84717752 3243 + protein coding gene predicted gene, 32289
Tssr25029 2 84715024 to 84715103 79 - TSS region transcription start site region 25029
Tssr25030 2 84715110 to 84715121 11 - TSS region transcription start site region 25030
Tssr25031 2 84715128 to 84715151 23 - TSS region transcription start site region 25031
Tssr25032 2 84715160 to 84715218 58 - TSS region transcription start site region 25032
Tssr25033 2 84715263 to 84715275 12 - TSS region transcription start site region 25033
Tssr25034 2 84715277 to 84715287 10 - TSS region transcription start site region 25034
Tssr25035 2 84715294 to 84715305 11 - TSS region transcription start site region 25035
Tssr25036 2 84715310 to 84715324 14 - TSS region transcription start site region 25036
Clp1 2 84723122 to 84727268 4146 - protein coding gene CLP1, cleavage and polyadenylation factor I subunit
Cpgi11863 2 84727194 to 84727777 583 CpG island CpG island 11863
Tssr25037 2 84727236 to 84727299 63 - TSS region transcription start site region 25037
Tssr25038 2 84727355 to 84727372 17 - TSS region transcription start site region 25038
Tssr18676 2 84727674 to 84727680 6 + TSS region transcription start site region 18676
Tssr18677 2 84734050 to 84734107 57 + TSS region transcription start site region 18677
Ypel4 2 84734058 to 84738655 4597 + protein coding gene yippee like 4
Cpgi11864 2 84736715 to 84736960 245 CpG island CpG island 11864
Tssr18678 2 84738135 to 84738138 3 + TSS region transcription start site region 18678
Mir130a 2 84741115 to 84741178 63 - miRNA gene microRNA 130a
Gm19426 2 84742169 to 84743655 1486 - protein coding gene predicted gene, 19426
Cpgi11865 2 84742752 to 84743969 1217 CpG island CpG island 11865
Tssr18679 2 84742921 to 84742939 18 + TSS region transcription start site region 18679
Tssr18680 2 84742998 to 84743012 14 + TSS region transcription start site region 18680
Tssr25039 2 84743692 to 84743701 9 - TSS region transcription start site region 25039
Tssr25040 2 84743749 to 84743764 15 - TSS region transcription start site region 25040
Tssr25041 2 84743767 to 84743783 16 - TSS region transcription start site region 25041
Tssr18681 2 84743880 to 84743909 29 + TSS region transcription start site region 18681
Serping1 2 84765387 to 84775444 10057 - protein coding gene serine (or cysteine) peptidase inhibitor, clade G, member 1
Tssr25042 2 84773241 to 84773252 11 - TSS region transcription start site region 25042
Tssr25043 2 84773257 to 84773267 10 - TSS region transcription start site region 25043
Tssr18682 2 84773305 to 84773332 27 + TSS region transcription start site region 18682
Tssr25044 2 84773338 to 84773371 33 - TSS region transcription start site region 25044
Tssr25045 2 84773372 to 84773405 33 - TSS region transcription start site region 25045
Tssr25046 2 84773428 to 84773464 36 - TSS region transcription start site region 25046
Tssr18683 2 84773430 to 84773479 49 + TSS region transcription start site region 18683
Tssr25047 2 84773514 to 84773553 39 - TSS region transcription start site region 25047
Tssr25048 2 84773637 to 84773649 12 - TSS region transcription start site region 25048
Cpgi11866 2 84774792 to 84775039 247 CpG island CpG island 11866
Tssr25049 2 84774796 to 84774807 11 - TSS region transcription start site region 25049
Tssr25050 2 84774809 to 84774860 51 - TSS region transcription start site region 25050
Tssr25051 2 84774863 to 84774876 13 - TSS region transcription start site region 25051
Tssr25052 2 84775388 to 84775411 23 - TSS region transcription start site region 25052
Tssr25053 2 84775420 to 84775438 18 - TSS region transcription start site region 25053
Gm36596 2 84778859 to 84791354 12495 - lncRNA gene predicted gene, 36596
Tssr18684 2 84794272 to 84794273 1 + TSS region transcription start site region 18684
Tssr18685 2 84798280 to 84798295 15 + TSS region transcription start site region 18685
Tssr18686 2 84798401 to 84798417 16 + TSS region transcription start site region 18686
Cpgi11867 2 84798487 to 84799016 529 CpG island CpG island 11867
Tssr18687 2 84798552 to 84798588 36 + TSS region transcription start site region 18687
Tssr18688 2 84798797 to 84798805 8 + TSS region transcription start site region 18688
Ube2l6 2 84798828 to 84810003 11175 + protein coding gene ubiquitin-conjugating enzyme E2L 6
Tssr18689 2 84798841 to 84798861 20 + TSS region transcription start site region 18689
Tssr18690 2 84798873 to 84798888 15 + TSS region transcription start site region 18690
Tssr25054 2 84799277 to 84799291 14 - TSS region transcription start site region 25054
Tssr18691 2 84799420 to 84799443 23 + TSS region transcription start site region 18691
Tssr18692 2 84799444 to 84799469 25 + TSS region transcription start site region 18692
Tssr25055 2 84800442 to 84800457 15 - TSS region transcription start site region 25055
Tssr18693 2 84809212 to 84809235 23 + TSS region transcription start site region 18693
Tssr18694 2 84809306 to 84809323 17 + TSS region transcription start site region 18694
Tssr18695 2 84809344 to 84809356 12 + TSS region transcription start site region 18695
Tssr18696 2 84809395 to 84809401 6 + TSS region transcription start site region 18696
Tssr18697 2 84809499 to 84809523 24 + TSS region transcription start site region 18697
Tssr18698 2 84809679 to 84809711 32 + TSS region transcription start site region 18698
Smtnl1 2 84811176 to 84822652 11476 - protein coding gene smoothelin-like 1
Plast2b 2 148680255 to 84182854 -64497401 QTL plasma plant sterol 2b
Hylaq1 2 148825550 to 84182854 -64642696 QTL Hyperlocomotor activity related QTL 1