Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:83062846-84562855

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capsq1 2 27712048 to 84183040 56470992 QTL capsaicin sensitivity related QTL 1
Gm28675 2 83100258 to 83126216 25958 - lincRNA gene predicted gene 28675
Tssr18639 2 83293199 to 83293200 1 + TSS region transcription start site region 18639
Gm13680 2 83353157 to 83353949 792 - pseudogene predicted gene 13680
Tssr24952 2 83353969 to 83353976 7 - TSS region transcription start site region 24952
Gm13679 2 83390129 to 83390612 483 + pseudogene predicted gene 13679
Gm13682 2 83394180 to 83394881 701 + pseudogene predicted gene 13682
Gm13681 2 83428702 to 83428911 209 + pseudogene predicted gene 13681
Gm13683 2 83451864 to 83458559 6695 + pseudogene predicted gene 13683
D2Mit419 2 83487518 to 83487635 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 419
Gm13685 2 83538535 to 83538675 140 - pseudogene predicted gene 13685
D2Mit461 2 83624920 to 83625066 146 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-461
Cpgi11854 2 83644112 to 83645269 1157 CpG island CpG island 11854
Tssr18640 2 83644477 to 83644490 13 + TSS region transcription start site region 18640
Tssr18641 2 83644501 to 83644521 20 + TSS region transcription start site region 18641
Tssr18642 2 83644524 to 83644547 23 + TSS region transcription start site region 18642
Tssr18643 2 83644564 to 83644577 13 + TSS region transcription start site region 18643
Zc3h15 2 83644578 to 83664617 20039 + protein coding gene zinc finger CCCH-type containing 15
Tssr18644 2 83644581 to 83644592 11 + TSS region transcription start site region 18644
Tssr18645 2 83659550 to 83659551 1 + TSS region transcription start site region 18645
Gm13686 2 83700657 to 83701116 459 - antisense lncRNA gene predicted gene 13686
Tssr18646 2 83706047 to 83706071 24 + TSS region transcription start site region 18646
Tssr18647 2 83721109 to 83721123 14 + TSS region transcription start site region 18647
Tssr24953 2 83722988 to 83722990 2 - TSS region transcription start site region 24953
Cpgi11855 2 83724056 to 83725160 1104 CpG island CpG island 11855
Tssr18648 2 83724076 to 83724106 30 + TSS region transcription start site region 18648
Tssr18649 2 83724158 to 83724169 11 + TSS region transcription start site region 18649
Tssr24954 2 83724329 to 83724372 43 - TSS region transcription start site region 24954
Itgav 2 83724397 to 83806916 82519 + protein coding gene integrin alpha V
Tssr18650 2 83724412 to 83724419 7 + TSS region transcription start site region 18650
Tssr18651 2 83724429 to 83724515 86 + TSS region transcription start site region 18651
Tssr550 2 83724524 to 83724528 4 + TSS region transcription start site region 550
Tssr24955 2 83725419 to 83725456 37 - TSS region transcription start site region 24955
Gm13684 2 83737782 to 83759865 22083 - unclassified non-coding RNA gene predicted gene 13684
Dnmt3l-ps1 2 83744333 to 83745434 1101 - pseudogene DNA methyltransferase 3-like, pseudogene 1
Tssr18652 2 83761733 to 83761747 14 + TSS region transcription start site region 18652
Tssr18653 2 83762583 to 83762587 4 + TSS region transcription start site region 18653
Tssr18654 2 83765496 to 83765499 3 + TSS region transcription start site region 18654
Tssr18655 2 83771709 to 83771713 4 + TSS region transcription start site region 18655
Tssr18656 2 83775343 to 83775373 30 + TSS region transcription start site region 18656
Tssr18657 2 83805138 to 83805169 31 + TSS region transcription start site region 18657
Tssr18658 2 83806582 to 83806601 19 + TSS region transcription start site region 18658
Cpgi11856 2 83812300 to 83813145 845 CpG island CpG island 11856
Tssr18659 2 83812567 to 83812643 76 + TSS region transcription start site region 18659
Fam171b 2 83812636 to 83883486 70850 + protein coding gene family with sequence similarity 171, member B
Tssr18660 2 83812648 to 83812701 53 + TSS region transcription start site region 18660
Tssr18661 2 83812739 to 83812751 12 + TSS region transcription start site region 18661
Tssr18662 2 83812785 to 83812796 11 + TSS region transcription start site region 18662
Tssr551 2 83812846 to 83812855 9 + TSS region transcription start site region 551
Tssr18663 2 83848753 to 83848765 12 + TSS region transcription start site region 18663
Tssr18664 2 83851069 to 83851072 3 + TSS region transcription start site region 18664
Tssr18665 2 83879108 to 83879114 6 + TSS region transcription start site region 18665
Zswim2 2 83915079 to 83941228 26149 - protein coding gene zinc finger SWIM-type containing 2
Tssr24956 2 83917362 to 83917378 16 - TSS region transcription start site region 24956
Cpgi11857 2 83941022 to 83941302 280 CpG island CpG island 11857
Tssr24957 2 83941201 to 83941213 12 - TSS region transcription start site region 24957
Tssr24958 2 83941220 to 83941230 10 - TSS region transcription start site region 24958
Gm13698 2 83955693 to 83958185 2492 + protein coding gene predicted gene 13698
Gm13693 2 83961503 to 83963995 2492 + protein coding gene predicted gene 13693
Gm13695 2 83967313 to 83969805 2492 + protein coding gene predicted gene 13695
Gm13696 2 83973123 to 83975615 2492 + protein coding gene predicted gene 13696
Gm13694 2 83978933 to 83981425 2492 + protein coding gene predicted gene 13694
Gm13697 2 83984743 to 83987235 2492 + protein coding gene predicted gene 13697
Gm13691 2 83990553 to 83993045 2492 + protein coding gene predicted gene 13691
Tssr552 2 84018732 to 84018751 19 + TSS region transcription start site region 552
Gm13692 2 84034243 to 84034613 370 - pseudogene predicted gene 13692
D2Mit382 2 84052416 to 84052539 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 382
Gm13702 2 84144890 to 84145714 824 + pseudogene predicted gene 13702
Gm25972 2 84150055 to 84150155 100 + miRNA gene predicted gene, 25972
D2Mit126 2 84182854 to 84183040 186 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 126
Gm13711 2 84317339 to 84318311 972 - pseudogene predicted gene 13711
Calcrl 2 84330626 to 84425411 94785 - protein coding gene calcitonin receptor-like
Tssr24959 2 84331508 to 84331519 11 - TSS region transcription start site region 24959
Tssr24960 2 84332087 to 84332104 17 - TSS region transcription start site region 24960
Tssr24961 2 84333544 to 84333558 14 - TSS region transcription start site region 24961
Tssr24962 2 84342545 to 84342557 12 - TSS region transcription start site region 24962
Tssr24963 2 84342601 to 84342614 13 - TSS region transcription start site region 24963
Tssr24964 2 84342793 to 84342804 11 - TSS region transcription start site region 24964
Tssr24965 2 84343893 to 84343906 13 - TSS region transcription start site region 24965
Tssr24966 2 84345223 to 84345230 7 - TSS region transcription start site region 24966
Tssr24967 2 84345673 to 84345677 4 - TSS region transcription start site region 24967
Tssr24968 2 84356396 to 84356412 16 - TSS region transcription start site region 24968
Tssr24969 2 84359707 to 84359714 7 - TSS region transcription start site region 24969
Tssr24970 2 84361992 to 84361996 4 - TSS region transcription start site region 24970
Tssr553 2 84383979 to 84383982 3 - TSS region transcription start site region 553
Tssr24971 2 84387189 to 84387192 3 - TSS region transcription start site region 24971
Tssr24972 2 84389698 to 84389707 9 - TSS region transcription start site region 24972
Tssr24973 2 84389755 to 84389765 10 - TSS region transcription start site region 24973
Tssr24974 2 84389796 to 84389813 17 - TSS region transcription start site region 24974
Tssr24975 2 84390796 to 84390809 13 - TSS region transcription start site region 24975
Tssr24976 2 84393352 to 84393354 2 - TSS region transcription start site region 24976
Tssr24977 2 84405370 to 84405396 26 - TSS region transcription start site region 24977
Tssr24978 2 84407577 to 84407588 11 - TSS region transcription start site region 24978
Tssr24979 2 84407787 to 84407790 3 - TSS region transcription start site region 24979
Tssr24980 2 84412640 to 84412687 47 - TSS region transcription start site region 24980
Tssr24981 2 84414179 to 84414183 4 - TSS region transcription start site region 24981
Tssr24982 2 84416622 to 84416633 11 - TSS region transcription start site region 24982
Tssr24983 2 84421389 to 84421402 13 - TSS region transcription start site region 24983
Tssr24984 2 84422498 to 84422518 20 - TSS region transcription start site region 24984
Tssr24985 2 84424423 to 84424432 9 - TSS region transcription start site region 24985
Tssr24986 2 84425258 to 84425273 15 - TSS region transcription start site region 24986
Tfpi 2 84432855 to 84476775 43920 - protein coding gene tissue factor pathway inhibitor
Tssr24987 2 84433098 to 84433109 11 - TSS region transcription start site region 24987
Tssr24988 2 84434288 to 84434300 12 - TSS region transcription start site region 24988
Tssr24989 2 84442669 to 84442681 12 - TSS region transcription start site region 24989
Tssr24990 2 84442782 to 84442793 11 - TSS region transcription start site region 24990
Tssr24991 2 84443156 to 84443177 21 - TSS region transcription start site region 24991
Tssr24992 2 84469501 to 84469504 3 - TSS region transcription start site region 24992
Tssr24993 2 84473994 to 84474008 14 - TSS region transcription start site region 24993
Tssr24994 2 84474590 to 84474600 10 - TSS region transcription start site region 24994
Tssr24995 2 84476725 to 84476788 63 - TSS region transcription start site region 24995
Cpgi11858 2 84484925 to 84485245 320 CpG island CpG island 11858
Tssr24996 2 84499524 to 84499570 46 - TSS region transcription start site region 24996
Gm13710 2 84500748 to 84506873 6125 - lincRNA gene predicted gene 13710
Tssr24997 2 84501301 to 84501332 31 - TSS region transcription start site region 24997
Tssr24998 2 84501404 to 84501417 13 - TSS region transcription start site region 24998
Tssr24999 2 84513645 to 84513662 17 - TSS region transcription start site region 24999
Tssr25000 2 84513687 to 84513695 8 - TSS region transcription start site region 25000
Tssr18666 2 84515551 to 84515590 39 + TSS region transcription start site region 18666
Tssr18667 2 84525471 to 84525475 4 + TSS region transcription start site region 18667
Tssr25001 2 84531316 to 84531331 15 - TSS region transcription start site region 25001
Tssr25002 2 84531346 to 84531357 11 - TSS region transcription start site region 25002
Tssr25003 2 84531360 to 84531389 29 - TSS region transcription start site region 25003
Tssr25004 2 84531426 to 84531437 11 - TSS region transcription start site region 25004
Tssr18668 2 84549933 to 84549945 12 + TSS region transcription start site region 18668
Plast2b 2 148680255 to 84182854 -64497401 QTL plasma plant sterol 2b
Hylaq1 2 148825550 to 84182854 -64642696 QTL Hyperlocomotor activity related QTL 1