Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:81968634-83983937

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11852 2 82052782 to 82053881 1099 CpG island CpG island 11852
Tssr548 2 82053062 to 82053091 29 + TSS region transcription start site region 548
Zfp804a 2 82053222 to 82259879 206657 + protein coding gene zinc finger protein 804A
Tssr18633 2 82053290 to 82053311 21 + TSS region transcription start site region 18633
Tssr18634 2 82053378 to 82053391 13 + TSS region transcription start site region 18634
Tssr18635 2 82063885 to 82063888 3 + TSS region transcription start site region 18635
Gm13677 2 82122517 to 82123111 594 - pseudogene predicted gene 13677
D2Mit220 2 82186004 to 82186088 84 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 220
A130030D18Rik 2 82375372 to 82392202 16830 - lincRNA gene RIKEN cDNA A130030D18 gene
D2Mit331 2 82401883 to 82402136 253 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 331
Gm6497 2 82429079 to 82431419 2340 unclassified gene predicted gene 6497
Tssr18636 2 82507112 to 82507127 15 + TSS region transcription start site region 18636
Gm13675 2 82507216 to 82507744 528 + pseudogene predicted gene 13675
Tssr18637 2 82507649 to 82507666 17 + TSS region transcription start site region 18637
Gm13676 2 82543938 to 82544522 584 - pseudogene predicted gene 13676
Gm13678 2 82623213 to 82623552 339 + pseudogene predicted gene 13678
D2Ucl24 2 82818318 to 82818521 203 DNA segment DNA segment, Chr 2, University College London 24
D2Mit475 2 82821917 to 82822041 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 475
Cpgi11853 2 82943511 to 82943663 152 CpG island CpG island 11853
Tssr18638 2 82943627 to 82943640 13 + TSS region transcription start site region 18638
Fsip2 2 82943634 to 83008937 65303 + protein coding gene fibrous sheath-interacting protein 2
Tssr549 2 82991665 to 82991668 3 + TSS region transcription start site region 549
Gm28675 2 83100258 to 83126216 25958 - lincRNA gene predicted gene 28675
Tssr18639 2 83293199 to 83293200 1 + TSS region transcription start site region 18639
Gm13680 2 83353157 to 83353949 792 - pseudogene predicted gene 13680
Tssr24952 2 83353969 to 83353976 7 - TSS region transcription start site region 24952
Gm13679 2 83390129 to 83390612 483 + pseudogene predicted gene 13679
Gm13682 2 83394180 to 83394881 701 + pseudogene predicted gene 13682
Gm13681 2 83428702 to 83428911 209 + pseudogene predicted gene 13681
Gm13683 2 83451864 to 83458559 6695 + pseudogene predicted gene 13683
D2Mit419 2 83487518 to 83487635 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 419
Gm13685 2 83538535 to 83538675 140 - pseudogene predicted gene 13685
D2Mit461 2 83624920 to 83625066 146 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-461
Cpgi11854 2 83644112 to 83645269 1157 CpG island CpG island 11854
Tssr18640 2 83644477 to 83644490 13 + TSS region transcription start site region 18640
Tssr18641 2 83644501 to 83644521 20 + TSS region transcription start site region 18641
Tssr18642 2 83644524 to 83644547 23 + TSS region transcription start site region 18642
Tssr18643 2 83644564 to 83644577 13 + TSS region transcription start site region 18643
Zc3h15 2 83644578 to 83664617 20039 + protein coding gene zinc finger CCCH-type containing 15
Tssr18644 2 83644581 to 83644592 11 + TSS region transcription start site region 18644
Tssr18645 2 83659550 to 83659551 1 + TSS region transcription start site region 18645
Gm13686 2 83700657 to 83701116 459 - antisense lncRNA gene predicted gene 13686
Tssr18646 2 83706047 to 83706071 24 + TSS region transcription start site region 18646
Tssr18647 2 83721109 to 83721123 14 + TSS region transcription start site region 18647
Tssr24953 2 83722988 to 83722990 2 - TSS region transcription start site region 24953
Cpgi11855 2 83724056 to 83725160 1104 CpG island CpG island 11855
Tssr18648 2 83724076 to 83724106 30 + TSS region transcription start site region 18648
Tssr18649 2 83724158 to 83724169 11 + TSS region transcription start site region 18649
Tssr24954 2 83724329 to 83724372 43 - TSS region transcription start site region 24954
Itgav 2 83724397 to 83806916 82519 + protein coding gene integrin alpha V
Tssr18650 2 83724412 to 83724419 7 + TSS region transcription start site region 18650
Tssr18651 2 83724429 to 83724515 86 + TSS region transcription start site region 18651
Tssr550 2 83724524 to 83724528 4 + TSS region transcription start site region 550
Tssr24955 2 83725419 to 83725456 37 - TSS region transcription start site region 24955
Gm13684 2 83737782 to 83759865 22083 - unclassified non-coding RNA gene predicted gene 13684
Dnmt3l-ps1 2 83744333 to 83745434 1101 - pseudogene DNA methyltransferase 3-like, pseudogene 1
Tssr18652 2 83761733 to 83761747 14 + TSS region transcription start site region 18652
Tssr18653 2 83762583 to 83762587 4 + TSS region transcription start site region 18653
Tssr18654 2 83765496 to 83765499 3 + TSS region transcription start site region 18654
Tssr18655 2 83771709 to 83771713 4 + TSS region transcription start site region 18655
Tssr18656 2 83775343 to 83775373 30 + TSS region transcription start site region 18656
Tssr18657 2 83805138 to 83805169 31 + TSS region transcription start site region 18657
Tssr18658 2 83806582 to 83806601 19 + TSS region transcription start site region 18658
Cpgi11856 2 83812300 to 83813145 845 CpG island CpG island 11856
Tssr18659 2 83812567 to 83812643 76 + TSS region transcription start site region 18659
Fam171b 2 83812636 to 83883486 70850 + protein coding gene family with sequence similarity 171, member B
Tssr18660 2 83812648 to 83812701 53 + TSS region transcription start site region 18660
Tssr18661 2 83812739 to 83812751 12 + TSS region transcription start site region 18661
Tssr18662 2 83812785 to 83812796 11 + TSS region transcription start site region 18662
Tssr551 2 83812846 to 83812855 9 + TSS region transcription start site region 551
Tssr18663 2 83848753 to 83848765 12 + TSS region transcription start site region 18663
Tssr18664 2 83851069 to 83851072 3 + TSS region transcription start site region 18664
Tssr18665 2 83879108 to 83879114 6 + TSS region transcription start site region 18665
Zswim2 2 83915079 to 83941228 26149 - protein coding gene zinc finger SWIM-type containing 2
Tssr24956 2 83917362 to 83917378 16 - TSS region transcription start site region 24956
Cpgi11857 2 83941022 to 83941302 280 CpG island CpG island 11857
Tssr24957 2 83941201 to 83941213 12 - TSS region transcription start site region 24957
Tssr24958 2 83941220 to 83941230 10 - TSS region transcription start site region 24958
Gm13698 2 83955693 to 83958185 2492 + protein coding gene predicted gene 13698
Gm13693 2 83961503 to 83963995 2492 + protein coding gene predicted gene 13693
Gm13695 2 83967313 to 83969805 2492 + protein coding gene predicted gene 13695
Gm13696 2 83973123 to 83975615 2492 + protein coding gene predicted gene 13696
Gm13694 2 83978933 to 83981425 2492 + protein coding gene predicted gene 13694