Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:79694013-80564023

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436
Tssr24917 2 80128940 to 80128996 56 - TSS region transcription start site region 24917
Cpgi11847 2 80128958 to 80129248 290 CpG island CpG island 11847
Tssr24918 2 80129013 to 80129023 10 - TSS region transcription start site region 24918
Tssr24919 2 80129117 to 80129138 21 - TSS region transcription start site region 24919
Tssr24920 2 80129160 to 80129173 13 - TSS region transcription start site region 24920
Tssr24921 2 80129183 to 80129192 9 - TSS region transcription start site region 24921
Tssr24922 2 80129217 to 80129243 26 - TSS region transcription start site region 24922
Tssr24923 2 80129244 to 80129278 34 - TSS region transcription start site region 24923
Tssr24924 2 80129290 to 80129304 14 - TSS region transcription start site region 24924
Tssr24925 2 80129535 to 80129549 14 - TSS region transcription start site region 24925
Gm13674 2 80131930 to 80132752 822 + pseudogene predicted gene 13674
Tssr18597 2 80159134 to 80159136 2 + TSS region transcription start site region 18597
Bomd3 2 80175610 to 80175769 159 QTL bone mineral density 3
D2Mit94 2 80175610 to 80175769 159 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 94
Actre2 2 80175610 to 80175769 159 QTL activity response to ethanol 2
Etohila 2 80175610 to 80175769 159 QTL ethanol induced locomotor activity
Etohr 2 80175610 to 80175769 159 QTL ethanol response acute
Hdl7 2 80175610 to 80175769 159 QTL high density lipoprotein (HDL) level 7
Lith24 2 80175610 to 80175769 159 QTL lithogenic gene 24
D2Mit1009 2 80205982 to 80206130 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1009
Tssr24926 2 80257792 to 80257797 5 - TSS region transcription start site region 24926
Gm36153 2 80283457 to 80292288 8831 - lncRNA gene predicted gene, 36153
Tssr24927 2 80292401 to 80292411 10 - TSS region transcription start site region 24927
Tssr18598 2 80292468 to 80292509 41 + TSS region transcription start site region 18598
Prdx6b 2 80292472 to 80295356 2884 + protein coding gene peroxiredoxin 6B
Tssr18599 2 80292793 to 80292803 10 + TSS region transcription start site region 18599
Tssr18600 2 80292815 to 80292839 24 + TSS region transcription start site region 18600
Tssr24928 2 80300960 to 80300967 7 - TSS region transcription start site region 24928
Tssr18601 2 80302255 to 80302258 3 + TSS region transcription start site region 18601
Tssr18602 2 80302311 to 80302318 7 + TSS region transcription start site region 18602
Tssr18603 2 80302328 to 80302331 3 + TSS region transcription start site region 18603
Tssr18604 2 80302344 to 80302355 11 + TSS region transcription start site region 18604
Tssr18605 2 80302359 to 80302364 5 + TSS region transcription start site region 18605
Tssr24929 2 80304611 to 80304626 15 - TSS region transcription start site region 24929
Gm18693 2 80305857 to 80306609 752 - pseudogene predicted gene, 18693
Cpgi11848 2 80315382 to 80316166 784 CpG island CpG island 11848
Tssr18606 2 80315461 to 80315511 50 + TSS region transcription start site region 18606
Dnajc10 2 80315466 to 80354043 38577 + protein coding gene DnaJ heat shock protein family (Hsp40) member C10
Tssr18607 2 80315516 to 80315528 12 + TSS region transcription start site region 18607
Tssr18608 2 80315535 to 80315546 11 + TSS region transcription start site region 18608
Tssr18609 2 80315669 to 80315678 9 + TSS region transcription start site region 18609
Tssr18610 2 80315703 to 80315744 41 + TSS region transcription start site region 18610
Tssr18611 2 80316756 to 80316768 12 + TSS region transcription start site region 18611
Tssr18612 2 80316827 to 80316841 14 + TSS region transcription start site region 18612
Tssr18613 2 80316843 to 80316873 30 + TSS region transcription start site region 18613
Tssr18614 2 80316879 to 80316880 1 + TSS region transcription start site region 18614
Tssr546 2 80316966 to 80316983 17 + TSS region transcription start site region 546
Tssr18615 2 80316988 to 80316994 6 + TSS region transcription start site region 18615
Tssr18616 2 80317004 to 80317024 20 + TSS region transcription start site region 18616
Tssr18617 2 80317354 to 80317363 9 + TSS region transcription start site region 18617
Tssr18618 2 80318016 to 80318024 8 + TSS region transcription start site region 18618
Tssr18619 2 80318030 to 80318041 11 + TSS region transcription start site region 18619
Tssr18620 2 80324384 to 80324388 4 + TSS region transcription start site region 18620
Gm13752 2 80394897 to 80400525 5628 + antisense lncRNA gene predicted gene 13752
Frzb 2 80411970 to 80447396 35426 - protein coding gene frizzled-related protein
Tssr24930 2 80438641 to 80438644 3 - TSS region transcription start site region 24930
Cpgi11849 2 80446101 to 80447838 1737 CpG island CpG island 11849
Tssr24931 2 80447058 to 80447072 14 - TSS region transcription start site region 24931
Tssr24932 2 80447087 to 80447090 3 - TSS region transcription start site region 24932
Tssr24933 2 80447238 to 80447245 7 - TSS region transcription start site region 24933
Tssr24934 2 80447247 to 80447266 19 - TSS region transcription start site region 24934
Tssr24935 2 80447359 to 80447376 17 - TSS region transcription start site region 24935
Tssr24936 2 80447386 to 80447406 20 - TSS region transcription start site region 24936
Tssr24937 2 80447407 to 80447425 18 - TSS region transcription start site region 24937
Gm13687 2 80499230 to 80499511 281 + pseudogene predicted gene 13687
Tssr24938 2 80499813 to 80499817 4 - TSS region transcription start site region 24938
Nckap1 2 80500512 to 80581299 80787 - protein coding gene NCK-associated protein 1
Tssr24939 2 80524672 to 80524684 12 - TSS region transcription start site region 24939
Tssr24940 2 80524692 to 80524697 5 - TSS region transcription start site region 24940
Tssr24941 2 80524702 to 80524711 9 - TSS region transcription start site region 24941
Tssr24942 2 80524721 to 80524738 17 - TSS region transcription start site region 24942
Gm13689 2 80549740 to 80550392 652 - pseudogene predicted gene 13689
Gm24461 2 80558685 to 80558787 102 + snRNA gene predicted gene, 24461
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220