Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:79543389-80273403

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39867 2 79549771 to 79552400 2629 + lncRNA gene predicted gene, 39867
Tssr18580 2 79587751 to 79587771 20 + TSS region transcription start site region 18580
Tssr18581 2 79587792 to 79587799 7 + TSS region transcription start site region 18581
Tssr18582 2 79606295 to 79606302 7 + TSS region transcription start site region 18582
Tssr18583 2 79621605 to 79621635 30 + TSS region transcription start site region 18583
Gm46751 2 79629719 to 79635158 5439 - lncRNA gene predicted gene, 46751
Cpgi11845 2 79634923 to 79636267 1344 CpG island CpG island 11845
Tssr18584 2 79635270 to 79635290 20 + TSS region transcription start site region 18584
Tssr18585 2 79635300 to 79635320 20 + TSS region transcription start site region 18585
Itprid2 2 79635352 to 79672966 37614 + protein coding gene ITPR interacting domain containing 2
Tssr18586 2 79635370 to 79635410 40 + TSS region transcription start site region 18586
Tssr18587 2 79635416 to 79635441 25 + TSS region transcription start site region 18587
Tssr18588 2 79635444 to 79635463 19 + TSS region transcription start site region 18588
Tssr18589 2 79635599 to 79635650 51 + TSS region transcription start site region 18589
Tssr18590 2 79635654 to 79635671 17 + TSS region transcription start site region 18590
Tssr18591 2 79639194 to 79639207 13 + TSS region transcription start site region 18591
Tssr18592 2 79644526 to 79644551 25 + TSS region transcription start site region 18592
Tssr18593 2 79652001 to 79652024 23 + TSS region transcription start site region 18593
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436
Tssr24917 2 80128940 to 80128996 56 - TSS region transcription start site region 24917
Cpgi11847 2 80128958 to 80129248 290 CpG island CpG island 11847
Tssr24918 2 80129013 to 80129023 10 - TSS region transcription start site region 24918
Tssr24919 2 80129117 to 80129138 21 - TSS region transcription start site region 24919
Tssr24920 2 80129160 to 80129173 13 - TSS region transcription start site region 24920
Tssr24921 2 80129183 to 80129192 9 - TSS region transcription start site region 24921
Tssr24922 2 80129217 to 80129243 26 - TSS region transcription start site region 24922
Tssr24923 2 80129244 to 80129278 34 - TSS region transcription start site region 24923
Tssr24924 2 80129290 to 80129304 14 - TSS region transcription start site region 24924
Tssr24925 2 80129535 to 80129549 14 - TSS region transcription start site region 24925
Gm13674 2 80131930 to 80132752 822 + pseudogene predicted gene 13674
Tssr18597 2 80159134 to 80159136 2 + TSS region transcription start site region 18597
Lith24 2 80175610 to 80175769 159 QTL lithogenic gene 24
Etohr 2 80175610 to 80175769 159 QTL ethanol response acute
Etohila 2 80175610 to 80175769 159 QTL ethanol induced locomotor activity
D2Mit94 2 80175610 to 80175769 159 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 94
Bomd3 2 80175610 to 80175769 159 QTL bone mineral density 3
Actre2 2 80175610 to 80175769 159 QTL activity response to ethanol 2
Hdl7 2 80175610 to 80175769 159 QTL high density lipoprotein (HDL) level 7
D2Mit1009 2 80205982 to 80206130 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1009
Tssr24926 2 80257792 to 80257797 5 - TSS region transcription start site region 24926
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220