Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:79453428-80363438

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neurod1 2 79452641 to 79456636 3995 - protein coding gene neurogenic differentiation 1
Cpgi11842 2 79453894 to 79454895 1001 CpG island CpG island 11842
Tssr24893 2 79453916 to 79453960 44 - TSS region transcription start site region 24893
Gm26755 2 79453985 to 79461107 7122 + lincRNA gene predicted gene, 26755
Tssr24894 2 79454253 to 79454275 22 - TSS region transcription start site region 24894
Tssr24895 2 79454307 to 79454316 9 - TSS region transcription start site region 24895
Tssr24896 2 79454385 to 79454392 7 - TSS region transcription start site region 24896
Tssr24897 2 79454649 to 79454674 25 - TSS region transcription start site region 24897
Tssr24898 2 79454699 to 79454710 11 - TSS region transcription start site region 24898
Tssr24899 2 79454950 to 79454962 12 - TSS region transcription start site region 24899
Tssr24900 2 79454965 to 79454972 7 - TSS region transcription start site region 24900
Tssr24901 2 79454986 to 79454992 6 - TSS region transcription start site region 24901
Tssr24902 2 79455021 to 79455031 10 - TSS region transcription start site region 24902
Tssr24903 2 79455072 to 79455089 17 - TSS region transcription start site region 24903
Tssr24904 2 79456301 to 79456304 3 - TSS region transcription start site region 24904
Cpgi11843 2 79456555 to 79457021 466 CpG island CpG island 11843
Tssr24905 2 79456626 to 79456644 18 - TSS region transcription start site region 24905
Tssr24906 2 79456750 to 79456761 11 - TSS region transcription start site region 24906
Cpgi11844 2 79458830 to 79459435 605 CpG island CpG island 11844
Gm39867 2 79549771 to 79552400 2629 + lncRNA gene predicted gene, 39867
Tssr18580 2 79587751 to 79587771 20 + TSS region transcription start site region 18580
Tssr18581 2 79587792 to 79587799 7 + TSS region transcription start site region 18581
Tssr18582 2 79606295 to 79606302 7 + TSS region transcription start site region 18582
Tssr18583 2 79621605 to 79621635 30 + TSS region transcription start site region 18583
Gm46751 2 79629719 to 79635158 5439 - lncRNA gene predicted gene, 46751
Cpgi11845 2 79634923 to 79636267 1344 CpG island CpG island 11845
Tssr18584 2 79635270 to 79635290 20 + TSS region transcription start site region 18584
Tssr18585 2 79635300 to 79635320 20 + TSS region transcription start site region 18585
Itprid2 2 79635352 to 79672966 37614 + protein coding gene ITPR interacting domain containing 2
Tssr18586 2 79635370 to 79635410 40 + TSS region transcription start site region 18586
Tssr18587 2 79635416 to 79635441 25 + TSS region transcription start site region 18587
Tssr18588 2 79635444 to 79635463 19 + TSS region transcription start site region 18588
Tssr18589 2 79635599 to 79635650 51 + TSS region transcription start site region 18589
Tssr18590 2 79635654 to 79635671 17 + TSS region transcription start site region 18590
Tssr18591 2 79639194 to 79639207 13 + TSS region transcription start site region 18591
Tssr18592 2 79644526 to 79644551 25 + TSS region transcription start site region 18592
Tssr18593 2 79652001 to 79652024 23 + TSS region transcription start site region 18593
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436
Tssr24917 2 80128940 to 80128996 56 - TSS region transcription start site region 24917
Cpgi11847 2 80128958 to 80129248 290 CpG island CpG island 11847
Tssr24918 2 80129013 to 80129023 10 - TSS region transcription start site region 24918
Tssr24919 2 80129117 to 80129138 21 - TSS region transcription start site region 24919
Tssr24920 2 80129160 to 80129173 13 - TSS region transcription start site region 24920
Tssr24921 2 80129183 to 80129192 9 - TSS region transcription start site region 24921
Tssr24922 2 80129217 to 80129243 26 - TSS region transcription start site region 24922
Tssr24923 2 80129244 to 80129278 34 - TSS region transcription start site region 24923
Tssr24924 2 80129290 to 80129304 14 - TSS region transcription start site region 24924
Tssr24925 2 80129535 to 80129549 14 - TSS region transcription start site region 24925
Gm13674 2 80131930 to 80132752 822 + pseudogene predicted gene 13674
Tssr18597 2 80159134 to 80159136 2 + TSS region transcription start site region 18597
Hdl7 2 80175610 to 80175769 159 QTL high density lipoprotein (HDL) level 7
D2Mit94 2 80175610 to 80175769 159 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 94
Lith24 2 80175610 to 80175769 159 QTL lithogenic gene 24
Etohila 2 80175610 to 80175769 159 QTL ethanol induced locomotor activity
Bomd3 2 80175610 to 80175769 159 QTL bone mineral density 3
Actre2 2 80175610 to 80175769 159 QTL activity response to ethanol 2
Etohr 2 80175610 to 80175769 159 QTL ethanol response acute
D2Mit1009 2 80205982 to 80206130 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1009
Tssr24926 2 80257792 to 80257797 5 - TSS region transcription start site region 24926
Gm36153 2 80283457 to 80292288 8831 - lncRNA gene predicted gene, 36153
Tssr24927 2 80292401 to 80292411 10 - TSS region transcription start site region 24927
Tssr18598 2 80292468 to 80292509 41 + TSS region transcription start site region 18598
Prdx6b 2 80292472 to 80295356 2884 + protein coding gene peroxiredoxin 6B
Tssr18599 2 80292793 to 80292803 10 + TSS region transcription start site region 18599
Tssr18600 2 80292815 to 80292839 24 + TSS region transcription start site region 18600
Tssr24928 2 80300960 to 80300967 7 - TSS region transcription start site region 24928
Tssr18601 2 80302255 to 80302258 3 + TSS region transcription start site region 18601
Tssr18602 2 80302311 to 80302318 7 + TSS region transcription start site region 18602
Tssr18603 2 80302328 to 80302331 3 + TSS region transcription start site region 18603
Tssr18604 2 80302344 to 80302355 11 + TSS region transcription start site region 18604
Tssr18605 2 80302359 to 80302364 5 + TSS region transcription start site region 18605
Tssr24929 2 80304611 to 80304626 15 - TSS region transcription start site region 24929
Gm18693 2 80305857 to 80306609 752 - pseudogene predicted gene, 18693
Cpgi11848 2 80315382 to 80316166 784 CpG island CpG island 11848
Tssr18606 2 80315461 to 80315511 50 + TSS region transcription start site region 18606
Dnajc10 2 80315466 to 80354043 38577 + protein coding gene DnaJ heat shock protein family (Hsp40) member C10
Tssr18607 2 80315516 to 80315528 12 + TSS region transcription start site region 18607
Tssr18608 2 80315535 to 80315546 11 + TSS region transcription start site region 18608
Tssr18609 2 80315669 to 80315678 9 + TSS region transcription start site region 18609
Tssr18610 2 80315703 to 80315744 41 + TSS region transcription start site region 18610
Tssr18611 2 80316756 to 80316768 12 + TSS region transcription start site region 18611
Tssr18612 2 80316827 to 80316841 14 + TSS region transcription start site region 18612
Tssr18613 2 80316843 to 80316873 30 + TSS region transcription start site region 18613
Tssr18614 2 80316879 to 80316880 1 + TSS region transcription start site region 18614
Tssr546 2 80316966 to 80316983 17 + TSS region transcription start site region 546
Tssr18615 2 80316988 to 80316994 6 + TSS region transcription start site region 18615
Tssr18616 2 80317004 to 80317024 20 + TSS region transcription start site region 18616
Tssr18617 2 80317354 to 80317363 9 + TSS region transcription start site region 18617
Tssr18618 2 80318016 to 80318024 8 + TSS region transcription start site region 18618
Tssr18619 2 80318030 to 80318041 11 + TSS region transcription start site region 18619
Tssr18620 2 80324384 to 80324388 4 + TSS region transcription start site region 18620
Nmf220 2 128781606 to 80175610 -48605996 heritable phenotypic marker neuroscience mutagenesis facility, 220