Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:79305106-82479441

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215 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga4 2 79255426 to 79333114 77688 + protein coding gene integrin alpha 4
Tssr18563 2 79311752 to 79311795 43 + TSS region transcription start site region 18563
Tssr18564 2 79321462 to 79321475 13 + TSS region transcription start site region 18564
Tssr18565 2 79325583 to 79325595 12 + TSS region transcription start site region 18565
Tssr18566 2 79326767 to 79326780 13 + TSS region transcription start site region 18566
Tssr18567 2 79326827 to 79326841 14 + TSS region transcription start site region 18567
Tssr18568 2 79327576 to 79327588 12 + TSS region transcription start site region 18568
Tssr18569 2 79328364 to 79328385 21 + TSS region transcription start site region 18569
Tssr18570 2 79328663 to 79328674 11 + TSS region transcription start site region 18570
Tssr18571 2 79328769 to 79328787 18 + TSS region transcription start site region 18571
Tssr18572 2 79328812 to 79328840 28 + TSS region transcription start site region 18572
Tssr18573 2 79329181 to 79329221 40 + TSS region transcription start site region 18573
Tssr18574 2 79329520 to 79329529 9 + TSS region transcription start site region 18574
Tssr18575 2 79330594 to 79330606 12 + TSS region transcription start site region 18575
Tssr18576 2 79330831 to 79330836 5 + TSS region transcription start site region 18576
Tssr18577 2 79330849 to 79330858 9 + TSS region transcription start site region 18577
Tssr18578 2 79330947 to 79330967 20 + TSS region transcription start site region 18578
Cerkl 2 79331216 to 79449223 118007 - protein coding gene ceramide kinase-like
Tssr18579 2 79332033 to 79332037 4 + TSS region transcription start site region 18579
Gm22606 2 79348365 to 79348467 102 + snRNA gene predicted gene, 22606
Gm13673 2 79359862 to 79360391 529 + pseudogene predicted gene 13673
Tssr24884 2 79368858 to 79368868 10 - TSS region transcription start site region 24884
Tssr24885 2 79369070 to 79369090 20 - TSS region transcription start site region 24885
Tssr24886 2 79369103 to 79369127 24 - TSS region transcription start site region 24886
Tssr24887 2 79370855 to 79370892 37 - TSS region transcription start site region 24887
Tssr24888 2 79391558 to 79391561 3 - TSS region transcription start site region 24888
Tssr24889 2 79409600 to 79409602 2 - TSS region transcription start site region 24889
Cpgi11841 2 79428517 to 79429032 515 CpG island CpG island 11841
Tssr24890 2 79428958 to 79428990 32 - TSS region transcription start site region 24890
Tssr24891 2 79451923 to 79451962 39 - TSS region transcription start site region 24891
Neurod1 2 79452641 to 79456636 3995 - protein coding gene neurogenic differentiation 1
Tssr24892 2 79453207 to 79453217 10 - TSS region transcription start site region 24892
Cpgi11842 2 79453894 to 79454895 1001 CpG island CpG island 11842
Tssr24893 2 79453916 to 79453960 44 - TSS region transcription start site region 24893
Gm26755 2 79453985 to 79461107 7122 + lincRNA gene predicted gene, 26755
Tssr24894 2 79454253 to 79454275 22 - TSS region transcription start site region 24894
Tssr24895 2 79454307 to 79454316 9 - TSS region transcription start site region 24895
Tssr24896 2 79454385 to 79454392 7 - TSS region transcription start site region 24896
Tssr24897 2 79454649 to 79454674 25 - TSS region transcription start site region 24897
Tssr24898 2 79454699 to 79454710 11 - TSS region transcription start site region 24898
Tssr24899 2 79454950 to 79454962 12 - TSS region transcription start site region 24899
Tssr24900 2 79454965 to 79454972 7 - TSS region transcription start site region 24900
Tssr24901 2 79454986 to 79454992 6 - TSS region transcription start site region 24901
Tssr24902 2 79455021 to 79455031 10 - TSS region transcription start site region 24902
Tssr24903 2 79455072 to 79455089 17 - TSS region transcription start site region 24903
Tssr24904 2 79456301 to 79456304 3 - TSS region transcription start site region 24904
Cpgi11843 2 79456555 to 79457021 466 CpG island CpG island 11843
Tssr24905 2 79456626 to 79456644 18 - TSS region transcription start site region 24905
Tssr24906 2 79456750 to 79456761 11 - TSS region transcription start site region 24906
Cpgi11844 2 79458830 to 79459435 605 CpG island CpG island 11844
Gm39867 2 79549771 to 79552400 2629 + lncRNA gene predicted gene, 39867
Tssr18580 2 79587751 to 79587771 20 + TSS region transcription start site region 18580
Tssr18581 2 79587792 to 79587799 7 + TSS region transcription start site region 18581
Tssr18582 2 79606295 to 79606302 7 + TSS region transcription start site region 18582
Tssr18583 2 79621605 to 79621635 30 + TSS region transcription start site region 18583
Gm46751 2 79629719 to 79635158 5439 - lncRNA gene predicted gene, 46751
Cpgi11845 2 79634923 to 79636267 1344 CpG island CpG island 11845
Tssr18584 2 79635270 to 79635290 20 + TSS region transcription start site region 18584
Tssr18585 2 79635300 to 79635320 20 + TSS region transcription start site region 18585
Itprid2 2 79635352 to 79672966 37614 + protein coding gene ITPR interacting domain containing 2
Tssr18586 2 79635370 to 79635410 40 + TSS region transcription start site region 18586
Tssr18587 2 79635416 to 79635441 25 + TSS region transcription start site region 18587
Tssr18588 2 79635444 to 79635463 19 + TSS region transcription start site region 18588
Tssr18589 2 79635599 to 79635650 51 + TSS region transcription start site region 18589
Tssr18590 2 79635654 to 79635671 17 + TSS region transcription start site region 18590
Tssr18591 2 79639194 to 79639207 13 + TSS region transcription start site region 18591
Tssr18592 2 79644526 to 79644551 25 + TSS region transcription start site region 18592
Tssr18593 2 79652001 to 79652024 23 + TSS region transcription start site region 18593
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436
Tssr24917 2 80128940 to 80128996 56 - TSS region transcription start site region 24917
Cpgi11847 2 80128958 to 80129248 290 CpG island CpG island 11847
Tssr24918 2 80129013 to 80129023 10 - TSS region transcription start site region 24918
Tssr24919 2 80129117 to 80129138 21 - TSS region transcription start site region 24919
Tssr24920 2 80129160 to 80129173 13 - TSS region transcription start site region 24920
Tssr24921 2 80129183 to 80129192 9 - TSS region transcription start site region 24921
Tssr24922 2 80129217 to 80129243 26 - TSS region transcription start site region 24922
Tssr24923 2 80129244 to 80129278 34 - TSS region transcription start site region 24923
Tssr24924 2 80129290 to 80129304 14 - TSS region transcription start site region 24924
Tssr24925 2 80129535 to 80129549 14 - TSS region transcription start site region 24925
Gm13674 2 80131930 to 80132752 822 + pseudogene predicted gene 13674
Tssr18597 2 80159134 to 80159136 2 + TSS region transcription start site region 18597
Etohila 2 80175610 to 80175769 159 QTL ethanol induced locomotor activity
Etohr 2 80175610 to 80175769 159 QTL ethanol response acute
Hdl7 2 80175610 to 80175769 159 QTL high density lipoprotein (HDL) level 7
Actre2 2 80175610 to 80175769 159 QTL activity response to ethanol 2
D2Mit94 2 80175610 to 80175769 159 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 94
Bomd3 2 80175610 to 80175769 159 QTL bone mineral density 3
Lith24 2 80175610 to 80175769 159 QTL lithogenic gene 24
D2Mit1009 2 80205982 to 80206130 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1009
Tssr24926 2 80257792 to 80257797 5 - TSS region transcription start site region 24926
Gm36153 2 80283457 to 80292288 8831 - lncRNA gene predicted gene, 36153
Tssr24927 2 80292401 to 80292411 10 - TSS region transcription start site region 24927
Tssr18598 2 80292468 to 80292509 41 + TSS region transcription start site region 18598
Prdx6b 2 80292472 to 80295356 2884 + protein coding gene peroxiredoxin 6B
Tssr18599 2 80292793 to 80292803 10 + TSS region transcription start site region 18599
Tssr18600 2 80292815 to 80292839 24 + TSS region transcription start site region 18600
Tssr24928 2 80300960 to 80300967 7 - TSS region transcription start site region 24928
Tssr18601 2 80302255 to 80302258 3 + TSS region transcription start site region 18601
Tssr18602 2 80302311 to 80302318 7 + TSS region transcription start site region 18602
Tssr18603 2 80302328 to 80302331 3 + TSS region transcription start site region 18603
Tssr18604 2 80302344 to 80302355 11 + TSS region transcription start site region 18604
Tssr18605 2 80302359 to 80302364 5 + TSS region transcription start site region 18605
Tssr24929 2 80304611 to 80304626 15 - TSS region transcription start site region 24929
Gm18693 2 80305857 to 80306609 752 - pseudogene predicted gene, 18693
Cpgi11848 2 80315382 to 80316166 784 CpG island CpG island 11848
Tssr18606 2 80315461 to 80315511 50 + TSS region transcription start site region 18606
Dnajc10 2 80315466 to 80354043 38577 + protein coding gene DnaJ heat shock protein family (Hsp40) member C10
Tssr18607 2 80315516 to 80315528 12 + TSS region transcription start site region 18607
Tssr18608 2 80315535 to 80315546 11 + TSS region transcription start site region 18608
Tssr18609 2 80315669 to 80315678 9 + TSS region transcription start site region 18609
Tssr18610 2 80315703 to 80315744 41 + TSS region transcription start site region 18610
Tssr18611 2 80316756 to 80316768 12 + TSS region transcription start site region 18611
Tssr18612 2 80316827 to 80316841 14 + TSS region transcription start site region 18612
Tssr18613 2 80316843 to 80316873 30 + TSS region transcription start site region 18613
Tssr18614 2 80316879 to 80316880 1 + TSS region transcription start site region 18614
Tssr546 2 80316966 to 80316983 17 + TSS region transcription start site region 546
Tssr18615 2 80316988 to 80316994 6 + TSS region transcription start site region 18615
Tssr18616 2 80317004 to 80317024 20 + TSS region transcription start site region 18616
Tssr18617 2 80317354 to 80317363 9 + TSS region transcription start site region 18617
Tssr18618 2 80318016 to 80318024 8 + TSS region transcription start site region 18618
Tssr18619 2 80318030 to 80318041 11 + TSS region transcription start site region 18619
Tssr18620 2 80324384 to 80324388 4 + TSS region transcription start site region 18620
Gm13752 2 80394897 to 80400525 5628 + antisense lncRNA gene predicted gene 13752
Frzb 2 80411970 to 80447396 35426 - protein coding gene frizzled-related protein
Tssr24930 2 80438641 to 80438644 3 - TSS region transcription start site region 24930
Cpgi11849 2 80446101 to 80447838 1737 CpG island CpG island 11849
Tssr24931 2 80447058 to 80447072 14 - TSS region transcription start site region 24931
Tssr24932 2 80447087 to 80447090 3 - TSS region transcription start site region 24932
Tssr24933 2 80447238 to 80447245 7 - TSS region transcription start site region 24933
Tssr24934 2 80447247 to 80447266 19 - TSS region transcription start site region 24934
Tssr24935 2 80447359 to 80447376 17 - TSS region transcription start site region 24935
Tssr24936 2 80447386 to 80447406 20 - TSS region transcription start site region 24936
Tssr24937 2 80447407 to 80447425 18 - TSS region transcription start site region 24937
Gm13687 2 80499230 to 80499511 281 + pseudogene predicted gene 13687
Tssr24938 2 80499813 to 80499817 4 - TSS region transcription start site region 24938
Nckap1 2 80500512 to 80581299 80787 - protein coding gene NCK-associated protein 1
Tssr24939 2 80524672 to 80524684 12 - TSS region transcription start site region 24939
Tssr24940 2 80524692 to 80524697 5 - TSS region transcription start site region 24940
Tssr24941 2 80524702 to 80524711 9 - TSS region transcription start site region 24941
Tssr24942 2 80524721 to 80524738 17 - TSS region transcription start site region 24942
Gm13689 2 80549740 to 80550392 652 - pseudogene predicted gene 13689
Gm24461 2 80558685 to 80558787 102 + snRNA gene predicted gene, 24461
Cpgi11850 2 80580385 to 80581738 1353 CpG island CpG island 11850
Tssr24943 2 80580888 to 80580899 11 - TSS region transcription start site region 24943
Tssr24944 2 80580995 to 80581020 25 - TSS region transcription start site region 24944
Tssr24945 2 80581068 to 80581181 113 - TSS region transcription start site region 24945
Tssr24946 2 80581215 to 80581228 13 - TSS region transcription start site region 24946
Tssr24947 2 80581234 to 80581266 32 - TSS region transcription start site region 24947
Tssr24948 2 80581272 to 80581293 21 - TSS region transcription start site region 24948
Tssr24949 2 80581463 to 80581479 16 - TSS region transcription start site region 24949
Tssr24950 2 80581507 to 80581519 12 - TSS region transcription start site region 24950
D2Mit75 2 80584726 to 80584838 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 75
Gm13688 2 80602733 to 80603340 607 + pseudogene predicted gene 13688
Tssr18621 2 80617185 to 80617290 105 + TSS region transcription start site region 18621
Dusp19 2 80617214 to 80631661 14447 + protein coding gene dual specificity phosphatase 19
Tssr18622 2 80617347 to 80617354 7 + TSS region transcription start site region 18622
Mir684-1 2 80628705 to 80628790 85 - miRNA gene microRNA 684-1
Gm13690 2 80629284 to 80629568 284 - pseudogene predicted gene 13690
Tssr18623 2 80631747 to 80631755 8 + TSS region transcription start site region 18623
2210011G09Rik 2 80633737 to 80634464 727 unclassified gene RIKEN cDNA 2210011G09 gene
Tssr18624 2 80635226 to 80635237 11 + TSS region transcription start site region 18624
Tssr18625 2 80635243 to 80635250 7 + TSS region transcription start site region 18625
Tssr18626 2 80635252 to 80635269 17 + TSS region transcription start site region 18626
Tssr18627 2 80635275 to 80635282 7 + TSS region transcription start site region 18627
Cpgi11851 2 80638712 to 80639262 550 CpG island CpG island 11851
Tssr18628 2 80638798 to 80638834 36 + TSS region transcription start site region 18628
Nup35 2 80638812 to 80660071 21259 + protein coding gene nucleoporin 35
Tssr18629 2 80638844 to 80638856 12 + TSS region transcription start site region 18629
Tssr18630 2 80643980 to 80643989 9 + TSS region transcription start site region 18630
Gm36282 2 80699766 to 80727997 28231 + lncRNA gene predicted gene, 36282
Gm25420 2 80707589 to 80707715 126 + snoRNA gene predicted gene, 25420
Tssr24951 2 80717990 to 80717996 6 - TSS region transcription start site region 24951
D2Mit248 2 80739810 to 80739957 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 248
Hsl1 2 80739810 to 80739957 147 QTL hyperoxia susceptibility locus 1
Tssr18631 2 80837083 to 80837094 11 + TSS region transcription start site region 18631
Gm4735 2 80837141 to 80838442 1301 + pseudogene predicted gene 4735
Gm22652 2 80850288 to 80850418 130 + snoRNA gene predicted gene, 22652
Gm13700 2 80861155 to 80862282 1127 - pseudogene predicted gene 13700
Gm13755 2 80890106 to 80894441 4335 + pseudogene predicted gene 13755
Gm13756 2 80908741 to 80909355 614 - pseudogene predicted gene 13756
D2Ucl8 2 80914069 to 80914341 272 DNA segment DNA segment, Chr 2, University College London 8
Gm23452 2 80984083 to 80984189 106 - snRNA gene predicted gene, 23452