Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:78807339-79438362

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39865 2 78750919 to 78828785 77866 + lncRNA gene predicted gene, 39865
Gm17014 2 78845286 to 78845453 167 - pseudogene predicted gene 17014
Tssr18520 2 78845469 to 78845498 29 + TSS region transcription start site region 18520
4930401B11Rik 2 78845491 to 78846581 1090 unclassified gene RIKEN cDNA 4930401B11 gene
Ube2e3 2 78868243 to 78921288 53045 + protein coding gene ubiquitin-conjugating enzyme E2E 3
Cpgi11839 2 78868341 to 78869955 1614 CpG island CpG island 11839
Tssr18521 2 78868725 to 78868756 31 + TSS region transcription start site region 18521
Tssr18522 2 78868795 to 78868808 13 + TSS region transcription start site region 18522
Tssr18523 2 78869009 to 78869109 100 + TSS region transcription start site region 18523
Tssr18524 2 78869120 to 78869142 22 + TSS region transcription start site region 18524
Tssr18525 2 78869152 to 78869163 11 + TSS region transcription start site region 18525
Tssr18526 2 78869201 to 78869262 61 + TSS region transcription start site region 18526
Tssr18527 2 78869298 to 78869321 23 + TSS region transcription start site region 18527
Tssr18528 2 78869345 to 78869376 31 + TSS region transcription start site region 18528
Tssr18529 2 78869482 to 78869511 29 + TSS region transcription start site region 18529
Tssr18530 2 78872400 to 78872419 19 + TSS region transcription start site region 18530
Tssr18531 2 78884300 to 78884304 4 + TSS region transcription start site region 18531
Tssr18532 2 78918407 to 78918410 3 + TSS region transcription start site region 18532
Tssr18533 2 78923490 to 78923494 4 + TSS region transcription start site region 18533
BC030308 2 78925403 to 78928691 3288 unclassified gene cDNA sequence BC030308
Gm37004 2 78972672 to 79098851 126179 + unclassified gene predicted gene, 37004
Tssr18534 2 78972728 to 78972737 9 + TSS region transcription start site region 18534
Tssr24878 2 78973024 to 78973035 11 - TSS region transcription start site region 24878
Tssr24879 2 78973049 to 78973057 8 - TSS region transcription start site region 24879
Gm14466 2 79022821 to 79023271 450 - pseudogene predicted gene 14466
Gm14469 2 79038533 to 79038734 201 - pseudogene predicted gene 14469
Tssr18535 2 79065558 to 79065569 11 + TSS region transcription start site region 18535
Gm35748 2 79122339 to 79123362 1023 + lncRNA gene predicted gene, 35748
Tssr18536 2 79122710 to 79122721 11 + TSS region transcription start site region 18536
Tssr18537 2 79122725 to 79122753 28 + TSS region transcription start site region 18537
Tssr18538 2 79122764 to 79122788 24 + TSS region transcription start site region 18538
Tssr18539 2 79122790 to 79122811 21 + TSS region transcription start site region 18539
Tssr18540 2 79126662 to 79126685 23 + TSS region transcription start site region 18540
Tssr24880 2 79132371 to 79132379 8 - TSS region transcription start site region 24880
Gm14465 2 79161047 to 79161595 548 - pseudogene predicted gene 14465
Gm39866 2 79230985 to 79260204 29219 - lncRNA gene predicted gene, 39866
Tssr18541 2 79231261 to 79231270 9 + TSS region transcription start site region 18541
Gm35813 2 79231270 to 79235417 4147 + lncRNA gene predicted gene, 35813
Tssr18542 2 79231276 to 79231287 11 + TSS region transcription start site region 18542
Tssr18543 2 79231291 to 79231304 13 + TSS region transcription start site region 18543
Tssr18544 2 79237250 to 79237271 21 + TSS region transcription start site region 18544
Tssr18545 2 79253367 to 79253397 30 + TSS region transcription start site region 18545
Tssr24881 2 79254689 to 79254720 31 - TSS region transcription start site region 24881
Tssr24882 2 79254741 to 79254754 13 - TSS region transcription start site region 24882
Tssr18546 2 79254919 to 79254926 7 + TSS region transcription start site region 18546
Tssr18547 2 79255217 to 79255243 26 + TSS region transcription start site region 18547
Cpgi11840 2 79255323 to 79255974 651 CpG island CpG island 11840
Tssr18548 2 79255343 to 79255399 56 + TSS region transcription start site region 18548
Tssr18549 2 79255417 to 79255432 15 + TSS region transcription start site region 18549
Itga4 2 79255426 to 79333114 77688 + protein coding gene integrin alpha 4
Tssr18550 2 79255437 to 79255448 11 + TSS region transcription start site region 18550
Tssr18551 2 79255449 to 79255470 21 + TSS region transcription start site region 18551
Tssr18552 2 79255510 to 79255552 42 + TSS region transcription start site region 18552
Tssr18553 2 79255554 to 79255652 98 + TSS region transcription start site region 18553
Tssr18554 2 79255724 to 79255725 1 + TSS region transcription start site region 18554
Tssr18555 2 79255746 to 79255760 14 + TSS region transcription start site region 18555
Tssr18556 2 79255937 to 79255952 15 + TSS region transcription start site region 18556
Tssr18557 2 79256115 to 79256141 26 + TSS region transcription start site region 18557
Tssr18558 2 79256165 to 79256176 11 + TSS region transcription start site region 18558
Tssr24883 2 79258028 to 79258060 32 - TSS region transcription start site region 24883
Tssr18559 2 79266038 to 79266044 6 + TSS region transcription start site region 18559
Tssr18560 2 79279096 to 79279113 17 + TSS region transcription start site region 18560
Tssr18561 2 79284803 to 79284808 5 + TSS region transcription start site region 18561
Tssr18562 2 79289230 to 79289252 22 + TSS region transcription start site region 18562
Tssr18563 2 79311752 to 79311795 43 + TSS region transcription start site region 18563
Tssr18564 2 79321462 to 79321475 13 + TSS region transcription start site region 18564
Tssr18565 2 79325583 to 79325595 12 + TSS region transcription start site region 18565
Tssr18566 2 79326767 to 79326780 13 + TSS region transcription start site region 18566
Tssr18567 2 79326827 to 79326841 14 + TSS region transcription start site region 18567
Tssr18568 2 79327576 to 79327588 12 + TSS region transcription start site region 18568
Tssr18569 2 79328364 to 79328385 21 + TSS region transcription start site region 18569
Tssr18570 2 79328663 to 79328674 11 + TSS region transcription start site region 18570
Tssr18571 2 79328769 to 79328787 18 + TSS region transcription start site region 18571
Tssr18572 2 79328812 to 79328840 28 + TSS region transcription start site region 18572
Tssr18573 2 79329181 to 79329221 40 + TSS region transcription start site region 18573
Tssr18574 2 79329520 to 79329529 9 + TSS region transcription start site region 18574
Tssr18575 2 79330594 to 79330606 12 + TSS region transcription start site region 18575
Tssr18576 2 79330831 to 79330836 5 + TSS region transcription start site region 18576
Tssr18577 2 79330849 to 79330858 9 + TSS region transcription start site region 18577
Tssr18578 2 79330947 to 79330967 20 + TSS region transcription start site region 18578
Cerkl 2 79331216 to 79449223 118007 - protein coding gene ceramide kinase-like
Tssr18579 2 79332033 to 79332037 4 + TSS region transcription start site region 18579
Gm22606 2 79348365 to 79348467 102 + snRNA gene predicted gene, 22606
Gm13673 2 79359862 to 79360391 529 + pseudogene predicted gene 13673
Tssr24884 2 79368858 to 79368868 10 - TSS region transcription start site region 24884
Tssr24885 2 79369070 to 79369090 20 - TSS region transcription start site region 24885
Tssr24886 2 79369103 to 79369127 24 - TSS region transcription start site region 24886
Tssr24887 2 79370855 to 79370892 37 - TSS region transcription start site region 24887
Tssr24888 2 79391558 to 79391561 3 - TSS region transcription start site region 24888
Tssr24889 2 79409600 to 79409602 2 - TSS region transcription start site region 24889
Cpgi11841 2 79428517 to 79429032 515 CpG island CpG island 11841
Tssr24890 2 79428958 to 79428990 32 - TSS region transcription start site region 24890