Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:78352407-82542425

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290 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr18517 2 78357624 to 78357630 6 + TSS region transcription start site region 18517
Tssr18518 2 78369986 to 78369990 4 + TSS region transcription start site region 18518
Gm46750 2 78387873 to 78421131 33258 + lncRNA gene predicted gene, 46750
Gm14460 2 78512698 to 78513336 638 - pseudogene predicted gene 14460
D2Mit159 2 78516768 to 78516883 115 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 159
Gm23149 2 78550508 to 78550737 229 - unclassified non-coding RNA gene predicted gene, 23149
Gm14464 2 78597669 to 78598922 1253 + pseudogene predicted gene 14464
Gm14463 2 78657429 to 78657926 497 + pseudogene predicted gene 14463
Tssr18519 2 78709501 to 78709508 7 + TSS region transcription start site region 18519
Gm39865 2 78750919 to 78828785 77866 + lncRNA gene predicted gene, 39865
Gm17014 2 78845286 to 78845453 167 - pseudogene predicted gene 17014
Tssr18520 2 78845469 to 78845498 29 + TSS region transcription start site region 18520
4930401B11Rik 2 78845491 to 78846581 1090 unclassified gene RIKEN cDNA 4930401B11 gene
Ube2e3 2 78868243 to 78921288 53045 + protein coding gene ubiquitin-conjugating enzyme E2E 3
Cpgi11839 2 78868341 to 78869955 1614 CpG island CpG island 11839
Tssr18521 2 78868725 to 78868756 31 + TSS region transcription start site region 18521
Tssr18522 2 78868795 to 78868808 13 + TSS region transcription start site region 18522
Tssr18523 2 78869009 to 78869109 100 + TSS region transcription start site region 18523
Tssr18524 2 78869120 to 78869142 22 + TSS region transcription start site region 18524
Tssr18525 2 78869152 to 78869163 11 + TSS region transcription start site region 18525
Tssr18526 2 78869201 to 78869262 61 + TSS region transcription start site region 18526
Tssr18527 2 78869298 to 78869321 23 + TSS region transcription start site region 18527
Tssr18528 2 78869345 to 78869376 31 + TSS region transcription start site region 18528
Tssr18529 2 78869482 to 78869511 29 + TSS region transcription start site region 18529
Tssr18530 2 78872400 to 78872419 19 + TSS region transcription start site region 18530
Tssr18531 2 78884300 to 78884304 4 + TSS region transcription start site region 18531
Tssr18532 2 78918407 to 78918410 3 + TSS region transcription start site region 18532
Tssr18533 2 78923490 to 78923494 4 + TSS region transcription start site region 18533
BC030308 2 78925403 to 78928691 3288 unclassified gene cDNA sequence BC030308
Gm37004 2 78972672 to 79098851 126179 + unclassified gene predicted gene, 37004
Tssr18534 2 78972728 to 78972737 9 + TSS region transcription start site region 18534
Tssr24878 2 78973024 to 78973035 11 - TSS region transcription start site region 24878
Tssr24879 2 78973049 to 78973057 8 - TSS region transcription start site region 24879
Gm14466 2 79022821 to 79023271 450 - pseudogene predicted gene 14466
Gm14469 2 79038533 to 79038734 201 - pseudogene predicted gene 14469
Tssr18535 2 79065558 to 79065569 11 + TSS region transcription start site region 18535
Gm35748 2 79122339 to 79123362 1023 + lncRNA gene predicted gene, 35748
Tssr18536 2 79122710 to 79122721 11 + TSS region transcription start site region 18536
Tssr18537 2 79122725 to 79122753 28 + TSS region transcription start site region 18537
Tssr18538 2 79122764 to 79122788 24 + TSS region transcription start site region 18538
Tssr18539 2 79122790 to 79122811 21 + TSS region transcription start site region 18539
Tssr18540 2 79126662 to 79126685 23 + TSS region transcription start site region 18540
Tssr24880 2 79132371 to 79132379 8 - TSS region transcription start site region 24880
Gm14465 2 79161047 to 79161595 548 - pseudogene predicted gene 14465
Gm39866 2 79230985 to 79260204 29219 - lncRNA gene predicted gene, 39866
Tssr18541 2 79231261 to 79231270 9 + TSS region transcription start site region 18541
Gm35813 2 79231270 to 79235417 4147 + lncRNA gene predicted gene, 35813
Tssr18542 2 79231276 to 79231287 11 + TSS region transcription start site region 18542
Tssr18543 2 79231291 to 79231304 13 + TSS region transcription start site region 18543
Tssr18544 2 79237250 to 79237271 21 + TSS region transcription start site region 18544
Tssr18545 2 79253367 to 79253397 30 + TSS region transcription start site region 18545
Tssr24881 2 79254689 to 79254720 31 - TSS region transcription start site region 24881
Tssr24882 2 79254741 to 79254754 13 - TSS region transcription start site region 24882
Tssr18546 2 79254919 to 79254926 7 + TSS region transcription start site region 18546
Tssr18547 2 79255217 to 79255243 26 + TSS region transcription start site region 18547
Cpgi11840 2 79255323 to 79255974 651 CpG island CpG island 11840
Tssr18548 2 79255343 to 79255399 56 + TSS region transcription start site region 18548
Tssr18549 2 79255417 to 79255432 15 + TSS region transcription start site region 18549
Itga4 2 79255426 to 79333114 77688 + protein coding gene integrin alpha 4
Tssr18550 2 79255437 to 79255448 11 + TSS region transcription start site region 18550
Tssr18551 2 79255449 to 79255470 21 + TSS region transcription start site region 18551
Tssr18552 2 79255510 to 79255552 42 + TSS region transcription start site region 18552
Tssr18553 2 79255554 to 79255652 98 + TSS region transcription start site region 18553
Tssr18554 2 79255724 to 79255725 1 + TSS region transcription start site region 18554
Tssr18555 2 79255746 to 79255760 14 + TSS region transcription start site region 18555
Tssr18556 2 79255937 to 79255952 15 + TSS region transcription start site region 18556
Tssr18557 2 79256115 to 79256141 26 + TSS region transcription start site region 18557
Tssr18558 2 79256165 to 79256176 11 + TSS region transcription start site region 18558
Tssr24883 2 79258028 to 79258060 32 - TSS region transcription start site region 24883
Tssr18559 2 79266038 to 79266044 6 + TSS region transcription start site region 18559
Tssr18560 2 79279096 to 79279113 17 + TSS region transcription start site region 18560
Tssr18561 2 79284803 to 79284808 5 + TSS region transcription start site region 18561
Tssr18562 2 79289230 to 79289252 22 + TSS region transcription start site region 18562
Tssr18563 2 79311752 to 79311795 43 + TSS region transcription start site region 18563
Tssr18564 2 79321462 to 79321475 13 + TSS region transcription start site region 18564
Tssr18565 2 79325583 to 79325595 12 + TSS region transcription start site region 18565
Tssr18566 2 79326767 to 79326780 13 + TSS region transcription start site region 18566
Tssr18567 2 79326827 to 79326841 14 + TSS region transcription start site region 18567
Tssr18568 2 79327576 to 79327588 12 + TSS region transcription start site region 18568
Tssr18569 2 79328364 to 79328385 21 + TSS region transcription start site region 18569
Tssr18570 2 79328663 to 79328674 11 + TSS region transcription start site region 18570
Tssr18571 2 79328769 to 79328787 18 + TSS region transcription start site region 18571
Tssr18572 2 79328812 to 79328840 28 + TSS region transcription start site region 18572
Tssr18573 2 79329181 to 79329221 40 + TSS region transcription start site region 18573
Tssr18574 2 79329520 to 79329529 9 + TSS region transcription start site region 18574
Tssr18575 2 79330594 to 79330606 12 + TSS region transcription start site region 18575
Tssr18576 2 79330831 to 79330836 5 + TSS region transcription start site region 18576
Tssr18577 2 79330849 to 79330858 9 + TSS region transcription start site region 18577
Tssr18578 2 79330947 to 79330967 20 + TSS region transcription start site region 18578
Cerkl 2 79331216 to 79449223 118007 - protein coding gene ceramide kinase-like
Tssr18579 2 79332033 to 79332037 4 + TSS region transcription start site region 18579
Gm22606 2 79348365 to 79348467 102 + snRNA gene predicted gene, 22606
Gm13673 2 79359862 to 79360391 529 + pseudogene predicted gene 13673
Tssr24884 2 79368858 to 79368868 10 - TSS region transcription start site region 24884
Tssr24885 2 79369070 to 79369090 20 - TSS region transcription start site region 24885
Tssr24886 2 79369103 to 79369127 24 - TSS region transcription start site region 24886
Tssr24887 2 79370855 to 79370892 37 - TSS region transcription start site region 24887
Tssr24888 2 79391558 to 79391561 3 - TSS region transcription start site region 24888
Tssr24889 2 79409600 to 79409602 2 - TSS region transcription start site region 24889
Cpgi11841 2 79428517 to 79429032 515 CpG island CpG island 11841
Tssr24890 2 79428958 to 79428990 32 - TSS region transcription start site region 24890
Tssr24891 2 79451923 to 79451962 39 - TSS region transcription start site region 24891
Neurod1 2 79452641 to 79456636 3995 - protein coding gene neurogenic differentiation 1
Tssr24892 2 79453207 to 79453217 10 - TSS region transcription start site region 24892
Cpgi11842 2 79453894 to 79454895 1001 CpG island CpG island 11842
Tssr24893 2 79453916 to 79453960 44 - TSS region transcription start site region 24893
Gm26755 2 79453985 to 79461107 7122 + lincRNA gene predicted gene, 26755
Tssr24894 2 79454253 to 79454275 22 - TSS region transcription start site region 24894
Tssr24895 2 79454307 to 79454316 9 - TSS region transcription start site region 24895
Tssr24896 2 79454385 to 79454392 7 - TSS region transcription start site region 24896
Tssr24897 2 79454649 to 79454674 25 - TSS region transcription start site region 24897
Tssr24898 2 79454699 to 79454710 11 - TSS region transcription start site region 24898
Tssr24899 2 79454950 to 79454962 12 - TSS region transcription start site region 24899
Tssr24900 2 79454965 to 79454972 7 - TSS region transcription start site region 24900
Tssr24901 2 79454986 to 79454992 6 - TSS region transcription start site region 24901
Tssr24902 2 79455021 to 79455031 10 - TSS region transcription start site region 24902
Tssr24903 2 79455072 to 79455089 17 - TSS region transcription start site region 24903
Tssr24904 2 79456301 to 79456304 3 - TSS region transcription start site region 24904
Cpgi11843 2 79456555 to 79457021 466 CpG island CpG island 11843
Tssr24905 2 79456626 to 79456644 18 - TSS region transcription start site region 24905
Tssr24906 2 79456750 to 79456761 11 - TSS region transcription start site region 24906
Cpgi11844 2 79458830 to 79459435 605 CpG island CpG island 11844
Gm39867 2 79549771 to 79552400 2629 + lncRNA gene predicted gene, 39867
Tssr18580 2 79587751 to 79587771 20 + TSS region transcription start site region 18580
Tssr18581 2 79587792 to 79587799 7 + TSS region transcription start site region 18581
Tssr18582 2 79606295 to 79606302 7 + TSS region transcription start site region 18582
Tssr18583 2 79621605 to 79621635 30 + TSS region transcription start site region 18583
Gm46751 2 79629719 to 79635158 5439 - lncRNA gene predicted gene, 46751
Cpgi11845 2 79634923 to 79636267 1344 CpG island CpG island 11845
Tssr18584 2 79635270 to 79635290 20 + TSS region transcription start site region 18584
Tssr18585 2 79635300 to 79635320 20 + TSS region transcription start site region 18585
Itprid2 2 79635352 to 79672966 37614 + protein coding gene ITPR interacting domain containing 2
Tssr18586 2 79635370 to 79635410 40 + TSS region transcription start site region 18586
Tssr18587 2 79635416 to 79635441 25 + TSS region transcription start site region 18587
Tssr18588 2 79635444 to 79635463 19 + TSS region transcription start site region 18588
Tssr18589 2 79635599 to 79635650 51 + TSS region transcription start site region 18589
Tssr18590 2 79635654 to 79635671 17 + TSS region transcription start site region 18590
Tssr18591 2 79639194 to 79639207 13 + TSS region transcription start site region 18591
Tssr18592 2 79644526 to 79644551 25 + TSS region transcription start site region 18592
Tssr18593 2 79652001 to 79652024 23 + TSS region transcription start site region 18593
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436
Tssr24917 2 80128940 to 80128996 56 - TSS region transcription start site region 24917
Cpgi11847 2 80128958 to 80129248 290 CpG island CpG island 11847
Tssr24918 2 80129013 to 80129023 10 - TSS region transcription start site region 24918
Tssr24919 2 80129117 to 80129138 21 - TSS region transcription start site region 24919
Tssr24920 2 80129160 to 80129173 13 - TSS region transcription start site region 24920
Tssr24921 2 80129183 to 80129192 9 - TSS region transcription start site region 24921
Tssr24922 2 80129217 to 80129243 26 - TSS region transcription start site region 24922
Tssr24923 2 80129244 to 80129278 34 - TSS region transcription start site region 24923
Tssr24924 2 80129290 to 80129304 14 - TSS region transcription start site region 24924
Tssr24925 2 80129535 to 80129549 14 - TSS region transcription start site region 24925
Gm13674 2 80131930 to 80132752 822 + pseudogene predicted gene 13674
Tssr18597 2 80159134 to 80159136 2 + TSS region transcription start site region 18597
Etohr 2 80175610 to 80175769 159 QTL ethanol response acute
Actre2 2 80175610 to 80175769 159 QTL activity response to ethanol 2
Bomd3 2 80175610 to 80175769 159 QTL bone mineral density 3
D2Mit94 2 80175610 to 80175769 159 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 94
Etohila 2 80175610 to 80175769 159 QTL ethanol induced locomotor activity
Hdl7 2 80175610 to 80175769 159 QTL high density lipoprotein (HDL) level 7
Lith24 2 80175610 to 80175769 159 QTL lithogenic gene 24
D2Mit1009 2 80205982 to 80206130 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1009
Tssr24926 2 80257792 to 80257797 5 - TSS region transcription start site region 24926
Gm36153 2 80283457 to 80292288 8831 - lncRNA gene predicted gene, 36153
Tssr24927 2 80292401 to 80292411 10 - TSS region transcription start site region 24927
Tssr18598 2 80292468 to 80292509 41 + TSS region transcription start site region 18598
Prdx6b 2 80292472 to 80295356 2884 + protein coding gene peroxiredoxin 6B
Tssr18599 2 80292793 to 80292803 10 + TSS region transcription start site region 18599
Tssr18600 2 80292815 to 80292839 24 + TSS region transcription start site region 18600
Tssr24928 2 80300960 to 80300967 7 - TSS region transcription start site region 24928
Tssr18601 2 80302255 to 80302258 3 + TSS region transcription start site region 18601
Tssr18602 2 80302311 to 80302318 7 + TSS region transcription start site region 18602
Tssr18603 2 80302328 to 80302331 3 + TSS region transcription start site region 18603
Tssr18604 2 80302344 to 80302355 11 + TSS region transcription start site region 18604
Tssr18605 2 80302359 to 80302364 5 + TSS region transcription start site region 18605
Tssr24929 2 80304611 to 80304626 15 - TSS region transcription start site region 24929
Gm18693 2 80305857 to 80306609 752 - pseudogene predicted gene, 18693
Cpgi11848 2 80315382 to 80316166 784 CpG island CpG island 11848
Tssr18606 2 80315461 to 80315511 50 + TSS region transcription start site region 18606
Dnajc10 2 80315466 to 80354043 38577 + protein coding gene DnaJ heat shock protein family (Hsp40) member C10
Tssr18607 2 80315516 to 80315528 12 + TSS region transcription start site region 18607
Tssr18608 2 80315535 to 80315546 11 + TSS region transcription start site region 18608
Tssr18609 2 80315669 to 80315678 9 + TSS region transcription start site region 18609