Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:77619152-80119163

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp385b 2 77410622 to 77817706 407084 - protein coding gene zinc finger protein 385B
Tssr24860 2 77621278 to 77621286 8 - TSS region transcription start site region 24860
Gm17927 2 77660284 to 77661332 1048 - pseudogene predicted gene, 17927
Tssr24861 2 77703252 to 77703265 13 - TSS region transcription start site region 24861
Tssr24862 2 77703305 to 77703325 20 - TSS region transcription start site region 24862
Tssr24863 2 77703375 to 77703417 42 - TSS region transcription start site region 24863
Tssr24864 2 77706062 to 77706073 11 - TSS region transcription start site region 24864
Tssr18511 2 77725753 to 77725767 14 + TSS region transcription start site region 18511
Gm35431 2 77761144 to 77777684 16540 + lncRNA gene predicted gene, 35431
Cpgi11837 2 77815869 to 77817328 1459 CpG island CpG island 11837
Tssr24865 2 77816593 to 77816628 35 - TSS region transcription start site region 24865
Tssr24866 2 77816680 to 77816691 11 - TSS region transcription start site region 24866
Tssr24867 2 77816710 to 77816727 17 - TSS region transcription start site region 24867
Tssr24868 2 77816736 to 77816748 12 - TSS region transcription start site region 24868
Tssr24869 2 77816758 to 77816815 57 - TSS region transcription start site region 24869
Tssr24870 2 77816879 to 77816931 52 - TSS region transcription start site region 24870
Tssr24871 2 77817425 to 77817462 37 - TSS region transcription start site region 24871
Tssr24872 2 77817491 to 77817494 3 - TSS region transcription start site region 24872
Tssr24873 2 77817668 to 77817682 14 - TSS region transcription start site region 24873
Gm13661 2 77840616 to 77842936 2320 + lincRNA gene predicted gene 13661
Gm13727 2 77879753 to 77881467 1714 - unclassified non-coding RNA gene predicted gene 13727
Cwc22 2 77895653 to 77946356 50703 - protein coding gene CWC22 spliceosome-associated protein
Cpgi11838 2 77945740 to 77946475 735 CpG island CpG island 11838
Tssr24874 2 77946183 to 77946199 16 - TSS region transcription start site region 24874
Tssr24875 2 77946314 to 77946327 13 - TSS region transcription start site region 24875
Tssr24876 2 77946331 to 77946373 42 - TSS region transcription start site region 24876
Tssr24877 2 77946376 to 77946392 16 - TSS region transcription start site region 24877
Gm13726 2 77962269 to 77963062 793 - pseudogene predicted gene 13726
Tssr18512 2 78051155 to 78051181 26 + TSS region transcription start site region 18512
4930440I19Rik 2 78051177 to 78194430 143253 + lincRNA gene RIKEN cDNA 4930440I19 gene
Tssr18513 2 78051220 to 78051228 8 + TSS region transcription start site region 18513
Tssr18514 2 78214787 to 78214792 5 + TSS region transcription start site region 18514
D2Ucl6 2 78235111 to 78235309 198 DNA segment DNA segment, Chr 2, University College London 6
Gm14461 2 78237547 to 78302230 64683 + lincRNA gene predicted gene 14461
Gm39864 2 78266034 to 78272039 6005 + lncRNA gene predicted gene, 39864
Tssr18515 2 78293160 to 78293311 151 + TSS region transcription start site region 18515
Tssr18516 2 78304683 to 78304691 8 + TSS region transcription start site region 18516
Tssr18517 2 78357624 to 78357630 6 + TSS region transcription start site region 18517
Tssr18518 2 78369986 to 78369990 4 + TSS region transcription start site region 18518
Gm46750 2 78387873 to 78421131 33258 + lncRNA gene predicted gene, 46750
Gm14460 2 78512698 to 78513336 638 - pseudogene predicted gene 14460
D2Mit159 2 78516768 to 78516883 115 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 159
Gm23149 2 78550508 to 78550737 229 - unclassified non-coding RNA gene predicted gene, 23149
Gm14464 2 78597669 to 78598922 1253 + pseudogene predicted gene 14464
Gm14463 2 78657429 to 78657926 497 + pseudogene predicted gene 14463
Tssr18519 2 78709501 to 78709508 7 + TSS region transcription start site region 18519
Gm39865 2 78750919 to 78828785 77866 + lncRNA gene predicted gene, 39865
Gm17014 2 78845286 to 78845453 167 - pseudogene predicted gene 17014
Tssr18520 2 78845469 to 78845498 29 + TSS region transcription start site region 18520
4930401B11Rik 2 78845491 to 78846581 1090 unclassified gene RIKEN cDNA 4930401B11 gene
Ube2e3 2 78868243 to 78921288 53045 + protein coding gene ubiquitin-conjugating enzyme E2E 3
Cpgi11839 2 78868341 to 78869955 1614 CpG island CpG island 11839
Tssr18521 2 78868725 to 78868756 31 + TSS region transcription start site region 18521
Tssr18522 2 78868795 to 78868808 13 + TSS region transcription start site region 18522
Tssr18523 2 78869009 to 78869109 100 + TSS region transcription start site region 18523
Tssr18524 2 78869120 to 78869142 22 + TSS region transcription start site region 18524
Tssr18525 2 78869152 to 78869163 11 + TSS region transcription start site region 18525
Tssr18526 2 78869201 to 78869262 61 + TSS region transcription start site region 18526
Tssr18527 2 78869298 to 78869321 23 + TSS region transcription start site region 18527
Tssr18528 2 78869345 to 78869376 31 + TSS region transcription start site region 18528
Tssr18529 2 78869482 to 78869511 29 + TSS region transcription start site region 18529
Tssr18530 2 78872400 to 78872419 19 + TSS region transcription start site region 18530
Tssr18531 2 78884300 to 78884304 4 + TSS region transcription start site region 18531
Tssr18532 2 78918407 to 78918410 3 + TSS region transcription start site region 18532
Tssr18533 2 78923490 to 78923494 4 + TSS region transcription start site region 18533
BC030308 2 78925403 to 78928691 3288 unclassified gene cDNA sequence BC030308
Gm37004 2 78972672 to 79098851 126179 + unclassified gene predicted gene, 37004
Tssr18534 2 78972728 to 78972737 9 + TSS region transcription start site region 18534
Tssr24878 2 78973024 to 78973035 11 - TSS region transcription start site region 24878
Tssr24879 2 78973049 to 78973057 8 - TSS region transcription start site region 24879
Gm14466 2 79022821 to 79023271 450 - pseudogene predicted gene 14466
Gm14469 2 79038533 to 79038734 201 - pseudogene predicted gene 14469
Tssr18535 2 79065558 to 79065569 11 + TSS region transcription start site region 18535
Gm35748 2 79122339 to 79123362 1023 + lncRNA gene predicted gene, 35748
Tssr18536 2 79122710 to 79122721 11 + TSS region transcription start site region 18536
Tssr18537 2 79122725 to 79122753 28 + TSS region transcription start site region 18537
Tssr18538 2 79122764 to 79122788 24 + TSS region transcription start site region 18538
Tssr18539 2 79122790 to 79122811 21 + TSS region transcription start site region 18539
Tssr18540 2 79126662 to 79126685 23 + TSS region transcription start site region 18540
Tssr24880 2 79132371 to 79132379 8 - TSS region transcription start site region 24880
Gm14465 2 79161047 to 79161595 548 - pseudogene predicted gene 14465
Gm39866 2 79230985 to 79260204 29219 - lncRNA gene predicted gene, 39866
Tssr18541 2 79231261 to 79231270 9 + TSS region transcription start site region 18541
Gm35813 2 79231270 to 79235417 4147 + lncRNA gene predicted gene, 35813
Tssr18542 2 79231276 to 79231287 11 + TSS region transcription start site region 18542
Tssr18543 2 79231291 to 79231304 13 + TSS region transcription start site region 18543
Tssr18544 2 79237250 to 79237271 21 + TSS region transcription start site region 18544
Tssr18545 2 79253367 to 79253397 30 + TSS region transcription start site region 18545
Tssr24881 2 79254689 to 79254720 31 - TSS region transcription start site region 24881
Tssr24882 2 79254741 to 79254754 13 - TSS region transcription start site region 24882
Tssr18546 2 79254919 to 79254926 7 + TSS region transcription start site region 18546
Tssr18547 2 79255217 to 79255243 26 + TSS region transcription start site region 18547
Cpgi11840 2 79255323 to 79255974 651 CpG island CpG island 11840
Tssr18548 2 79255343 to 79255399 56 + TSS region transcription start site region 18548
Tssr18549 2 79255417 to 79255432 15 + TSS region transcription start site region 18549
Itga4 2 79255426 to 79333114 77688 + protein coding gene integrin alpha 4
Tssr18550 2 79255437 to 79255448 11 + TSS region transcription start site region 18550
Tssr18551 2 79255449 to 79255470 21 + TSS region transcription start site region 18551
Tssr18552 2 79255510 to 79255552 42 + TSS region transcription start site region 18552
Tssr18553 2 79255554 to 79255652 98 + TSS region transcription start site region 18553
Tssr18554 2 79255724 to 79255725 1 + TSS region transcription start site region 18554
Tssr18555 2 79255746 to 79255760 14 + TSS region transcription start site region 18555
Tssr18556 2 79255937 to 79255952 15 + TSS region transcription start site region 18556
Tssr18557 2 79256115 to 79256141 26 + TSS region transcription start site region 18557
Tssr18558 2 79256165 to 79256176 11 + TSS region transcription start site region 18558
Tssr24883 2 79258028 to 79258060 32 - TSS region transcription start site region 24883
Tssr18559 2 79266038 to 79266044 6 + TSS region transcription start site region 18559
Tssr18560 2 79279096 to 79279113 17 + TSS region transcription start site region 18560
Tssr18561 2 79284803 to 79284808 5 + TSS region transcription start site region 18561
Tssr18562 2 79289230 to 79289252 22 + TSS region transcription start site region 18562
Tssr18563 2 79311752 to 79311795 43 + TSS region transcription start site region 18563
Tssr18564 2 79321462 to 79321475 13 + TSS region transcription start site region 18564
Tssr18565 2 79325583 to 79325595 12 + TSS region transcription start site region 18565
Tssr18566 2 79326767 to 79326780 13 + TSS region transcription start site region 18566
Tssr18567 2 79326827 to 79326841 14 + TSS region transcription start site region 18567
Tssr18568 2 79327576 to 79327588 12 + TSS region transcription start site region 18568
Tssr18569 2 79328364 to 79328385 21 + TSS region transcription start site region 18569
Tssr18570 2 79328663 to 79328674 11 + TSS region transcription start site region 18570
Tssr18571 2 79328769 to 79328787 18 + TSS region transcription start site region 18571
Tssr18572 2 79328812 to 79328840 28 + TSS region transcription start site region 18572
Tssr18573 2 79329181 to 79329221 40 + TSS region transcription start site region 18573
Tssr18574 2 79329520 to 79329529 9 + TSS region transcription start site region 18574
Tssr18575 2 79330594 to 79330606 12 + TSS region transcription start site region 18575
Tssr18576 2 79330831 to 79330836 5 + TSS region transcription start site region 18576
Tssr18577 2 79330849 to 79330858 9 + TSS region transcription start site region 18577
Tssr18578 2 79330947 to 79330967 20 + TSS region transcription start site region 18578
Cerkl 2 79331216 to 79449223 118007 - protein coding gene ceramide kinase-like
Tssr18579 2 79332033 to 79332037 4 + TSS region transcription start site region 18579
Gm22606 2 79348365 to 79348467 102 + snRNA gene predicted gene, 22606
Gm13673 2 79359862 to 79360391 529 + pseudogene predicted gene 13673
Tssr24884 2 79368858 to 79368868 10 - TSS region transcription start site region 24884
Tssr24885 2 79369070 to 79369090 20 - TSS region transcription start site region 24885
Tssr24886 2 79369103 to 79369127 24 - TSS region transcription start site region 24886
Tssr24887 2 79370855 to 79370892 37 - TSS region transcription start site region 24887
Tssr24888 2 79391558 to 79391561 3 - TSS region transcription start site region 24888
Tssr24889 2 79409600 to 79409602 2 - TSS region transcription start site region 24889
Cpgi11841 2 79428517 to 79429032 515 CpG island CpG island 11841
Tssr24890 2 79428958 to 79428990 32 - TSS region transcription start site region 24890
Tssr24891 2 79451923 to 79451962 39 - TSS region transcription start site region 24891
Neurod1 2 79452641 to 79456636 3995 - protein coding gene neurogenic differentiation 1
Tssr24892 2 79453207 to 79453217 10 - TSS region transcription start site region 24892
Cpgi11842 2 79453894 to 79454895 1001 CpG island CpG island 11842
Tssr24893 2 79453916 to 79453960 44 - TSS region transcription start site region 24893
Gm26755 2 79453985 to 79461107 7122 + lincRNA gene predicted gene, 26755
Tssr24894 2 79454253 to 79454275 22 - TSS region transcription start site region 24894
Tssr24895 2 79454307 to 79454316 9 - TSS region transcription start site region 24895
Tssr24896 2 79454385 to 79454392 7 - TSS region transcription start site region 24896
Tssr24897 2 79454649 to 79454674 25 - TSS region transcription start site region 24897
Tssr24898 2 79454699 to 79454710 11 - TSS region transcription start site region 24898
Tssr24899 2 79454950 to 79454962 12 - TSS region transcription start site region 24899
Tssr24900 2 79454965 to 79454972 7 - TSS region transcription start site region 24900
Tssr24901 2 79454986 to 79454992 6 - TSS region transcription start site region 24901
Tssr24902 2 79455021 to 79455031 10 - TSS region transcription start site region 24902
Tssr24903 2 79455072 to 79455089 17 - TSS region transcription start site region 24903
Tssr24904 2 79456301 to 79456304 3 - TSS region transcription start site region 24904
Cpgi11843 2 79456555 to 79457021 466 CpG island CpG island 11843
Tssr24905 2 79456626 to 79456644 18 - TSS region transcription start site region 24905
Tssr24906 2 79456750 to 79456761 11 - TSS region transcription start site region 24906
Cpgi11844 2 79458830 to 79459435 605 CpG island CpG island 11844
Gm39867 2 79549771 to 79552400 2629 + lncRNA gene predicted gene, 39867
Tssr18580 2 79587751 to 79587771 20 + TSS region transcription start site region 18580
Tssr18581 2 79587792 to 79587799 7 + TSS region transcription start site region 18581
Tssr18582 2 79606295 to 79606302 7 + TSS region transcription start site region 18582
Tssr18583 2 79621605 to 79621635 30 + TSS region transcription start site region 18583
Gm46751 2 79629719 to 79635158 5439 - lncRNA gene predicted gene, 46751
Cpgi11845 2 79634923 to 79636267 1344 CpG island CpG island 11845
Tssr18584 2 79635270 to 79635290 20 + TSS region transcription start site region 18584
Tssr18585 2 79635300 to 79635320 20 + TSS region transcription start site region 18585
Itprid2 2 79635352 to 79672966 37614 + protein coding gene ITPR interacting domain containing 2
Tssr18586 2 79635370 to 79635410 40 + TSS region transcription start site region 18586
Tssr18587 2 79635416 to 79635441 25 + TSS region transcription start site region 18587
Tssr18588 2 79635444 to 79635463 19 + TSS region transcription start site region 18588
Tssr18589 2 79635599 to 79635650 51 + TSS region transcription start site region 18589
Tssr18590 2 79635654 to 79635671 17 + TSS region transcription start site region 18590
Tssr18591 2 79639194 to 79639207 13 + TSS region transcription start site region 18591
Tssr18592 2 79644526 to 79644551 25 + TSS region transcription start site region 18592
Tssr18593 2 79652001 to 79652024 23 + TSS region transcription start site region 18593
Cpgi11846 2 79696032 to 79696208 176 CpG island CpG island 11846
Ppp1r1c 2 79707780 to 79818496 110716 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 1C
Tssr18594 2 79707916 to 79707927 11 + TSS region transcription start site region 18594
Tssr18595 2 79786560 to 79786569 9 + TSS region transcription start site region 18595
Tssr18596 2 79786597 to 79786609 12 + TSS region transcription start site region 18596
Pde1a 2 79834453 to 80129458 295005 - protein coding gene phosphodiesterase 1A, calmodulin-dependent
Tssr24907 2 79908389 to 79908403 14 - TSS region transcription start site region 24907
Tssr24908 2 79908413 to 79908415 2 - TSS region transcription start site region 24908
Tssr24909 2 79908428 to 79908438 10 - TSS region transcription start site region 24909
Tssr24910 2 79985723 to 79985727 4 - TSS region transcription start site region 24910
Tssr24911 2 80005965 to 80005999 34 - TSS region transcription start site region 24911
Tssr24912 2 80010117 to 80010129 12 - TSS region transcription start site region 24912
Tssr545 2 80025701 to 80025738 37 - TSS region transcription start site region 545
Tssr24913 2 80038884 to 80038921 37 - TSS region transcription start site region 24913
Tssr24914 2 80038939 to 80038948 9 - TSS region transcription start site region 24914
Tssr24915 2 80039002 to 80039017 15 - TSS region transcription start site region 24915
Tssr24916 2 80065223 to 80065227 4 - TSS region transcription start site region 24916
D2Mit474 2 80100565 to 80100677 112 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 474
D2Mit436 2 80104269 to 80104416 147 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 436