Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74730808-79080822

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514 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aips2 2 65119051 to 74881866 9762815 QTL autoimmune pancreatitis severity 2
Hrtfm1 2 67761596 to 75134589 7372993 QTL heart failure modifier 1
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Hoxd3 2 74711993 to 74748271 36278 + protein coding gene homeobox D3
Del(2Hoxd1-Hoxd4)55Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 55
Del(2Hoxd1-Hoxd4)56Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 56
Gm28230 2 74726728 to 74747918 21190 + protein coding gene predicted gene 28230
AI448005 2 74731335 to 74731751 416 unclassified gene expressed sequence AI448005
Cpgi11807 2 74732635 to 74733514 879 CpG island CpG island 11807
Cpgi11808 2 74735412 to 74735700 288 CpG island CpG island 11808
Cpgi11809 2 74736164 to 74736765 601 CpG island CpG island 11809
Tssr535 2 74736396 to 74736435 39 + TSS region transcription start site region 535
Cpgi11810 2 74740289 to 74740715 426 CpG island CpG island 11810
Tssr18442 2 74745676 to 74745681 5 + TSS region transcription start site region 18442
Tssr18443 2 74745684 to 74745693 9 + TSS region transcription start site region 18443
Tssr18444 2 74745719 to 74745758 39 + TSS region transcription start site region 18444
Cpgi11811 2 74745986 to 74747450 1464 CpG island CpG island 11811
Haglr 2 74748422 to 74762896 14474 - bidirectional promoter lncRNA gene Hoxd antisense growth associated long non-coding RNA
Cpgi11812 2 74749349 to 74750312 963 CpG island CpG island 11812
Cpgi11813 2 74752515 to 74753644 1129 CpG island CpG island 11813
Gm14424 2 74752684 to 74753744 1060 + lincRNA gene predicted gene 14424
Tssr18445 2 74752976 to 74752989 13 + TSS region transcription start site region 18445
Tssr24629 2 74753430 to 74753444 14 - TSS region transcription start site region 24629
Tssr24630 2 74753455 to 74753463 8 - TSS region transcription start site region 24630
Tssr24631 2 74753474 to 74753478 4 - TSS region transcription start site region 24631
Gm14426 2 74754455 to 74755097 642 + lincRNA gene predicted gene 14426
Cpgi11814 2 74762650 to 74763708 1058 CpG island CpG island 11814
Hoxd1 2 74762980 to 74765142 2162 + protein coding gene homeobox D1
D2Tfv14 2 74764670 to 74764895 225 DNA segment DNA segment, Chr 2, Thomas F. Vogt 14
Cpgi11815 2 74825669 to 74826439 770 CpG island CpG island 11815
Tssr18446 2 74825802 to 74825858 56 + TSS region transcription start site region 18446
Mtx2 2 74825812 to 74876748 50936 + protein coding gene metaxin 2
Tssr18447 2 74825864 to 74825879 15 + TSS region transcription start site region 18447
Gm14425 2 74855706 to 74856305 599 + pseudogene predicted gene 14425
Gm14427 2 74886372 to 74887006 634 - pseudogene predicted gene 14427
Tssr536 2 74887028 to 74887029 1 - TSS region transcription start site region 536
n-R5s198 2 74935415 to 74935514 99 - rRNA gene nuclear encoded rRNA 5S 198
Gm46748 2 75061610 to 75086930 25320 + lncRNA gene predicted gene, 46748
D2Mit247 2 75065420 to 75065539 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 247
D2Mit329 2 75065420 to 75065540 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 329
Lfibq18 2 75089647 to 75089647 0 QTL liver fibrosis QTL 18
Tssr24632 2 75119310 to 75119321 11 - TSS region transcription start site region 24632
Gm13652 2 75124871 to 75137798 12927 - lincRNA gene predicted gene 13652
Tssr24633 2 75133672 to 75133681 9 - TSS region transcription start site region 24633
Tssr24634 2 75133708 to 75133722 14 - TSS region transcription start site region 24634
Tssr24635 2 75133754 to 75133767 13 - TSS region transcription start site region 24635
D2Mit418 2 75134416 to 75134589 173 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 418
Cpgi11816 2 75137318 to 75138167 849 CpG island CpG island 11816
Tssr24636 2 75137491 to 75137506 15 - TSS region transcription start site region 24636
2600014E21Rik 2 75138843 to 75317820 178977 + lincRNA gene RIKEN cDNA 2600014E21 gene
Tssr18448 2 75138846 to 75138859 13 + TSS region transcription start site region 18448
Tssr18449 2 75138968 to 75138991 23 + TSS region transcription start site region 18449
A330043C09Rik 2 75147118 to 75177658 30540 - lincRNA gene RIKEN cDNA A330043C09 gene
Rps6-ps4 2 75191073 to 75191822 749 - pseudogene ribosomal protein S6, pseudogene 4
Tssr24637 2 75191854 to 75191855 1 - TSS region transcription start site region 24637
Gm13653 2 75192277 to 75192759 482 + pseudogene predicted gene 13653
Tssr18450 2 75248465 to 75248482 17 + TSS region transcription start site region 18450
Gm34401 2 75274211 to 75285457 11246 - lncRNA gene predicted gene, 34401
Gm18494 2 75302096 to 75303225 1129 - pseudogene predicted gene, 18494
Gm39857 2 75309677 to 75396106 86429 - lncRNA gene predicted gene, 39857
Gm37243 2 75348111 to 75348705 594 - unclassified gene predicted gene, 37243
Gm32927 2 75360072 to 75364889 4817 + lncRNA gene predicted gene, 32927
Gm39856 2 75376098 to 75381346 5248 + lncRNA gene predicted gene, 39856
D2Mit219 2 75416716 to 75416850 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 219
Cpgi11817 2 75425027 to 75425227 200 CpG island CpG island 11817
Cpgi11818 2 75434687 to 75435174 487 CpG island CpG island 11818
9430019J16Rik 2 75436057 to 75444179 8122 - lncRNA gene RIKEN cDNA 9430019J16 gene
Gm13658 2 75436057 to 75444179 8122 + lincRNA gene predicted gene 13658
Gm13660 2 75458966 to 75464788 5822 - lincRNA gene predicted gene 13660
Tssr24638 2 75467812 to 75467824 12 - TSS region transcription start site region 24638
Tssr18451 2 75482126 to 75482132 6 + TSS region transcription start site region 18451
Gm39854 2 75508949 to 75515027 6078 + lncRNA gene predicted gene, 39854
D2Dcr136 2 75513277 to 75513379 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 136
Tssr18452 2 75582446 to 75582449 3 + TSS region transcription start site region 18452
Cpgi11819 2 75589536 to 75589739 203 CpG island CpG island 11819
Cpgi11820 2 75593541 to 75593840 299 CpG island CpG island 11820
Cpgi11821 2 75609677 to 75610082 405 CpG island CpG island 11821
Gm39853 2 75613386 to 75615353 1967 + lncRNA gene predicted gene, 39853
Gm13655 2 75632638 to 75633382 744 - pseudogene predicted gene 13655
Tssr24639 2 75633532 to 75633543 11 - TSS region transcription start site region 24639
Tssr24640 2 75633544 to 75633557 13 - TSS region transcription start site region 24640
Tssr24641 2 75633580 to 75633594 14 - TSS region transcription start site region 24641
Tssr24642 2 75633852 to 75633863 11 - TSS region transcription start site region 24642
Tssr18453 2 75633973 to 75634005 32 + TSS region transcription start site region 18453
Tssr18454 2 75634011 to 75634042 31 + TSS region transcription start site region 18454
Gm39858 2 75634015 to 75634375 360 + lncRNA gene predicted gene, 39858
Tssr18455 2 75634056 to 75634067 11 + TSS region transcription start site region 18455
Tssr18456 2 75634614 to 75634618 4 + TSS region transcription start site region 18456
Gm39859 2 75651173 to 75659182 8009 - lncRNA gene predicted gene, 39859
Cpgi11822 2 75658575 to 75660080 1505 CpG island CpG island 11822
Tssr24643 2 75658886 to 75658959 73 - TSS region transcription start site region 24643
Tssr18457 2 75659056 to 75659091 35 + TSS region transcription start site region 18457
Tssr18458 2 75659092 to 75659108 16 + TSS region transcription start site region 18458
Gm24574 2 75659244 to 75659317 73 + miRNA gene predicted gene, 24574
Tssr18459 2 75659253 to 75659266 13 + TSS region transcription start site region 18459
Hnrnpa3 2 75659261 to 75669407 10146 + protein coding gene heterogeneous nuclear ribonucleoprotein A3
Tssr24644 2 75659775 to 75659817 42 - TSS region transcription start site region 24644
Nfe2l2 2 75675513 to 75704641 29128 - protein coding gene nuclear factor, erythroid derived 2, like 2
Tssr24645 2 75676238 to 75676272 34 - TSS region transcription start site region 24645
Tssr24646 2 75676390 to 75676402 12 - TSS region transcription start site region 24646
Tssr24647 2 75676528 to 75676553 25 - TSS region transcription start site region 24647
Tssr24648 2 75676633 to 75676650 17 - TSS region transcription start site region 24648
Tssr24649 2 75677578 to 75677593 15 - TSS region transcription start site region 24649
Tssr24650 2 75679392 to 75679405 13 - TSS region transcription start site region 24650
Tssr24651 2 75679411 to 75679432 21 - TSS region transcription start site region 24651
Tssr18460 2 75683199 to 75683211 12 + TSS region transcription start site region 18460
Tssr24652 2 75685504 to 75685523 19 - TSS region transcription start site region 24652
Gm24996 2 75686740 to 75686838 98 - snRNA gene predicted gene, 24996
Tssr24653 2 75690608 to 75690610 2 - TSS region transcription start site region 24653
Cpgi11823 2 75703381 to 75705413 2032 CpG island CpG island 11823
Tssr24654 2 75703975 to 75703991 16 - TSS region transcription start site region 24654
Tssr18461 2 75704129 to 75704140 11 + TSS region transcription start site region 18461
Tssr537 2 75704398 to 75704402 4 - TSS region transcription start site region 537
Tssr538 2 75704428 to 75704441 13 - TSS region transcription start site region 538
Tssr24655 2 75704470 to 75704533 63 - TSS region transcription start site region 24655
Tssr24656 2 75704535 to 75704552 17 - TSS region transcription start site region 24656
Tssr539 2 75704596 to 75704614 18 - TSS region transcription start site region 539
Tssr540 2 75704644 to 75704679 35 - TSS region transcription start site region 540
E030042O20Rik 2 75704770 to 75710024 5254 + unclassified non-coding RNA gene RIKEN cDNA E030042O20 gene
Tssr18462 2 75704851 to 75704880 29 + TSS region transcription start site region 18462
Tssr24657 2 75705013 to 75705022 9 - TSS region transcription start site region 24657
Tssr24658 2 75705032 to 75705065 33 - TSS region transcription start site region 24658
Tssr24659 2 75705104 to 75705116 12 - TSS region transcription start site region 24659
Gm46749 2 75706071 to 75713229 7158 - lncRNA gene predicted gene, 46749
Tssr24660 2 75713020 to 75713039 19 - TSS region transcription start site region 24660
Tssr18463 2 75715044 to 75715049 5 + TSS region transcription start site region 18463
Tssr18464 2 75720947 to 75720950 3 + TSS region transcription start site region 18464
Tssr18465 2 75729528 to 75729533 5 + TSS region transcription start site region 18465
Gm13656 2 75729592 to 75730172 580 - lincRNA gene predicted gene 13656
Tssr24661 2 75768023 to 75768028 5 - TSS region transcription start site region 24661
Gm34657 2 75768831 to 75771659 2828 + lncRNA gene predicted gene, 34657
Tssr18466 2 75768924 to 75768925 1 + TSS region transcription start site region 18466
Tssr18467 2 75773804 to 75773809 5 + TSS region transcription start site region 18467
Tssr18468 2 75777175 to 75777193 18 + TSS region transcription start site region 18468
Gm13657 2 75777188 to 75782306 5118 + lncRNA gene predicted gene 13657
Tssr24662 2 75782004 to 75782021 17 - TSS region transcription start site region 24662
Tssr18469 2 75808246 to 75808270 24 + TSS region transcription start site region 18469
Gm13669 2 75808358 to 75808814 456 + pseudogene predicted gene 13669
Gm34861 2 75814018 to 75832126 18108 - lncRNA gene predicted gene, 34861
Gm13670 2 75822028 to 75822793 765 - pseudogene predicted gene 13670
D2Dcr137 2 75828671 to 75828766 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 137
Cpgi11824 2 75831724 to 75832781 1057 CpG island CpG island 11824
Tssr18470 2 75832134 to 75832141 7 + TSS region transcription start site region 18470
Tssr18471 2 75832168 to 75832194 26 + TSS region transcription start site region 18471
Agps 2 75832177 to 75931350 99173 + protein coding gene alkylglycerone phosphate synthase
Tssr18472 2 75832237 to 75832284 47 + TSS region transcription start site region 18472
Tssr18473 2 75832332 to 75832343 11 + TSS region transcription start site region 18473
Tssr18474 2 75832452 to 75832461 9 + TSS region transcription start site region 18474
Tssr18475 2 75832462 to 75832473 11 + TSS region transcription start site region 18475
Tssr18476 2 75834634 to 75834638 4 + TSS region transcription start site region 18476
Tssr18477 2 75870714 to 75870718 4 + TSS region transcription start site region 18477
Tssr18478 2 75871959 to 75871963 4 + TSS region transcription start site region 18478
Tssr18479 2 75892260 to 75892292 32 + TSS region transcription start site region 18479
Tssr18480 2 75900696 to 75900700 4 + TSS region transcription start site region 18480
Tssr18481 2 75927424 to 75927444 20 + TSS region transcription start site region 18481
Ttc30b 2 75935849 to 75938462 2613 - protein coding gene tetratricopeptide repeat domain 30B
Cpgi11825 2 75938367 to 75938539 172 CpG island CpG island 11825
Tssr24663 2 75938407 to 75938453 46 - TSS region transcription start site region 24663
D2Ertd468e 2 75952872 to 75953104 232 DNA segment DNA segment, Chr 2, ERATO Doi 468, expressed
Ttc30a2 2 75976172 to 75978179 2007 - protein coding gene tetratricopeptide repeat domain 30A2
Tssr24664 2 75978164 to 75978206 42 - TSS region transcription start site region 24664
Ttc30a1 2 75979106 to 75981967 2861 - protein coding gene tetratricopeptide repeat domain 30A1
Cpgi11826 2 75981614 to 75981874 260 CpG island CpG island 11826
Tssr24665 2 75981738 to 75981797 59 - TSS region transcription start site region 24665
Pde11a 2 75989141 to 76338774 349633 - protein coding gene phosphodiesterase 11A
Tssr18482 2 76028153 to 76028178 25 + TSS region transcription start site region 18482
Tssr24666 2 76215024 to 76215049 25 - TSS region transcription start site region 24666
Tssr24667 2 76215363 to 76215405 42 - TSS region transcription start site region 24667
Tssr24668 2 76240132 to 76240136 4 - TSS region transcription start site region 24668
Tssr24669 2 76259217 to 76259229 12 - TSS region transcription start site region 24669
Gm44337 2 76318482 to 76318595 113 + miRNA gene predicted gene, 44337
Cpgi11827 2 76338591 to 76339152 561 CpG island CpG island 11827
Tssr24670 2 76338931 to 76338965 34 - TSS region transcription start site region 24670
Tssr18483 2 76344463 to 76344464 1 + TSS region transcription start site region 18483
Cyct 2 76353942 to 76360450 6508 - protein coding gene cytochrome c, testis
Tssr24671 2 76360374 to 76360391 17 - TSS region transcription start site region 24671
Tssr24672 2 76360400 to 76360414 14 - TSS region transcription start site region 24672
Tssr24673 2 76360425 to 76360439 14 - TSS region transcription start site region 24673
Tssr24674 2 76360447 to 76360463 16 - TSS region transcription start site region 24674
Cpgi11828 2 76369697 to 76370751 1054 CpG island CpG island 11828
Tssr18484 2 76369927 to 76369951 24 + TSS region transcription start site region 18484
Tssr18485 2 76369967 to 76370024 57 + TSS region transcription start site region 18485
Rbm45 2 76369984 to 76383768 13784 + protein coding gene RNA binding motif protein 45
Tssr18486 2 76370031 to 76370042 11 + TSS region transcription start site region 18486
Tssr18487 2 76370053 to 76370060 7 + TSS region transcription start site region 18487
Tssr541 2 76370335 to 76370366 31 + TSS region transcription start site region 541
Tssr18488 2 76383565 to 76383576 11 + TSS region transcription start site region 18488
B230104C14Rik 2 76388562 to 76389559 997 unclassified gene RIKEN cDNA B230104C14 gene
Cpgi11829 2 76405953 to 76407586 1633 CpG island CpG island 11829
Osbpl6 2 76406508 to 76600647 194139 + protein coding gene oxysterol binding protein-like 6
Tssr18489 2 76406529 to 76406580 51 + TSS region transcription start site region 18489
Tssr18490 2 76406581 to 76406592 11 + TSS region transcription start site region 18490
Gm23164 2 76479219 to 76479329 110 + miRNA gene predicted gene, 23164
Tssr18491 2 76499044 to 76499077 33 + TSS region transcription start site region 18491
Tssr18492 2 76499089 to 76499098 9 + TSS region transcription start site region 18492
Tssr18493 2 76499108 to 76499128 20 + TSS region transcription start site region 18493