Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74727118-75597658

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aips2 2 65119051 to 74881866 9762815 QTL autoimmune pancreatitis severity 2
Hrtfm1 2 67761596 to 75134589 7372993 QTL heart failure modifier 1
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd4-Hoxd11)36Ddu 2 74679558 to 74729160 49602 chromosomal deletion deletion, Chr 2, Denis Duboule 36
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Del(2Hoxd4-Hoxd9)40Ddu 2 74697763 to 74729160 31397 chromosomal deletion deletion, Chr 2, Denis Duboule 40
Hoxd3 2 74711993 to 74748271 36278 + protein coding gene homeobox D3
Hoxd4 2 74721978 to 74729160 7182 + protein coding gene homeobox D4
Del(2Hoxd1-Hoxd4)55Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 55
Del(2Hoxd1-Hoxd4)56Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 56
Gm28230 2 74726728 to 74747918 21190 + protein coding gene predicted gene 28230
Tssr18439 2 74727190 to 74727201 11 + TSS region transcription start site region 18439
Cpgi11806 2 74727226 to 74727838 612 CpG island CpG island 11806
Tssr18440 2 74727249 to 74727270 21 + TSS region transcription start site region 18440
Tssr18441 2 74729829 to 74729833 4 + TSS region transcription start site region 18441
AI448005 2 74731335 to 74731751 416 unclassified gene expressed sequence AI448005
Cpgi11807 2 74732635 to 74733514 879 CpG island CpG island 11807
Cpgi11808 2 74735412 to 74735700 288 CpG island CpG island 11808
Cpgi11809 2 74736164 to 74736765 601 CpG island CpG island 11809
Tssr535 2 74736396 to 74736435 39 + TSS region transcription start site region 535
Cpgi11810 2 74740289 to 74740715 426 CpG island CpG island 11810
Tssr18442 2 74745676 to 74745681 5 + TSS region transcription start site region 18442
Tssr18443 2 74745684 to 74745693 9 + TSS region transcription start site region 18443
Tssr18444 2 74745719 to 74745758 39 + TSS region transcription start site region 18444
Cpgi11811 2 74745986 to 74747450 1464 CpG island CpG island 11811
Haglr 2 74748422 to 74762896 14474 - bidirectional promoter lncRNA gene Hoxd antisense growth associated long non-coding RNA
Cpgi11812 2 74749349 to 74750312 963 CpG island CpG island 11812
Cpgi11813 2 74752515 to 74753644 1129 CpG island CpG island 11813
Gm14424 2 74752684 to 74753744 1060 + lincRNA gene predicted gene 14424
Tssr18445 2 74752976 to 74752989 13 + TSS region transcription start site region 18445
Tssr24629 2 74753430 to 74753444 14 - TSS region transcription start site region 24629
Tssr24630 2 74753455 to 74753463 8 - TSS region transcription start site region 24630
Tssr24631 2 74753474 to 74753478 4 - TSS region transcription start site region 24631
Gm14426 2 74754455 to 74755097 642 + lincRNA gene predicted gene 14426
Cpgi11814 2 74762650 to 74763708 1058 CpG island CpG island 11814
Hoxd1 2 74762980 to 74765142 2162 + protein coding gene homeobox D1
D2Tfv14 2 74764670 to 74764895 225 DNA segment DNA segment, Chr 2, Thomas F. Vogt 14
Cpgi11815 2 74825669 to 74826439 770 CpG island CpG island 11815
Tssr18446 2 74825802 to 74825858 56 + TSS region transcription start site region 18446
Mtx2 2 74825812 to 74876748 50936 + protein coding gene metaxin 2
Tssr18447 2 74825864 to 74825879 15 + TSS region transcription start site region 18447
Gm14425 2 74855706 to 74856305 599 + pseudogene predicted gene 14425
Gm14427 2 74886372 to 74887006 634 - pseudogene predicted gene 14427
Tssr536 2 74887028 to 74887029 1 - TSS region transcription start site region 536
n-R5s198 2 74935415 to 74935514 99 - rRNA gene nuclear encoded rRNA 5S 198
Gm46748 2 75061610 to 75086930 25320 + lncRNA gene predicted gene, 46748
D2Mit329 2 75065420 to 75065540 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 329
D2Mit247 2 75065420 to 75065539 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 247
Lfibq18 2 75089647 to 75089647 0 QTL liver fibrosis QTL 18
Tssr24632 2 75119310 to 75119321 11 - TSS region transcription start site region 24632
Gm13652 2 75124871 to 75137798 12927 - lincRNA gene predicted gene 13652
Tssr24633 2 75133672 to 75133681 9 - TSS region transcription start site region 24633
Tssr24634 2 75133708 to 75133722 14 - TSS region transcription start site region 24634
Tssr24635 2 75133754 to 75133767 13 - TSS region transcription start site region 24635
D2Mit418 2 75134416 to 75134589 173 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 418
Cpgi11816 2 75137318 to 75138167 849 CpG island CpG island 11816
Tssr24636 2 75137491 to 75137506 15 - TSS region transcription start site region 24636
2600014E21Rik 2 75138843 to 75317820 178977 + lincRNA gene RIKEN cDNA 2600014E21 gene
Tssr18448 2 75138846 to 75138859 13 + TSS region transcription start site region 18448
Tssr18449 2 75138968 to 75138991 23 + TSS region transcription start site region 18449
A330043C09Rik 2 75147118 to 75177658 30540 - lincRNA gene RIKEN cDNA A330043C09 gene
Rps6-ps4 2 75191073 to 75191822 749 - pseudogene ribosomal protein S6, pseudogene 4
Tssr24637 2 75191854 to 75191855 1 - TSS region transcription start site region 24637
Gm13653 2 75192277 to 75192759 482 + pseudogene predicted gene 13653
Tssr18450 2 75248465 to 75248482 17 + TSS region transcription start site region 18450
Gm34401 2 75274211 to 75285457 11246 - lncRNA gene predicted gene, 34401
Gm18494 2 75302096 to 75303225 1129 - pseudogene predicted gene, 18494
Gm39857 2 75309677 to 75396106 86429 - lncRNA gene predicted gene, 39857
Gm37243 2 75348111 to 75348705 594 - unclassified gene predicted gene, 37243
Gm32927 2 75360072 to 75364889 4817 + lncRNA gene predicted gene, 32927
Gm39856 2 75376098 to 75381346 5248 + lncRNA gene predicted gene, 39856
D2Mit219 2 75416716 to 75416850 134 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 219
Cpgi11817 2 75425027 to 75425227 200 CpG island CpG island 11817
Cpgi11818 2 75434687 to 75435174 487 CpG island CpG island 11818
9430019J16Rik 2 75436057 to 75444179 8122 - lncRNA gene RIKEN cDNA 9430019J16 gene
Gm13658 2 75436057 to 75444179 8122 + lincRNA gene predicted gene 13658
Gm13660 2 75458966 to 75464788 5822 - lincRNA gene predicted gene 13660
Tssr24638 2 75467812 to 75467824 12 - TSS region transcription start site region 24638
Tssr18451 2 75482126 to 75482132 6 + TSS region transcription start site region 18451
Gm39854 2 75508949 to 75515027 6078 + lncRNA gene predicted gene, 39854
D2Dcr136 2 75513277 to 75513379 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 136
Tssr18452 2 75582446 to 75582449 3 + TSS region transcription start site region 18452
Cpgi11819 2 75589536 to 75589739 203 CpG island CpG island 11819
Cpgi11820 2 75593541 to 75593840 299 CpG island CpG island 11820