Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Aips2 | 2 | 9762815 | QTL | autoimmune pancreatitis severity 2 | ||
Hrtfm1 | 2 | 7372993 | QTL | heart failure modifier 1 | ||
Del(2Hoxd1-Hoxd13)54Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 54 | ||
Del(2Hoxd8-Hoxd13)11Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 11 | ||
Del(2Hoxd8-Hoxd13)9Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 9 | ||
Del(2Hoxd4-Hoxd13)28Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 28 | ||
Del(2Hoxd1-Hoxd13)12Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 12 | ||
Del(2Hoxd1-Hoxd13)1Ddu | 2 | 96832 | complex/cluster/region | deletion, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd9-Hoxd13)8Ddu | 2 | 31898 | chromosomal deletion | deletion, Chr 2, Denis Duboule 8 | ||
Del(2Hoxd4-Hoxd13)30Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 30 | ||
Del(2Hoxd9-Hoxd12)20Ddu | 2 | 25195 | chromosomal deletion | deletion, Chr 2, Denis Duboule 20 | ||
Del(2Hoxd4-Hoxd11)36Ddu | 2 | 49602 | chromosomal deletion | deletion, Chr 2, Denis Duboule 36 | ||
Del(2Hoxd8-Hoxd10)21Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 21 | ||
Del(2Hoxd9-Hoxd10)14Ddu | 2 | 8284 | chromosomal deletion | deletion, Chr 2, Denis Duboule 14 | ||
Del(2Hoxd1-Hoxd10)26Ddu | 2 | 73218 | chromosomal deletion | deletion, Chr 2, Denis Duboule 26 | ||
Del(2Hoxd8-Hoxd10)15Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 15 | ||
Dp(2Hoxd8-Hoxd10)1Ddu | 2 | 16009 | chromosomal duplication | duplication, Chr 2, Denis Duboule 1 | ||
Gm14396 | 2 | 1845 | + | lincRNA gene | predicted gene 14396 | |
Gm28793 | 2 | 818 | - | antisense lncRNA gene | predicted gene 28793 | |
D2Mit38.1 | 2 | 182 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38.1 | ||
D2Tfv10 | 2 | 272 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 10 | ||
D2Mit36 | 2 | 227 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 36 | ||
D2Mit38 | 2 | 190 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38 | ||
Cpgi11799 | 2 | 1842 | CpG island | CpG island 11799 | ||
Tssr18414 | 2 | 11 | + | TSS region | transcription start site region 18414 | |
Tssr18415 | 2 | 12 | + | TSS region | transcription start site region 18415 | |
Del(2Hoxd1-Hoxd9)63Ddu | 2 | 67379 | chromosomal deletion | deletion, Chr 2, Denis Duboule 63 | ||
Del(2Hoxd8-Hoxd9)18Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 18 | ||
Del(2Hoxd8-Hoxd9)22Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 22 | ||
Del(2Hoxd4-Hoxd9)40Ddu | 2 | 31397 | chromosomal deletion | deletion, Chr 2, Denis Duboule 40 | ||
Hoxd9 | 2 | 2445 | + | protein coding gene | homeobox D9 | |
Dp(2Hoxd8-Hoxd9)2Ddu | 2 | 10170 | chromosomal duplication | duplication, Chr 2, Denis Duboule 2 | ||
Tssr18416 | 2 | 5 | + | TSS region | transcription start site region 18416 | |
Tssr18417 | 2 | 13 | + | TSS region | transcription start site region 18417 | |
Tssr18418 | 2 | 15 | + | TSS region | transcription start site region 18418 | |
Tssr18419 | 2 | 12 | + | TSS region | transcription start site region 18419 | |
D2Tfv11 | 2 | 187 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 11 | ||
Gm44463 | 2 | 136 | - | miRNA gene | predicted gene, 44463 | |
Gm38462 | 2 | 9060 | - | protein coding gene | predicted gene, 38462 | |
Cpgi11800 | 2 | 2232 | CpG island | CpG island 11800 | ||
Tssr18420 | 2 | 13 | + | TSS region | transcription start site region 18420 | |
Hoxd8 | 2 | 3318 | + | protein coding gene | homeobox D8 | |
Tssr18421 | 2 | 25 | + | TSS region | transcription start site region 18421 | |
Tssr18422 | 2 | 12 | + | TSS region | transcription start site region 18422 | |
Tssr18423 | 2 | 53 | + | TSS region | transcription start site region 18423 | |
Tssr18424 | 2 | 12 | + | TSS region | transcription start site region 18424 | |
Tssr18425 | 2 | 32 | + | TSS region | transcription start site region 18425 | |
Tssr18426 | 2 | 15 | + | TSS region | transcription start site region 18426 | |
Tssr18427 | 2 | 11 | + | TSS region | transcription start site region 18427 | |
Tssr18428 | 2 | 11 | + | TSS region | transcription start site region 18428 | |
Tssr18429 | 2 | 38 | + | TSS region | transcription start site region 18429 | |
Tssr18430 | 2 | 31 | + | TSS region | transcription start site region 18430 | |
Tssr24623 | 2 | 18 | - | TSS region | transcription start site region 24623 | |
Tssr18431 | 2 | 1 | + | TSS region | transcription start site region 18431 | |
Hoxd3os1 | 2 | 6086 | - | antisense lncRNA gene | homeobox D3, opposite strand 1 | |
Cpgi11801 | 2 | 852 | CpG island | CpG island 11801 | ||
Tssr18432 | 2 | 15 | + | TSS region | transcription start site region 18432 | |
Tssr18433 | 2 | 20 | + | TSS region | transcription start site region 18433 | |
Tssr18434 | 2 | 28 | + | TSS region | transcription start site region 18434 | |
Tssr18435 | 2 | 42 | + | TSS region | transcription start site region 18435 | |
Hoxd3 | 2 | 36278 | + | protein coding gene | homeobox D3 | |
Tssr18436 | 2 | 36 | + | TSS region | transcription start site region 18436 | |
Tssr24624 | 2 | 33 | - | TSS region | transcription start site region 24624 | |
Cpgi11802 | 2 | 241 | CpG island | CpG island 11802 | ||
Cpgi11803 | 2 | 373 | CpG island | CpG island 11803 | ||
Tssr533 | 2 | 3 | - | TSS region | transcription start site region 533 | |
Tssr24625 | 2 | 11 | - | TSS region | transcription start site region 24625 | |
Tssr534 | 2 | 5 | - | TSS region | transcription start site region 534 | |
Tssr24626 | 2 | 7 | - | TSS region | transcription start site region 24626 | |
Tssr24627 | 2 | 11 | - | TSS region | transcription start site region 24627 | |
Tssr24628 | 2 | 20 | - | TSS region | transcription start site region 24628 | |
Tssr18437 | 2 | 7 | + | TSS region | transcription start site region 18437 | |
Del(2Hoxd1-Hoxd4)56Ddu | 2 | 43164 | chromosomal deletion | deletion, Chr 2, Denis Duboule 56 | ||
Del(2Hoxd1-Hoxd4)55Ddu | 2 | 43164 | chromosomal deletion | deletion, Chr 2, Denis Duboule 55 | ||
Hoxd4 | 2 | 7182 | + | protein coding gene | homeobox D4 | |
Tssr18438 | 2 | 22 | + | TSS region | transcription start site region 18438 | |
Cpgi11804 | 2 | 337 | CpG island | CpG island 11804 | ||
Cpgi11805 | 2 | 304 | CpG island | CpG island 11805 | ||
Mir10b | 2 | 67 | + | miRNA gene | microRNA 10b | |
Gm28230 | 2 | 21190 | + | protein coding gene | predicted gene 28230 | |
Tssr18439 | 2 | 11 | + | TSS region | transcription start site region 18439 | |
Cpgi11806 | 2 | 612 | CpG island | CpG island 11806 | ||
Tssr18440 | 2 | 21 | + | TSS region | transcription start site region 18440 | |
Tssr18441 | 2 | 4 | + | TSS region | transcription start site region 18441 | |
AI448005 | 2 | 416 | unclassified gene | expressed sequence AI448005 | ||
Cpgi11807 | 2 | 879 | CpG island | CpG island 11807 | ||
Cpgi11808 | 2 | 288 | CpG island | CpG island 11808 | ||
Cpgi11809 | 2 | 601 | CpG island | CpG island 11809 | ||
Tssr535 | 2 | 39 | + | TSS region | transcription start site region 535 | |
Cpgi11810 | 2 | 426 | CpG island | CpG island 11810 | ||
Tssr18442 | 2 | 5 | + | TSS region | transcription start site region 18442 | |
Tssr18443 | 2 | 9 | + | TSS region | transcription start site region 18443 | |
Tssr18444 | 2 | 39 | + | TSS region | transcription start site region 18444 | |
Cpgi11811 | 2 | 1464 | CpG island | CpG island 11811 | ||
Haglr | 2 | 14474 | - | bidirectional promoter lncRNA gene | Hoxd antisense growth associated long non-coding RNA | |
Cpgi11812 | 2 | 963 | CpG island | CpG island 11812 | ||
Cpgi11813 | 2 | 1129 | CpG island | CpG island 11813 | ||
Gm14424 | 2 | 1060 | + | lincRNA gene | predicted gene 14424 | |
Tssr18445 | 2 | 13 | + | TSS region | transcription start site region 18445 | |
Tssr24629 | 2 | 14 | - | TSS region | transcription start site region 24629 | |
Tssr24630 | 2 | 8 | - | TSS region | transcription start site region 24630 | |
Tssr24631 | 2 | 4 | - | TSS region | transcription start site region 24631 | |
Gm14426 | 2 | 642 | + | lincRNA gene | predicted gene 14426 | |
Cpgi11814 | 2 | 1058 | CpG island | CpG island 11814 | ||
Hoxd1 | 2 | 2162 | + | protein coding gene | homeobox D1 | |
D2Tfv14 | 2 | 225 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 14 | ||
Cpgi11815 | 2 | 770 | CpG island | CpG island 11815 | ||
Tssr18446 | 2 | 56 | + | TSS region | transcription start site region 18446 | |
Mtx2 | 2 | 50936 | + | protein coding gene | metaxin 2 | |
Tssr18447 | 2 | 15 | + | TSS region | transcription start site region 18447 | |
Gm14425 | 2 | 599 | + | pseudogene | predicted gene 14425 | |
Gm14427 | 2 | 634 | - | pseudogene | predicted gene 14427 | |
Tssr536 | 2 | 1 | - | TSS region | transcription start site region 536 | |
n-R5s198 | 2 | 99 | - | rRNA gene | nuclear encoded rRNA 5S 198 | |
Gm46748 | 2 | 25320 | + | lncRNA gene | predicted gene, 46748 | |
D2Mit247 | 2 | 119 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 247 | ||
D2Mit329 | 2 | 120 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 329 | ||
Lfibq18 | 2 | 0 | QTL | liver fibrosis QTL 18 | ||
Tssr24632 | 2 | 11 | - | TSS region | transcription start site region 24632 | |
Gm13652 | 2 | 12927 | - | lincRNA gene | predicted gene 13652 | |
Tssr24633 | 2 | 9 | - | TSS region | transcription start site region 24633 | |
Tssr24634 | 2 | 14 | - | TSS region | transcription start site region 24634 | |
Tssr24635 | 2 | 13 | - | TSS region | transcription start site region 24635 | |
D2Mit418 | 2 | 173 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 418 | ||
Cpgi11816 | 2 | 849 | CpG island | CpG island 11816 | ||
Tssr24636 | 2 | 15 | - | TSS region | transcription start site region 24636 | |
2600014E21Rik | 2 | 178977 | + | lincRNA gene | RIKEN cDNA 2600014E21 gene | |
Tssr18448 | 2 | 13 | + | TSS region | transcription start site region 18448 | |
Tssr18449 | 2 | 23 | + | TSS region | transcription start site region 18449 | |
A330043C09Rik | 2 | 30540 | - | lincRNA gene | RIKEN cDNA A330043C09 gene | |
Rps6-ps4 | 2 | 749 | - | pseudogene | ribosomal protein S6, pseudogene 4 | |
Tssr24637 | 2 | 1 | - | TSS region | transcription start site region 24637 | |
Gm13653 | 2 | 482 | + | pseudogene | predicted gene 13653 | |
Tssr18450 | 2 | 17 | + | TSS region | transcription start site region 18450 | |
Gm34401 | 2 | 11246 | - | lncRNA gene | predicted gene, 34401 | |
Gm18494 | 2 | 1129 | - | pseudogene | predicted gene, 18494 | |
Gm39857 | 2 | 86429 | - | lncRNA gene | predicted gene, 39857 | |
Gm37243 | 2 | 594 | - | unclassified gene | predicted gene, 37243 | |
Gm32927 | 2 | 4817 | + | lncRNA gene | predicted gene, 32927 | |
Gm39856 | 2 | 5248 | + | lncRNA gene | predicted gene, 39856 | |
D2Mit219 | 2 | 134 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 219 | ||
Cpgi11817 | 2 | 200 | CpG island | CpG island 11817 | ||
Cpgi11818 | 2 | 487 | CpG island | CpG island 11818 | ||
9430019J16Rik | 2 | 8122 | - | lncRNA gene | RIKEN cDNA 9430019J16 gene | |
Gm13658 | 2 | 8122 | + | lincRNA gene | predicted gene 13658 | |
Gm13660 | 2 | 5822 | - | lincRNA gene | predicted gene 13660 | |
Tssr24638 | 2 | 12 | - | TSS region | transcription start site region 24638 | |
Tssr18451 | 2 | 6 | + | TSS region | transcription start site region 18451 | |
Gm39854 | 2 | 6078 | + | lncRNA gene | predicted gene, 39854 | |
D2Dcr136 | 2 | 102 | DNA segment | DNA Segment, Chr 2, Derry C. Roopenian 136 | ||
Tssr18452 | 2 | 3 | + | TSS region | transcription start site region 18452 | |
Cpgi11819 | 2 | 203 | CpG island | CpG island 11819 | ||
Cpgi11820 | 2 | 299 | CpG island | CpG island 11820 | ||
Cpgi11821 | 2 | 405 | CpG island | CpG island 11821 | ||
Gm39853 | 2 | 1967 | + | lncRNA gene | predicted gene, 39853 | |
Gm13655 | 2 | 744 | - | pseudogene | predicted gene 13655 | |
Tssr24639 | 2 | 11 | - | TSS region | transcription start site region 24639 | |
Tssr24640 | 2 | 13 | - | TSS region | transcription start site region 24640 | |
Tssr24641 | 2 | 14 | - | TSS region | transcription start site region 24641 | |
Tssr24642 | 2 | 11 | - | TSS region | transcription start site region 24642 | |
Tssr18453 | 2 | 32 | + | TSS region | transcription start site region 18453 | |
Tssr18454 | 2 | 31 | + | TSS region | transcription start site region 18454 | |
Gm39858 | 2 | 360 | + | lncRNA gene | predicted gene, 39858 | |
Tssr18455 | 2 | 11 | + | TSS region | transcription start site region 18455 | |
Tssr18456 | 2 | 4 | + | TSS region | transcription start site region 18456 | |
Gm39859 | 2 | 8009 | - | lncRNA gene | predicted gene, 39859 | |
Cpgi11822 | 2 | 1505 | CpG island | CpG island 11822 | ||
Tssr24643 | 2 | 73 | - | TSS region | transcription start site region 24643 | |
Tssr18457 | 2 | 35 | + | TSS region | transcription start site region 18457 | |
Tssr18458 | 2 | 16 | + | TSS region | transcription start site region 18458 | |
Gm24574 | 2 | 73 | + | miRNA gene | predicted gene, 24574 | |
Tssr18459 | 2 | 13 | + | TSS region | transcription start site region 18459 | |
Hnrnpa3 | 2 | 10146 | + | protein coding gene | heterogeneous nuclear ribonucleoprotein A3 | |
Tssr24644 | 2 | 42 | - | TSS region | transcription start site region 24644 | |
Nfe2l2 | 2 | 29128 | - | protein coding gene | nuclear factor, erythroid derived 2, like 2 | |
Tssr24645 | 2 | 34 | - | TSS region | transcription start site region 24645 | |
Tssr24646 | 2 | 12 | - | TSS region | transcription start site region 24646 | |
Tssr24647 | 2 | 25 | - | TSS region | transcription start site region 24647 | |
Tssr24648 | 2 | 17 | - | TSS region | transcription start site region 24648 | |
Tssr24649 | 2 | 15 | - | TSS region | transcription start site region 24649 | |
Tssr24650 | 2 | 13 | - | TSS region | transcription start site region 24650 | |
Tssr24651 | 2 | 21 | - | TSS region | transcription start site region 24651 | |
Tssr18460 | 2 | 12 | + | TSS region | transcription start site region 18460 | |
Tssr24652 | 2 | 19 | - | TSS region | transcription start site region 24652 | |
Gm24996 | 2 | 98 | - | snRNA gene | predicted gene, 24996 |