Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74685973-74745976

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
Del(2Hoxd10-Hoxd13)7Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 7
Del(2Hoxd9-Hoxd13)8Ddu 2 74668310 to 74700208 31898 chromosomal deletion deletion, Chr 2, Denis Duboule 8
Del(2Hoxd8-Hoxd13)9Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 9
Del(2Hoxd8-Hoxd13)11Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 11
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd11-Hoxd13)2Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 1
Del(2Hoxd11-Hoxd13)29Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 29
Del(2Hoxd11-Hoxd13)27Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 27
Del(2Hoxd11-Hoxd13)16Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 16
Del(2Hoxd10-Hoxd13)10Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 10
Del(2Hoxd10-Hoxd13)38Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 38
Dp(2Hoxd11-Hoxd13)4Ddu 2 74668310 to 74687016 18706 chromosomal duplication duplication, Chr 2, Denis Duboule 4
Dp(2Hoxd11-Hoxd12)5Ddu 2 74675013 to 74687016 12003 chromosomal duplication duplication, Chr 2, Denis Duboule 5
Del(2Hoxd10-Hoxd12)19Ddu 2 74675013 to 74695105 20092 chromosomal deletion deletion, Chr 2, Denis Duboule 19
Del(2Hoxd9-Hoxd12)20Ddu 2 74675013 to 74700208 25195 chromosomal deletion deletion, Chr 2, Denis Duboule 20
Del(2Hoxd11-Hoxd12)34Ddu 2 74675013 to 74687016 12003 chromosomal deletion deletion, Chr 2, Denis Duboule 34
Del(2Hoxd10-Hoxd11)32Ddu 2 74679558 to 74695105 15547 chromosomal deletion deletion, Chr 2, Denis Duboule 32
Del(2Hoxd4-Hoxd11)36Ddu 2 74679558 to 74729160 49602 chromosomal deletion deletion, Chr 2, Denis Duboule 36
Hoxd11 2 74679558 to 74687016 7458 + protein coding gene homeobox D11
Gm28309 2 74683446 to 74694194 10748 + unclassified non-coding RNA gene predicted gene 28309
Tssr18405 2 74686553 to 74686557 4 + TSS region transcription start site region 18405
Cpgi11795 2 74687456 to 74688047 591 CpG island CpG island 11795
Cpgi11796 2 74691167 to 74691954 787 CpG island CpG island 11796
Tssr24622 2 74691758 to 74691779 21 - TSS region transcription start site region 24622
Tssr18406 2 74691860 to 74691869 9 + TSS region transcription start site region 18406
Tssr18407 2 74691885 to 74691896 11 + TSS region transcription start site region 18407
Tssr18408 2 74691913 to 74691940 27 + TSS region transcription start site region 18408
Hoxd10 2 74691924 to 74695105 3181 + protein coding gene homeobox D10
Dp(2Hoxd8-Hoxd10)1Ddu 2 74691924 to 74707933 16009 chromosomal duplication duplication, Chr 2, Denis Duboule 1
Del(2Hoxd8-Hoxd10)15Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 15
Del(2Hoxd9-Hoxd10)14Ddu 2 74691924 to 74700208 8284 chromosomal deletion deletion, Chr 2, Denis Duboule 14
Del(2Hoxd8-Hoxd10)21Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 21
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Tssr18409 2 74691941 to 74691963 22 + TSS region transcription start site region 18409
Tssr18410 2 74691965 to 74691976 11 + TSS region transcription start site region 18410
Tssr18411 2 74692051 to 74692074 23 + TSS region transcription start site region 18411
Cpgi11797 2 74692341 to 74692894 553 CpG island CpG island 11797
D2Mit37 2 74693773 to 74693944 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 37
Alpq2 2 74693773 to 74693944 171 QTL alcohol preference QTL 2
Tssr18412 2 74695261 to 74695279 18 + TSS region transcription start site region 18412
Tssr18413 2 74695290 to 74695312 22 + TSS region transcription start site region 18413
Gm14396 2 74695520 to 74697365 1845 + lincRNA gene predicted gene 14396
D2Mit35 2 74696304 to 74696443 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 35
Cpgi11798 2 74696669 to 74696938 269 CpG island CpG island 11798
Gm28793 2 74696768 to 74697586 818 - antisense lncRNA gene predicted gene 28793
D2Mit38.1 2 74697225 to 74697407 182 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38.1
D2Tfv10 2 74697234 to 74697506 272 DNA segment DNA segment, Chr 2, Thomas F. Vogt 10
D2Mit36 2 74697277 to 74697504 227 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 36
D2Mit38 2 74697308 to 74697498 190 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38
Cpgi11799 2 74697483 to 74699325 1842 CpG island CpG island 11799
Tssr18414 2 74697663 to 74697674 11 + TSS region transcription start site region 18414
Tssr18415 2 74697739 to 74697751 12 + TSS region transcription start site region 18415
Hoxd9 2 74697763 to 74700208 2445 + protein coding gene homeobox D9
Del(2Hoxd8-Hoxd9)18Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 18
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Del(2Hoxd4-Hoxd9)40Ddu 2 74697763 to 74729160 31397 chromosomal deletion deletion, Chr 2, Denis Duboule 40
Del(2Hoxd8-Hoxd9)22Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 22
Dp(2Hoxd8-Hoxd9)2Ddu 2 74697763 to 74707933 10170 chromosomal duplication duplication, Chr 2, Denis Duboule 2
Tssr18416 2 74697946 to 74697951 5 + TSS region transcription start site region 18416
Tssr18417 2 74697969 to 74697982 13 + TSS region transcription start site region 18417
Tssr18418 2 74697993 to 74698008 15 + TSS region transcription start site region 18418
Tssr18419 2 74698014 to 74698026 12 + TSS region transcription start site region 18419
D2Tfv11 2 74699669 to 74699856 187 DNA segment DNA segment, Chr 2, Thomas F. Vogt 11
Gm44463 2 74701006 to 74701142 136 - miRNA gene predicted gene, 44463
Gm38462 2 74702998 to 74712058 9060 - protein coding gene predicted gene, 38462
Cpgi11800 2 74704006 to 74706238 2232 CpG island CpG island 11800
Tssr18420 2 74704532 to 74704545 13 + TSS region transcription start site region 18420
Hoxd8 2 74704615 to 74707933 3318 + protein coding gene homeobox D8
Tssr18421 2 74704623 to 74704648 25 + TSS region transcription start site region 18421
Tssr18422 2 74704825 to 74704837 12 + TSS region transcription start site region 18422
Tssr18423 2 74704861 to 74704914 53 + TSS region transcription start site region 18423
Tssr18424 2 74704917 to 74704929 12 + TSS region transcription start site region 18424
Tssr18425 2 74705046 to 74705078 32 + TSS region transcription start site region 18425
Tssr18426 2 74705086 to 74705101 15 + TSS region transcription start site region 18426
Tssr18427 2 74705145 to 74705156 11 + TSS region transcription start site region 18427
Tssr18428 2 74705178 to 74705189 11 + TSS region transcription start site region 18428
Tssr18429 2 74705340 to 74705378 38 + TSS region transcription start site region 18429
Tssr18430 2 74705738 to 74705769 31 + TSS region transcription start site region 18430
Tssr24623 2 74705815 to 74705833 18 - TSS region transcription start site region 24623
Tssr18431 2 74709713 to 74709714 1 + TSS region transcription start site region 18431
Hoxd3os1 2 74710044 to 74716130 6086 - antisense lncRNA gene homeobox D3, opposite strand 1
Cpgi11801 2 74711739 to 74712591 852 CpG island CpG island 11801
Tssr18432 2 74711858 to 74711873 15 + TSS region transcription start site region 18432
Tssr18433 2 74711888 to 74711908 20 + TSS region transcription start site region 18433
Tssr18434 2 74711911 to 74711939 28 + TSS region transcription start site region 18434
Tssr18435 2 74711958 to 74712000 42 + TSS region transcription start site region 18435
Hoxd3 2 74711993 to 74748271 36278 + protein coding gene homeobox D3
Tssr18436 2 74712121 to 74712157 36 + TSS region transcription start site region 18436
Tssr24624 2 74714263 to 74714296 33 - TSS region transcription start site region 24624
Cpgi11802 2 74714992 to 74715233 241 CpG island CpG island 11802
Cpgi11803 2 74715846 to 74716219 373 CpG island CpG island 11803
Tssr533 2 74715973 to 74715976 3 - TSS region transcription start site region 533
Tssr24625 2 74715989 to 74716000 11 - TSS region transcription start site region 24625
Tssr534 2 74716002 to 74716007 5 - TSS region transcription start site region 534
Tssr24626 2 74716020 to 74716027 7 - TSS region transcription start site region 24626
Tssr24627 2 74716124 to 74716135 11 - TSS region transcription start site region 24627
Tssr24628 2 74716137 to 74716157 20 - TSS region transcription start site region 24628
Tssr18437 2 74716988 to 74716995 7 + TSS region transcription start site region 18437
Hoxd4 2 74721978 to 74729160 7182 + protein coding gene homeobox D4
Del(2Hoxd1-Hoxd4)55Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 55
Del(2Hoxd1-Hoxd4)56Ddu 2 74721978 to 74765142 43164 chromosomal deletion deletion, Chr 2, Denis Duboule 56
Tssr18438 2 74722052 to 74722074 22 + TSS region transcription start site region 18438
Cpgi11804 2 74723306 to 74723643 337 CpG island CpG island 11804
Cpgi11805 2 74725320 to 74725624 304 CpG island CpG island 11805
Mir10b 2 74726070 to 74726137 67 + miRNA gene microRNA 10b
Gm28230 2 74726728 to 74747918 21190 + protein coding gene predicted gene 28230
Tssr18439 2 74727190 to 74727201 11 + TSS region transcription start site region 18439
Cpgi11806 2 74727226 to 74727838 612 CpG island CpG island 11806
Tssr18440 2 74727249 to 74727270 21 + TSS region transcription start site region 18440
Tssr18441 2 74729829 to 74729833 4 + TSS region transcription start site region 18441
AI448005 2 74731335 to 74731751 416 unclassified gene expressed sequence AI448005
Cpgi11807 2 74732635 to 74733514 879 CpG island CpG island 11807
Cpgi11808 2 74735412 to 74735700 288 CpG island CpG island 11808
Cpgi11809 2 74736164 to 74736765 601 CpG island CpG island 11809
Tssr535 2 74736396 to 74736435 39 + TSS region transcription start site region 535
Cpgi11810 2 74740289 to 74740715 426 CpG island CpG island 11810
Tssr18442 2 74745676 to 74745681 5 + TSS region transcription start site region 18442
Tssr18443 2 74745684 to 74745693 9 + TSS region transcription start site region 18443
Tssr18444 2 74745719 to 74745758 39 + TSS region transcription start site region 18444
Parms1 2 114293051 to 74693773 -39599278 QTL patched associated RMS 1
Sluc31 2 129371085 to 74693773 -54677312 QTL susceptibility to lung cancer 31