Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:74681885-74701896

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
Del(2Hoxd11-Hoxd13)2Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 1
Del(2Hoxd11-Hoxd13)29Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 29
Del(2Hoxd10-Hoxd13)10Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 10
Del(2Hoxd11-Hoxd13)16Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 16
Dp(2Hoxd11-Hoxd13)4Ddu 2 74668310 to 74687016 18706 chromosomal duplication duplication, Chr 2, Denis Duboule 4
Del(2Hoxd11-Hoxd13)27Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 27
Del(2Hoxd10-Hoxd13)7Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 7
Del(2Hoxd10-Hoxd13)38Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 38
Del(2Hoxd9-Hoxd13)8Ddu 2 74668310 to 74700208 31898 chromosomal deletion deletion, Chr 2, Denis Duboule 8
Del(2Hoxd9-Hoxd12)20Ddu 2 74675013 to 74700208 25195 chromosomal deletion deletion, Chr 2, Denis Duboule 20
Dp(2Hoxd11-Hoxd12)5Ddu 2 74675013 to 74687016 12003 chromosomal duplication duplication, Chr 2, Denis Duboule 5
Del(2Hoxd11-Hoxd12)34Ddu 2 74675013 to 74687016 12003 chromosomal deletion deletion, Chr 2, Denis Duboule 34
Del(2Hoxd10-Hoxd12)19Ddu 2 74675013 to 74695105 20092 chromosomal deletion deletion, Chr 2, Denis Duboule 19
Del(2Hoxd10-Hoxd11)32Ddu 2 74679558 to 74695105 15547 chromosomal deletion deletion, Chr 2, Denis Duboule 32
Hoxd11 2 74679558 to 74687016 7458 + protein coding gene homeobox D11
Cpgi11794 2 74681563 to 74683961 2398 CpG island CpG island 11794
Tssr18399 2 74681991 to 74682007 16 + TSS region transcription start site region 18399
Tssr18400 2 74682018 to 74682030 12 + TSS region transcription start site region 18400
Tssr18401 2 74682286 to 74682326 40 + TSS region transcription start site region 18401
Gm28309 2 74683446 to 74694194 10748 + unclassified non-coding RNA gene predicted gene 28309
Tssr18402 2 74683459 to 74683468 9 + TSS region transcription start site region 18402
Tssr18403 2 74683833 to 74683844 11 + TSS region transcription start site region 18403
Tssr18404 2 74683893 to 74683901 8 + TSS region transcription start site region 18404
D2Mit271 2 74684815 to 74684955 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 271
D2Tfv9 2 74684828 to 74684972 144 DNA segment DNA segment, Chr 2, Thomas F. Vogt 9
Tssr18405 2 74686553 to 74686557 4 + TSS region transcription start site region 18405
Cpgi11795 2 74687456 to 74688047 591 CpG island CpG island 11795
Cpgi11796 2 74691167 to 74691954 787 CpG island CpG island 11796
Tssr24622 2 74691758 to 74691779 21 - TSS region transcription start site region 24622
Tssr18406 2 74691860 to 74691869 9 + TSS region transcription start site region 18406
Tssr18407 2 74691885 to 74691896 11 + TSS region transcription start site region 18407
Tssr18408 2 74691913 to 74691940 27 + TSS region transcription start site region 18408
Del(2Hoxd8-Hoxd10)15Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 15
Dp(2Hoxd8-Hoxd10)1Ddu 2 74691924 to 74707933 16009 chromosomal duplication duplication, Chr 2, Denis Duboule 1
Del(2Hoxd9-Hoxd10)14Ddu 2 74691924 to 74700208 8284 chromosomal deletion deletion, Chr 2, Denis Duboule 14
Del(2Hoxd1-Hoxd10)26Ddu 2 74691924 to 74765142 73218 chromosomal deletion deletion, Chr 2, Denis Duboule 26
Del(2Hoxd8-Hoxd10)21Ddu 2 74691924 to 74707933 16009 chromosomal deletion deletion, Chr 2, Denis Duboule 21
Hoxd10 2 74691924 to 74695105 3181 + protein coding gene homeobox D10
Tssr18409 2 74691941 to 74691963 22 + TSS region transcription start site region 18409
Tssr18410 2 74691965 to 74691976 11 + TSS region transcription start site region 18410
Tssr18411 2 74692051 to 74692074 23 + TSS region transcription start site region 18411
Cpgi11797 2 74692341 to 74692894 553 CpG island CpG island 11797
Alpq2 2 74693773 to 74693944 171 QTL alcohol preference QTL 2
D2Mit37 2 74693773 to 74693944 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 37
Tssr18412 2 74695261 to 74695279 18 + TSS region transcription start site region 18412
Tssr18413 2 74695290 to 74695312 22 + TSS region transcription start site region 18413
Gm14396 2 74695520 to 74697365 1845 + lincRNA gene predicted gene 14396
D2Mit35 2 74696304 to 74696443 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 35
Cpgi11798 2 74696669 to 74696938 269 CpG island CpG island 11798
Gm28793 2 74696768 to 74697586 818 - antisense lncRNA gene predicted gene 28793
D2Mit38.1 2 74697225 to 74697407 182 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38.1
D2Tfv10 2 74697234 to 74697506 272 DNA segment DNA segment, Chr 2, Thomas F. Vogt 10
D2Mit36 2 74697277 to 74697504 227 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 36
D2Mit38 2 74697308 to 74697498 190 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 38
Cpgi11799 2 74697483 to 74699325 1842 CpG island CpG island 11799
Tssr18414 2 74697663 to 74697674 11 + TSS region transcription start site region 18414
Tssr18415 2 74697739 to 74697751 12 + TSS region transcription start site region 18415
Del(2Hoxd4-Hoxd9)40Ddu 2 74697763 to 74729160 31397 chromosomal deletion deletion, Chr 2, Denis Duboule 40
Del(2Hoxd8-Hoxd9)18Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 18
Del(2Hoxd8-Hoxd9)22Ddu 2 74697763 to 74707933 10170 chromosomal deletion deletion, Chr 2, Denis Duboule 22
Dp(2Hoxd8-Hoxd9)2Ddu 2 74697763 to 74707933 10170 chromosomal duplication duplication, Chr 2, Denis Duboule 2
Del(2Hoxd1-Hoxd9)63Ddu 2 74697763 to 74765142 67379 chromosomal deletion deletion, Chr 2, Denis Duboule 63
Hoxd9 2 74697763 to 74700208 2445 + protein coding gene homeobox D9
Tssr18416 2 74697946 to 74697951 5 + TSS region transcription start site region 18416
Tssr18417 2 74697969 to 74697982 13 + TSS region transcription start site region 18417
Tssr18418 2 74697993 to 74698008 15 + TSS region transcription start site region 18418
Tssr18419 2 74698014 to 74698026 12 + TSS region transcription start site region 18419
D2Tfv11 2 74699669 to 74699856 187 DNA segment DNA segment, Chr 2, Thomas F. Vogt 11
Gm44463 2 74701006 to 74701142 136 - miRNA gene predicted gene, 44463
Parms1 2 114293051 to 74693773 -39599278 QTL patched associated RMS 1
Sluc31 2 129371085 to 74693773 -54677312 QTL susceptibility to lung cancer 31