Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:73806509-74669557

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
Tssr24587 2 73808980 to 73809012 32 - TSS region transcription start site region 24587
Gm13640 2 73809162 to 73809425 263 + pseudogene predicted gene 13640
Dp(2Lnp-Atf2)60Ddu 2 73816509 to 74579435 762926 chromosomal duplication duplication, Chr 2, Denis Duboule 60
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Atf2 2 73816509 to 73892639 76130 - protein coding gene activating transcription factor 2
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
Gm27421 2 73827665 to 73827831 166 - unclassified non-coding RNA gene predicted gene, 27421
Tssr24588 2 73886175 to 73886179 4 - TSS region transcription start site region 24588
Cpgi11779 2 73891828 to 73893251 1423 CpG island CpG island 11779
Tssr24589 2 73892157 to 73892167 10 - TSS region transcription start site region 24589
Tssr24590 2 73892177 to 73892188 11 - TSS region transcription start site region 24590
Tssr24591 2 73892191 to 73892211 20 - TSS region transcription start site region 24591
Tssr24592 2 73892214 to 73892240 26 - TSS region transcription start site region 24592
Tssr24593 2 73892298 to 73892368 70 - TSS region transcription start site region 24593
Tssr24594 2 73892539 to 73892555 16 - TSS region transcription start site region 24594
Tssr24595 2 73892562 to 73892573 11 - TSS region transcription start site region 24595
Tssr24596 2 73892588 to 73892616 28 - TSS region transcription start site region 24596
Tssr24597 2 73892619 to 73892635 16 - TSS region transcription start site region 24597
Gm10822 2 73892996 to 73900850 7854 + lincRNA gene predicted gene 10822
Atp5g3 2 73908447 to 73911326 2879 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
Cpgi11780 2 73910553 to 73911597 1044 CpG island CpG island 11780
Tssr24598 2 73910973 to 73910985 12 - TSS region transcription start site region 24598
Tssr24599 2 73911007 to 73911056 49 - TSS region transcription start site region 24599
Tssr24600 2 73911285 to 73911308 23 - TSS region transcription start site region 24600
Tssr24601 2 73911311 to 73911316 5 - TSS region transcription start site region 24601
Tssr24602 2 73911323 to 73911328 5 - TSS region transcription start site region 24602
Tssr24603 2 73912432 to 73912466 34 - TSS region transcription start site region 24603
Gm39851 2 73939149 to 73949153 10004 + lncRNA gene predicted gene, 39851
Gm13668 2 73959669 to 73960669 1000 - pseudogene predicted gene 13668
Gm38603 2 73962681 to 73968000 5319 + lncRNA gene predicted gene, 38603
Gm31472 2 73975891 to 73978427 2536 - lncRNA gene predicted gene, 31472
D2Mit10 2 74072522 to 74072671 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 10
A630050E04Rik 2 74100924 to 74102342 1418 - lincRNA gene RIKEN cDNA A630050E04 gene
Gm28640 2 74130181 to 74130730 549 + lincRNA gene predicted gene 28640
Tssr18386 2 74133501 to 74133526 25 + TSS region transcription start site region 18386
Gm13667 2 74135757 to 74150834 15077 + lincRNA gene predicted gene 13667
Cpgi11781 2 74168362 to 74168603 241 CpG island CpG island 11781
Gm31534 2 74203081 to 74210900 7819 + lncRNA gene predicted gene, 31534
Tssr18387 2 74272510 to 74272515 5 + TSS region transcription start site region 18387
Gm31731 2 74286272 to 74288514 2242 + lncRNA gene predicted gene, 31731
4930441J16Rik 2 74298940 to 74307717 8777 - lincRNA gene RIKEN cDNA 4930441J16 gene
D2Tfv5 2 74300612 to 74300743 131 DNA segment DNA segment, Chr 2, Thomas F. Vogt 5
Tssr24604 2 74307695 to 74307725 30 - TSS region transcription start site region 24604
D2Tfv6 2 74381391 to 74381510 119 DNA segment DNA segment, Chr 2, Thomas F. Vogt 6
Tssr24605 2 74518958 to 74518986 28 - TSS region transcription start site region 24605
Lnpk 2 74520291 to 74579435 59144 - protein coding gene lunapark, ER junction formation factor
Tssr24606 2 74521974 to 74521985 11 - TSS region transcription start site region 24606
Tssr24607 2 74544534 to 74544555 21 - TSS region transcription start site region 24607
Tssr24608 2 74562797 to 74562803 6 - TSS region transcription start site region 24608
Tssr24609 2 74576594 to 74576607 13 - TSS region transcription start site region 24609
Cpgi11782 2 74578118 to 74579289 1171 CpG island CpG island 11782
Tssr24610 2 74578875 to 74578954 79 - TSS region transcription start site region 24610
Tssr18388 2 74579039 to 74579048 9 + TSS region transcription start site region 18388
4930445N08Rik 2 74579076 to 74584544 5468 + antisense lncRNA gene RIKEN cDNA 4930445N08 gene
Tssr24611 2 74579407 to 74579417 10 - TSS region transcription start site region 24611
Tssr24612 2 74579420 to 74579450 30 - TSS region transcription start site region 24612
Tssr24613 2 74579461 to 74579464 3 - TSS region transcription start site region 24613
Mrpl23-ps1 2 74591372 to 74591915 543 - pseudogene mitichondrial ribosomal protein L23, pseudogene 1
Tssr24614 2 74591891 to 74591908 17 - TSS region transcription start site region 24614
Gm39852 2 74598145 to 74606232 8087 - lncRNA gene predicted gene, 39852
Tssr24615 2 74602130 to 74602152 22 - TSS region transcription start site region 24615
Tssr24616 2 74606162 to 74606171 9 - TSS region transcription start site region 24616
Gm22975 2 74624642 to 74624748 106 + snRNA gene predicted gene, 22975
Gm13672 2 74631840 to 74632298 458 + pseudogene predicted gene 13672
Evx2 2 74652991 to 74659557 6566 - protein coding gene even-skipped homeobox 2
Cpgi11783 2 74654936 to 74656714 1778 CpG island CpG island 11783
Cpgi11784 2 74657418 to 74658188 770 CpG island CpG island 11784
D2Tfv7 2 74657541 to 74657770 229 DNA segment DNA segment, Chr 2, Thomas F. Vogt 7
Cpgi11785 2 74658543 to 74659769 1226 CpG island CpG island 11785
Tssr24617 2 74659789 to 74659802 13 - TSS region transcription start site region 24617
Tssr24618 2 74659835 to 74659846 11 - TSS region transcription start site region 24618
Tssr24619 2 74659852 to 74659865 13 - TSS region transcription start site region 24619
Cpgi11786 2 74660916 to 74661239 323 CpG island CpG island 11786
Tssr24620 2 74661194 to 74661201 7 - TSS region transcription start site region 24620
Tssr24621 2 74661243 to 74661252 9 - TSS region transcription start site region 24621
Gm31790 2 74661551 to 74666891 5340 + lncRNA gene predicted gene, 31790
Cpgi11787 2 74661774 to 74662033 259 CpG island CpG island 11787
Cpgi11788 2 74667222 to 74667453 231 CpG island CpG island 11788
Tssr18389 2 74667267 to 74667273 6 + TSS region transcription start site region 18389
Cpgi11789 2 74667627 to 74669086 1459 CpG island CpG island 11789
Tssr18390 2 74668207 to 74668229 22 + TSS region transcription start site region 18390
Del(2Hoxd1-Hoxd13)12Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 12
Del(2Hoxd12-Hoxd13)6Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 6
Del(2Hoxd12-Hoxd13)5Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 5
Del(2Hoxd12-Hoxd13)41Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 41
Del(2Hoxd12-Hoxd13)35Ddu 2 74668310 to 74677705 9395 chromosomal deletion deletion, Chr 2, Denis Duboule 35
Del(2Hoxd11-Hoxd13)2Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 1
Del(2Hoxd11-Hoxd13)29Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 29
Del(2Hoxd11-Hoxd13)27Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 27
Del(2Hoxd11-Hoxd13)16Ddu 2 74668310 to 74687016 18706 chromosomal deletion deletion, Chr 2, Denis Duboule 16
Del(2Hoxd10-Hoxd13)7Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 7
Del(2Hoxd10-Hoxd13)38Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 38
Del(2Hoxd10-Hoxd13)10Ddu 2 74668310 to 74695105 26795 chromosomal deletion deletion, Chr 2, Denis Duboule 10
Del(2Hoxd1-Hoxd13)1Ddu 2 74668310 to 74765142 96832 complex/cluster/region deletion, Chr 2, Denis Duboule 1
Del(2Hoxd1-Hoxd13)54Ddu 2 74668310 to 74765142 96832 chromosomal deletion deletion, Chr 2, Denis Duboule 54
Del(2Hoxd4-Hoxd13)28Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 28
Del(2Hoxd4-Hoxd13)30Ddu 2 74668310 to 74729160 60850 chromosomal deletion deletion, Chr 2, Denis Duboule 30
Del(2Hoxd8-Hoxd13)11Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 11
Del(2Hoxd8-Hoxd13)9Ddu 2 74668310 to 74707933 39623 chromosomal deletion deletion, Chr 2, Denis Duboule 9
Del(2Hoxd9-Hoxd13)8Ddu 2 74668310 to 74700208 31898 chromosomal deletion deletion, Chr 2, Denis Duboule 8
Hoxd13 2 74668310 to 74671599 3289 + protein coding gene homeobox D13
Dp(2Hoxd11-Hoxd13)4Ddu 2 74668310 to 74687016 18706 chromosomal duplication duplication, Chr 2, Denis Duboule 4