Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Aips2 | 2 | 9762815 | QTL | autoimmune pancreatitis severity 2 | ||
In(2Atf2-Itga6)58Ddu | 2 | 2105753 | chromosomal inversion | inversion, Chr 2, Denis Duboule 58 | ||
In(2Lnp-Itga6)47Ddu | 2 | 2792549 | chromosomal inversion | inversion, Chr 2, Denis Duboule 47 | ||
In(2Itga6-Evx2)44Ddu | 2 | 2872671 | chromosomal inversion | inversion, Chr 2, Denis Duboule 44 | ||
In(2Hoxd11;Itga6)1Ddu | 2 | 2900130 | chromosomal inversion | inversion, Chr 2, Denis Duboule 1 | ||
Chrna1 | 2 | 17057 | - | protein coding gene | cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) | |
Tssr24572 | 2 | 65 | - | TSS region | transcription start site region 24572 | |
Tssr18384 | 2 | 56 | + | TSS region | transcription start site region 18384 | |
Chrna1os | 2 | 4358 | + | antisense lncRNA gene | cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand | |
Chn1os3 | 2 | 19486 | + | antisense lncRNA gene | chimerin 1, opposite strand 3 | |
Chn1 | 2 | 164686 | - | protein coding gene | chimerin 1 | |
Tssr24573 | 2 | 33 | - | TSS region | transcription start site region 24573 | |
Tssr24574 | 2 | 13 | - | TSS region | transcription start site region 24574 | |
Tssr24575 | 2 | 2 | - | TSS region | transcription start site region 24575 | |
Chn1os1 | 2 | 1993 | + | antisense lncRNA gene | chimerin 1, opposite strand 1 | |
Tssr24576 | 2 | 12 | - | TSS region | transcription start site region 24576 | |
Tssr24577 | 2 | 14 | - | TSS region | transcription start site region 24577 | |
Tssr24578 | 2 | 70 | - | TSS region | transcription start site region 24578 | |
Tssr24579 | 2 | 14 | - | TSS region | transcription start site region 24579 | |
Tssr24580 | 2 | 46 | - | TSS region | transcription start site region 24580 | |
Tssr24581 | 2 | 9 | - | TSS region | transcription start site region 24581 | |
Tssr531 | 2 | 5 | - | TSS region | transcription start site region 531 | |
Tssr24582 | 2 | 31 | - | TSS region | transcription start site region 24582 | |
Tssr18385 | 2 | 8 | + | TSS region | transcription start site region 18385 | |
Cpgi11778 | 2 | 1301 | CpG island | CpG island 11778 | ||
Tssr24583 | 2 | 81 | - | TSS region | transcription start site region 24583 | |
Tssr24584 | 2 | 11 | - | TSS region | transcription start site region 24584 | |
Tssr24585 | 2 | 11 | - | TSS region | transcription start site region 24585 | |
Tssr24586 | 2 | 37 | - | TSS region | transcription start site region 24586 | |
Tssr24587 | 2 | 32 | - | TSS region | transcription start site region 24587 | |
Gm13640 | 2 | 263 | + | pseudogene | predicted gene 13640 | |
Dp(2Evx2-Atf2)59Ddu | 2 | 843048 | chromosomal duplication | duplication, Chr 2, Denis Duboule 59 | ||
Dp(2Lnp-Atf2)60Ddu | 2 | 762926 | chromosomal duplication | duplication, Chr 2, Denis Duboule 60 | ||
Atf2 | 2 | 76130 | - | protein coding gene | activating transcription factor 2 | |
Del(2Evx2-Atf2)53Ddu | 2 | 843048 | chromosomal deletion | deletion, Chr 2, Denis Duboule 53 | ||
Gm27421 | 2 | 166 | - | unclassified non-coding RNA gene | predicted gene, 27421 | |
Tssr24588 | 2 | 4 | - | TSS region | transcription start site region 24588 | |
Cpgi11779 | 2 | 1423 | CpG island | CpG island 11779 | ||
Tssr24589 | 2 | 10 | - | TSS region | transcription start site region 24589 | |
Tssr24590 | 2 | 11 | - | TSS region | transcription start site region 24590 | |
Tssr24591 | 2 | 20 | - | TSS region | transcription start site region 24591 | |
Tssr24592 | 2 | 26 | - | TSS region | transcription start site region 24592 | |
Tssr24593 | 2 | 70 | - | TSS region | transcription start site region 24593 | |
Tssr24594 | 2 | 16 | - | TSS region | transcription start site region 24594 | |
Tssr24595 | 2 | 11 | - | TSS region | transcription start site region 24595 | |
Tssr24596 | 2 | 28 | - | TSS region | transcription start site region 24596 | |
Tssr24597 | 2 | 16 | - | TSS region | transcription start site region 24597 | |
Gm10822 | 2 | 7854 | + | lincRNA gene | predicted gene 10822 | |
Atp5g3 | 2 | 2879 | - | protein coding gene | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) | |
Cpgi11780 | 2 | 1044 | CpG island | CpG island 11780 | ||
Tssr24598 | 2 | 12 | - | TSS region | transcription start site region 24598 | |
Tssr24599 | 2 | 49 | - | TSS region | transcription start site region 24599 | |
Tssr24600 | 2 | 23 | - | TSS region | transcription start site region 24600 | |
Tssr24601 | 2 | 5 | - | TSS region | transcription start site region 24601 | |
Tssr24602 | 2 | 5 | - | TSS region | transcription start site region 24602 | |
Tssr24603 | 2 | 34 | - | TSS region | transcription start site region 24603 | |
Gm39851 | 2 | 10004 | + | lncRNA gene | predicted gene, 39851 | |
Gm13668 | 2 | 1000 | - | pseudogene | predicted gene 13668 | |
Gm38603 | 2 | 5319 | + | lncRNA gene | predicted gene, 38603 | |
Gm31472 | 2 | 2536 | - | lncRNA gene | predicted gene, 31472 | |
D2Mit10 | 2 | 149 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 10 | ||
A630050E04Rik | 2 | 1418 | - | lincRNA gene | RIKEN cDNA A630050E04 gene | |
Gm28640 | 2 | 549 | + | lincRNA gene | predicted gene 28640 | |
Tssr18386 | 2 | 25 | + | TSS region | transcription start site region 18386 | |
Gm13667 | 2 | 15077 | + | lincRNA gene | predicted gene 13667 | |
Cpgi11781 | 2 | 241 | CpG island | CpG island 11781 | ||
Gm31534 | 2 | 7819 | + | lncRNA gene | predicted gene, 31534 | |
Tssr18387 | 2 | 5 | + | TSS region | transcription start site region 18387 | |
Gm31731 | 2 | 2242 | + | lncRNA gene | predicted gene, 31731 | |
4930441J16Rik | 2 | 8777 | - | lincRNA gene | RIKEN cDNA 4930441J16 gene | |
D2Tfv5 | 2 | 131 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 5 | ||
Tssr24604 | 2 | 30 | - | TSS region | transcription start site region 24604 | |
D2Tfv6 | 2 | 119 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 6 | ||
Tssr24605 | 2 | 28 | - | TSS region | transcription start site region 24605 | |
Lnpk | 2 | 59144 | - | protein coding gene | lunapark, ER junction formation factor | |
Tssr24606 | 2 | 11 | - | TSS region | transcription start site region 24606 | |
Tssr24607 | 2 | 21 | - | TSS region | transcription start site region 24607 | |
Tssr24608 | 2 | 6 | - | TSS region | transcription start site region 24608 | |
Tssr24609 | 2 | 13 | - | TSS region | transcription start site region 24609 | |
Cpgi11782 | 2 | 1171 | CpG island | CpG island 11782 | ||
Tssr24610 | 2 | 79 | - | TSS region | transcription start site region 24610 | |
Tssr18388 | 2 | 9 | + | TSS region | transcription start site region 18388 | |
4930445N08Rik | 2 | 5468 | + | antisense lncRNA gene | RIKEN cDNA 4930445N08 gene | |
Tssr24611 | 2 | 10 | - | TSS region | transcription start site region 24611 | |
Tssr24612 | 2 | 30 | - | TSS region | transcription start site region 24612 | |
Tssr24613 | 2 | 3 | - | TSS region | transcription start site region 24613 | |
Mrpl23-ps1 | 2 | 543 | - | pseudogene | mitichondrial ribosomal protein L23, pseudogene 1 | |
Tssr24614 | 2 | 17 | - | TSS region | transcription start site region 24614 | |
Gm39852 | 2 | 8087 | - | lncRNA gene | predicted gene, 39852 | |
Tssr24615 | 2 | 22 | - | TSS region | transcription start site region 24615 | |
Tssr24616 | 2 | 9 | - | TSS region | transcription start site region 24616 | |
Gm22975 | 2 | 106 | + | snRNA gene | predicted gene, 22975 | |
Gm13672 | 2 | 458 | + | pseudogene | predicted gene 13672 | |
Evx2 | 2 | 6566 | - | protein coding gene | even-skipped homeobox 2 | |
Cpgi11783 | 2 | 1778 | CpG island | CpG island 11783 | ||
Cpgi11784 | 2 | 770 | CpG island | CpG island 11784 | ||
D2Tfv7 | 2 | 229 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 7 | ||
Cpgi11785 | 2 | 1226 | CpG island | CpG island 11785 | ||
Tssr24617 | 2 | 13 | - | TSS region | transcription start site region 24617 | |
Tssr24618 | 2 | 11 | - | TSS region | transcription start site region 24618 | |
Tssr24619 | 2 | 13 | - | TSS region | transcription start site region 24619 | |
Cpgi11786 | 2 | 323 | CpG island | CpG island 11786 | ||
Tssr24620 | 2 | 7 | - | TSS region | transcription start site region 24620 | |
Tssr24621 | 2 | 9 | - | TSS region | transcription start site region 24621 | |
Gm31790 | 2 | 5340 | + | lncRNA gene | predicted gene, 31790 | |
Cpgi11787 | 2 | 259 | CpG island | CpG island 11787 | ||
Cpgi11788 | 2 | 231 | CpG island | CpG island 11788 | ||
Tssr18389 | 2 | 6 | + | TSS region | transcription start site region 18389 | |
Cpgi11789 | 2 | 1459 | CpG island | CpG island 11789 | ||
Tssr18390 | 2 | 22 | + | TSS region | transcription start site region 18390 | |
Dp(2Hoxd11-Hoxd13)4Ddu | 2 | 18706 | chromosomal duplication | duplication, Chr 2, Denis Duboule 4 | ||
Hoxd13 | 2 | 3289 | + | protein coding gene | homeobox D13 | |
Del(2Hoxd1-Hoxd13)54Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 54 | ||
Del(2Hoxd4-Hoxd13)28Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 28 | ||
Del(2Hoxd9-Hoxd13)8Ddu | 2 | 31898 | chromosomal deletion | deletion, Chr 2, Denis Duboule 8 | ||
Del(2Hoxd8-Hoxd13)9Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 9 | ||
Del(2Hoxd8-Hoxd13)11Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 11 | ||
Del(2Hoxd4-Hoxd13)30Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 30 | ||
Del(2Hoxd1-Hoxd13)12Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 12 | ||
Del(2Hoxd1-Hoxd13)1Ddu | 2 | 96832 | complex/cluster/region | deletion, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd10-Hoxd13)10Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 10 | ||
Del(2Hoxd10-Hoxd13)38Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 38 | ||
Del(2Hoxd10-Hoxd13)7Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 7 | ||
Del(2Hoxd11-Hoxd13)16Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 16 | ||
Del(2Hoxd11-Hoxd13)27Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 27 | ||
Del(2Hoxd11-Hoxd13)29Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 29 | ||
Del(2Hoxd11-Hoxd13)2Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd12-Hoxd13)35Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 35 | ||
Del(2Hoxd12-Hoxd13)41Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 41 | ||
Del(2Hoxd12-Hoxd13)5Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 5 | ||
Del(2Hoxd12-Hoxd13)6Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 6 | ||
Cpgi11790 | 2 | 619 | CpG island | CpG island 11790 | ||
Cpgi11791 | 2 | 392 | CpG island | CpG island 11791 | ||
Tssr532 | 2 | 24 | + | TSS region | transcription start site region 532 | |
Tssr18391 | 2 | 3 | + | TSS region | transcription start site region 18391 | |
Tssr18392 | 2 | 25 | + | TSS region | transcription start site region 18392 | |
Dp(2Hoxd11-Hoxd12)5Ddu | 2 | 12003 | chromosomal duplication | duplication, Chr 2, Denis Duboule 5 | ||
Del(2Hoxd9-Hoxd12)20Ddu | 2 | 25195 | chromosomal deletion | deletion, Chr 2, Denis Duboule 20 | ||
Del(2Hoxd10-Hoxd12)19Ddu | 2 | 20092 | chromosomal deletion | deletion, Chr 2, Denis Duboule 19 | ||
Del(2Hoxd11-Hoxd12)34Ddu | 2 | 12003 | chromosomal deletion | deletion, Chr 2, Denis Duboule 34 | ||
Hoxd12 | 2 | 2692 | + | protein coding gene | homeobox D12 | |
Tssr18393 | 2 | 18 | + | TSS region | transcription start site region 18393 | |
Cpgi11792 | 2 | 968 | CpG island | CpG island 11792 | ||
Tssr18394 | 2 | 10 | + | TSS region | transcription start site region 18394 | |
Tssr18395 | 2 | 12 | + | TSS region | transcription start site region 18395 | |
Hoxd11 | 2 | 7458 | + | protein coding gene | homeobox D11 | |
Del(2Hoxd4-Hoxd11)36Ddu | 2 | 49602 | chromosomal deletion | deletion, Chr 2, Denis Duboule 36 | ||
Del(2Hoxd10-Hoxd11)32Ddu | 2 | 15547 | chromosomal deletion | deletion, Chr 2, Denis Duboule 32 | ||
Cpgi11793 | 2 | 1186 | CpG island | CpG island 11793 | ||
Tssr18396 | 2 | 13 | + | TSS region | transcription start site region 18396 | |
Tssr18397 | 2 | 16 | + | TSS region | transcription start site region 18397 | |
Tssr18398 | 2 | 31 | + | TSS region | transcription start site region 18398 | |
Cpgi11794 | 2 | 2398 | CpG island | CpG island 11794 | ||
Tssr18399 | 2 | 16 | + | TSS region | transcription start site region 18399 | |
Tssr18400 | 2 | 12 | + | TSS region | transcription start site region 18400 | |
Tssr18401 | 2 | 40 | + | TSS region | transcription start site region 18401 | |
Gm28309 | 2 | 10748 | + | unclassified non-coding RNA gene | predicted gene 28309 | |
Tssr18402 | 2 | 9 | + | TSS region | transcription start site region 18402 | |
Tssr18403 | 2 | 11 | + | TSS region | transcription start site region 18403 | |
Tssr18404 | 2 | 8 | + | TSS region | transcription start site region 18404 | |
D2Mit271 | 2 | 140 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 271 | ||
D2Tfv9 | 2 | 144 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 9 | ||
Tssr18405 | 2 | 4 | + | TSS region | transcription start site region 18405 | |
Cpgi11795 | 2 | 591 | CpG island | CpG island 11795 | ||
Cpgi11796 | 2 | 787 | CpG island | CpG island 11796 | ||
Tssr24622 | 2 | 21 | - | TSS region | transcription start site region 24622 | |
Tssr18406 | 2 | 9 | + | TSS region | transcription start site region 18406 | |
Tssr18407 | 2 | 11 | + | TSS region | transcription start site region 18407 | |
Tssr18408 | 2 | 27 | + | TSS region | transcription start site region 18408 | |
Dp(2Hoxd8-Hoxd10)1Ddu | 2 | 16009 | chromosomal duplication | duplication, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd9-Hoxd10)14Ddu | 2 | 8284 | chromosomal deletion | deletion, Chr 2, Denis Duboule 14 | ||
Del(2Hoxd1-Hoxd10)26Ddu | 2 | 73218 | chromosomal deletion | deletion, Chr 2, Denis Duboule 26 | ||
Del(2Hoxd8-Hoxd10)15Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 15 | ||
Del(2Hoxd8-Hoxd10)21Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 21 | ||
Hoxd10 | 2 | 3181 | + | protein coding gene | homeobox D10 | |
Tssr18409 | 2 | 22 | + | TSS region | transcription start site region 18409 | |
Tssr18410 | 2 | 11 | + | TSS region | transcription start site region 18410 | |
Tssr18411 | 2 | 23 | + | TSS region | transcription start site region 18411 | |
Cpgi11797 | 2 | 553 | CpG island | CpG island 11797 | ||
Alpq2 | 2 | 171 | QTL | alcohol preference QTL 2 | ||
D2Mit37 | 2 | 171 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 37 | ||
Tssr18412 | 2 | 18 | + | TSS region | transcription start site region 18412 | |
Tssr18413 | 2 | 22 | + | TSS region | transcription start site region 18413 | |
Gm14396 | 2 | 1845 | + | lincRNA gene | predicted gene 14396 | |
D2Mit35 | 2 | 139 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 35 | ||
Cpgi11798 | 2 | 269 | CpG island | CpG island 11798 | ||
Gm28793 | 2 | 818 | - | antisense lncRNA gene | predicted gene 28793 | |
D2Mit38.1 | 2 | 182 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38.1 | ||
D2Tfv10 | 2 | 272 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 10 | ||
D2Mit36 | 2 | 227 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 36 | ||
D2Mit38 | 2 | 190 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38 | ||
Cpgi11799 | 2 | 1842 | CpG island | CpG island 11799 | ||
Tssr18414 | 2 | 11 | + | TSS region | transcription start site region 18414 | |
Tssr18415 | 2 | 12 | + | TSS region | transcription start site region 18415 | |
Dp(2Hoxd8-Hoxd9)2Ddu | 2 | 10170 | chromosomal duplication | duplication, Chr 2, Denis Duboule 2 | ||
Del(2Hoxd8-Hoxd9)22Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 22 | ||
Del(2Hoxd8-Hoxd9)18Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 18 | ||
Del(2Hoxd4-Hoxd9)40Ddu | 2 | 31397 | chromosomal deletion | deletion, Chr 2, Denis Duboule 40 | ||
Del(2Hoxd1-Hoxd9)63Ddu | 2 | 67379 | chromosomal deletion | deletion, Chr 2, Denis Duboule 63 | ||
Hoxd9 | 2 | 2445 | + | protein coding gene | homeobox D9 |