Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:73466509-74242639

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
Wipf1 2 73429610 to 73529726 100116 - protein coding gene WAS/WASL interacting protein family, member 1
Gm13708 2 73459705 to 73477602 17897 + lincRNA gene predicted gene 13708
Cpgi11775 2 73485245 to 73485745 500 CpG island CpG island 11775
Tssr18381 2 73485327 to 73485331 4 + TSS region transcription start site region 18381
Tssr24561 2 73485682 to 73485704 22 - TSS region transcription start site region 24561
Tssr24562 2 73485712 to 73485730 18 - TSS region transcription start site region 24562
Tssr24563 2 73485733 to 73485769 36 - TSS region transcription start site region 24563
Tssr24564 2 73486405 to 73486418 13 - TSS region transcription start site region 24564
Tssr24565 2 73486435 to 73486451 16 - TSS region transcription start site region 24565
Tssr24566 2 73486456 to 73486461 5 - TSS region transcription start site region 24566
Tssr24567 2 73486465 to 73486477 12 - TSS region transcription start site region 24567
C130023C23Rik 2 73490229 to 73494293 4064 unclassified non-coding RNA gene Riken cDNA C130023C23 gene
Cpgi11776 2 73528819 to 73529942 1123 CpG island CpG island 11776
Tssr24568 2 73529391 to 73529493 102 - TSS region transcription start site region 24568
Tssr24569 2 73529545 to 73529569 24 - TSS region transcription start site region 24569
Tssr24570 2 73529708 to 73529721 13 - TSS region transcription start site region 24570
Tssr24571 2 73529725 to 73529736 11 - TSS region transcription start site region 24571
Cpgi11777 2 73560939 to 73561118 179 CpG island CpG island 11777
Tssr18382 2 73561068 to 73561090 22 + TSS region transcription start site region 18382
Tssr18383 2 73561102 to 73561111 9 + TSS region transcription start site region 18383
Tssr530 2 73561114 to 73561121 7 + TSS region transcription start site region 530
Gm30940 2 73561186 to 73565378 4192 + lncRNA gene predicted gene, 30940
Chrna1 2 73563281 to 73580338 17057 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
Tssr24572 2 73580288 to 73580353 65 - TSS region transcription start site region 24572
Tssr18384 2 73584835 to 73584891 56 + TSS region transcription start site region 18384
Chrna1os 2 73584850 to 73589208 4358 + antisense lncRNA gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
Chn1os3 2 73596526 to 73616012 19486 + antisense lncRNA gene chimerin 1, opposite strand 3
Chn1 2 73610660 to 73775346 164686 - protein coding gene chimerin 1
Tssr24573 2 73625692 to 73625725 33 - TSS region transcription start site region 24573
Tssr24574 2 73625731 to 73625744 13 - TSS region transcription start site region 24574
Tssr24575 2 73637835 to 73637837 2 - TSS region transcription start site region 24575
Chn1os1 2 73658270 to 73660263 1993 + antisense lncRNA gene chimerin 1, opposite strand 1
Tssr24576 2 73659757 to 73659769 12 - TSS region transcription start site region 24576
Tssr24577 2 73659878 to 73659892 14 - TSS region transcription start site region 24577
Tssr24578 2 73659997 to 73660067 70 - TSS region transcription start site region 24578
Tssr24579 2 73660096 to 73660110 14 - TSS region transcription start site region 24579
Tssr24580 2 73660351 to 73660397 46 - TSS region transcription start site region 24580
Tssr24581 2 73660401 to 73660410 9 - TSS region transcription start site region 24581
Tssr531 2 73660420 to 73660425 5 - TSS region transcription start site region 531
Tssr24582 2 73721938 to 73721969 31 - TSS region transcription start site region 24582
Tssr18385 2 73764864 to 73764872 8 + TSS region transcription start site region 18385
Cpgi11778 2 73774622 to 73775923 1301 CpG island CpG island 11778
Tssr24583 2 73775059 to 73775140 81 - TSS region transcription start site region 24583
Tssr24584 2 73775251 to 73775262 11 - TSS region transcription start site region 24584
Tssr24585 2 73775308 to 73775319 11 - TSS region transcription start site region 24585
Tssr24586 2 73775341 to 73775378 37 - TSS region transcription start site region 24586
Tssr24587 2 73808980 to 73809012 32 - TSS region transcription start site region 24587
Gm13640 2 73809162 to 73809425 263 + pseudogene predicted gene 13640
Atf2 2 73816509 to 73892639 76130 - protein coding gene activating transcription factor 2
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Dp(2Lnp-Atf2)60Ddu 2 73816509 to 74579435 762926 chromosomal duplication duplication, Chr 2, Denis Duboule 60
Gm27421 2 73827665 to 73827831 166 - unclassified non-coding RNA gene predicted gene, 27421
Tssr24588 2 73886175 to 73886179 4 - TSS region transcription start site region 24588
Cpgi11779 2 73891828 to 73893251 1423 CpG island CpG island 11779
Tssr24589 2 73892157 to 73892167 10 - TSS region transcription start site region 24589
Tssr24590 2 73892177 to 73892188 11 - TSS region transcription start site region 24590
Tssr24591 2 73892191 to 73892211 20 - TSS region transcription start site region 24591
Tssr24592 2 73892214 to 73892240 26 - TSS region transcription start site region 24592
Tssr24593 2 73892298 to 73892368 70 - TSS region transcription start site region 24593
Tssr24594 2 73892539 to 73892555 16 - TSS region transcription start site region 24594
Tssr24595 2 73892562 to 73892573 11 - TSS region transcription start site region 24595
Tssr24596 2 73892588 to 73892616 28 - TSS region transcription start site region 24596
Tssr24597 2 73892619 to 73892635 16 - TSS region transcription start site region 24597
Gm10822 2 73892996 to 73900850 7854 + lincRNA gene predicted gene 10822
Atp5g3 2 73908447 to 73911326 2879 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
Cpgi11780 2 73910553 to 73911597 1044 CpG island CpG island 11780
Tssr24598 2 73910973 to 73910985 12 - TSS region transcription start site region 24598
Tssr24599 2 73911007 to 73911056 49 - TSS region transcription start site region 24599
Tssr24600 2 73911285 to 73911308 23 - TSS region transcription start site region 24600
Tssr24601 2 73911311 to 73911316 5 - TSS region transcription start site region 24601
Tssr24602 2 73911323 to 73911328 5 - TSS region transcription start site region 24602
Tssr24603 2 73912432 to 73912466 34 - TSS region transcription start site region 24603
Gm39851 2 73939149 to 73949153 10004 + lncRNA gene predicted gene, 39851
Gm13668 2 73959669 to 73960669 1000 - pseudogene predicted gene 13668
Gm38603 2 73962681 to 73968000 5319 + lncRNA gene predicted gene, 38603
Gm31472 2 73975891 to 73978427 2536 - lncRNA gene predicted gene, 31472
D2Mit10 2 74072522 to 74072671 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 10
A630050E04Rik 2 74100924 to 74102342 1418 - lincRNA gene RIKEN cDNA A630050E04 gene
Gm28640 2 74130181 to 74130730 549 + lincRNA gene predicted gene 28640
Tssr18386 2 74133501 to 74133526 25 + TSS region transcription start site region 18386
Gm13667 2 74135757 to 74150834 15077 + lincRNA gene predicted gene 13667
Cpgi11781 2 74168362 to 74168603 241 CpG island CpG island 11781
Gm31534 2 74203081 to 74210900 7819 + lncRNA gene predicted gene, 31534