Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:72812539-74972555

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416 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aips2 2 65119051 to 74881866 9762815 QTL autoimmune pancreatitis severity 2
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
6430710C18Rik 2 72745846 to 72813717 67871 - lincRNA gene RIKEN cDNA 6430710C18 gene
Tssr24515 2 72813665 to 72813685 20 - TSS region transcription start site region 24515
Tssr18358 2 72828864 to 72828905 41 + TSS region transcription start site region 18358
Gm39849 2 72834404 to 72861777 27373 - lncRNA gene predicted gene, 39849
Tssr24516 2 72886612 to 72886614 2 - TSS region transcription start site region 24516
Tssr526 2 72908564 to 72908601 37 - TSS region transcription start site region 526
Sp3 2 72936430 to 72980446 44016 - protein coding gene trans-acting transcription factor 3
Tssr24517 2 72938056 to 72938081 25 - TSS region transcription start site region 24517
Tssr24518 2 72948194 to 72948199 5 - TSS region transcription start site region 24518
Gm25960 2 72950863 to 72950987 124 - miRNA gene predicted gene, 25960
Tssr24519 2 72953031 to 72953053 22 - TSS region transcription start site region 24519
Tssr24520 2 72955775 to 72955781 6 - TSS region transcription start site region 24520
Hspe1-ps5 2 72955898 to 72956194 296 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 5
Tssr24521 2 72963797 to 72963826 29 - TSS region transcription start site region 24521
Tssr527 2 72970636 to 72970644 8 + TSS region transcription start site region 527
Tssr24522 2 72971374 to 72971386 12 - TSS region transcription start site region 24522
Gm11084 2 72971548 to 72986716 15168 - protein coding gene predicted gene 11084
Cpgi11763 2 72978498 to 72981096 2598 CpG island CpG island 11763
Tssr24523 2 72978988 to 72979066 78 - TSS region transcription start site region 24523
Tssr18359 2 72979091 to 72979134 43 + TSS region transcription start site region 18359
Tssr18360 2 72979146 to 72979157 11 + TSS region transcription start site region 18360
Tssr24524 2 72979263 to 72979342 79 - TSS region transcription start site region 24524
Sp3os 2 72979424 to 72988677 9253 + antisense lncRNA gene trans-acting transcription factor 3, opposite strand
Tssr18361 2 72979428 to 72979501 73 + TSS region transcription start site region 18361
Tssr18362 2 72979503 to 72979520 17 + TSS region transcription start site region 18362
Tssr24525 2 72979602 to 72979668 66 - TSS region transcription start site region 24525
D130067C23Rik 2 72979928 to 72981599 1671 unclassified non-coding RNA gene RIKEN cDNA D130067C23 gene
Tssr18363 2 72979954 to 72979976 22 + TSS region transcription start site region 18363
Tssr24526 2 72980402 to 72980471 69 - TSS region transcription start site region 24526
Tssr24527 2 72980895 to 72980912 17 - TSS region transcription start site region 24527
Tssr24528 2 72980921 to 72980940 19 - TSS region transcription start site region 24528
2410164B09Rik 2 72988243 to 72993732 5489 unclassified gene RIKEN cDNA 2410164B09 gene
Tssr24529 2 72995745 to 72995766 21 - TSS region transcription start site region 24529
Tssr18364 2 72995931 to 72995939 8 + TSS region transcription start site region 18364
Tssr24530 2 72997064 to 72997073 9 - TSS region transcription start site region 24530
Tssr24531 2 72997148 to 72997160 12 - TSS region transcription start site region 24531
Tssr24532 2 72997193 to 72997207 14 - TSS region transcription start site region 24532
Tssr18365 2 72997269 to 72997277 8 + TSS region transcription start site region 18365
Gm39850 2 73008979 to 73014349 5370 + lncRNA gene predicted gene, 39850
Tssr24533 2 73012753 to 73012786 33 - TSS region transcription start site region 24533
Tssr24534 2 73012910 to 73012926 16 - TSS region transcription start site region 24534
Tssr24535 2 73023862 to 73023871 9 - TSS region transcription start site region 24535
Tssr18366 2 73024068 to 73024097 29 + TSS region transcription start site region 18366
Tssr528 2 73038068 to 73038075 7 - TSS region transcription start site region 528
Tssr24536 2 73038391 to 73038395 4 - TSS region transcription start site region 24536
Tssr529 2 73038449 to 73038460 11 - TSS region transcription start site region 529
Tssr18367 2 73085456 to 73085459 3 + TSS region transcription start site region 18367
Ola1 2 73092801 to 73214447 121646 - protein coding gene Obg-like ATPase 1
Gm13665 2 73116748 to 73117275 527 + pseudogene predicted gene 13665
Gm13666 2 73131745 to 73132543 798 + pseudogene predicted gene 13666
Gm13664 2 73176611 to 73176955 344 + pseudogene predicted gene 13664
Cpgi11764 2 73213728 to 73214715 987 CpG island CpG island 11764
Tssr24537 2 73214323 to 73214332 9 - TSS region transcription start site region 24537
Tssr24538 2 73214346 to 73214387 41 - TSS region transcription start site region 24538
Tssr24539 2 73214409 to 73214414 5 - TSS region transcription start site region 24539
Cpgi11765 2 73263774 to 73264589 815 CpG island CpG island 11765
Tssr18368 2 73267997 to 73268005 8 + TSS region transcription start site region 18368
Cpgi11766 2 73270581 to 73271203 622 CpG island CpG island 11766
Cpgi11767 2 73271300 to 73272151 851 CpG island CpG island 11767
Tssr18369 2 73271926 to 73271939 13 + TSS region transcription start site region 18369
Sp9 2 73271926 to 73275771 3845 + protein coding gene trans-acting transcription factor 9
Tssr18370 2 73271947 to 73271959 12 + TSS region transcription start site region 18370
Cpgi11768 2 73272603 to 73274998 2395 CpG island CpG island 11768
Tssr18371 2 73274266 to 73274307 41 + TSS region transcription start site region 18371
Tssr18372 2 73274713 to 73274725 12 + TSS region transcription start site region 18372
Tssr18373 2 73274731 to 73274749 18 + TSS region transcription start site region 18373
Tssr18374 2 73274799 to 73274808 9 + TSS region transcription start site region 18374
Cpgi11769 2 73277203 to 73278028 825 CpG island CpG island 11769
Cpgi11770 2 73278588 to 73279401 813 CpG island CpG island 11770
Cpgi11771 2 73280603 to 73281254 651 CpG island CpG island 11771
Cir1 2 73283872 to 73312592 28720 - protein coding gene corepressor interacting with RBPJ, 1
D2Ertd329e 2 73302624 to 73302871 247 DNA segment DNA segment, Chr 2, ERATO Doi 329, expressed
Cpgi11772 2 73312116 to 73313136 1020 CpG island CpG island 11772
Tssr24540 2 73312559 to 73312585 26 - TSS region transcription start site region 24540
Tssr18375 2 73312633 to 73312665 32 + TSS region transcription start site region 18375
Scrn3 2 73312652 to 73337818 25166 + protein coding gene secernin 3
Tssr18376 2 73312673 to 73312688 15 + TSS region transcription start site region 18376
Tssr24541 2 73312703 to 73312724 21 - TSS region transcription start site region 24541
Tssr18377 2 73322752 to 73322754 2 + TSS region transcription start site region 18377
Gpr155 2 73341506 to 73386572 45066 - protein coding gene G protein-coupled receptor 155
Tssr24542 2 73351940 to 73351963 23 - TSS region transcription start site region 24542
Cpgi11773 2 73356882 to 73357217 335 CpG island CpG island 11773
Gm13703 2 73357268 to 73364333 7065 + antisense lncRNA gene predicted gene 13703
Gm13709 2 73370909 to 73379297 8388 + antisense lncRNA gene predicted gene 13709
Cpgi11774 2 73385878 to 73386964 1086 CpG island CpG island 11774
Tssr24543 2 73386330 to 73386343 13 - TSS region transcription start site region 24543
Tssr24544 2 73386363 to 73386382 19 - TSS region transcription start site region 24544
Tssr24545 2 73386396 to 73386479 83 - TSS region transcription start site region 24545
D230022J07Rik 2 73386970 to 73420498 33528 + unclassified non-coding RNA gene RIKEN cDNA D230022J07 gene
Tssr24546 2 73394287 to 73394299 12 - TSS region transcription start site region 24546
Gm13707 2 73421909 to 73429142 7233 + antisense lncRNA gene predicted gene 13707
Wipf1 2 73429610 to 73529726 100116 - protein coding gene WAS/WASL interacting protein family, member 1
Tssr24547 2 73434982 to 73435014 32 - TSS region transcription start site region 24547
Tssr24548 2 73437214 to 73437236 22 - TSS region transcription start site region 24548
Tssr24549 2 73437310 to 73437331 21 - TSS region transcription start site region 24549
Tssr24550 2 73437523 to 73437541 18 - TSS region transcription start site region 24550
Tssr24551 2 73437592 to 73437607 15 - TSS region transcription start site region 24551
Tssr24552 2 73440043 to 73440058 15 - TSS region transcription start site region 24552
Tssr18378 2 73450590 to 73450612 22 + TSS region transcription start site region 18378
Tssr24553 2 73452666 to 73452712 46 - TSS region transcription start site region 24553
Tssr18379 2 73452796 to 73452809 13 + TSS region transcription start site region 18379
Tssr18380 2 73452824 to 73452834 10 + TSS region transcription start site region 18380
Tssr24554 2 73453869 to 73453884 15 - TSS region transcription start site region 24554
Tssr24555 2 73453888 to 73453900 12 - TSS region transcription start site region 24555
Tssr24556 2 73453918 to 73453933 15 - TSS region transcription start site region 24556
Tssr24557 2 73454820 to 73454827 7 - TSS region transcription start site region 24557
Tssr24558 2 73459667 to 73459682 15 - TSS region transcription start site region 24558
Gm13708 2 73459705 to 73477602 17897 + lincRNA gene predicted gene 13708
Tssr24559 2 73462429 to 73462448 19 - TSS region transcription start site region 24559
Tssr24560 2 73463914 to 73463925 11 - TSS region transcription start site region 24560
Cpgi11775 2 73485245 to 73485745 500 CpG island CpG island 11775
Tssr18381 2 73485327 to 73485331 4 + TSS region transcription start site region 18381
Tssr24561 2 73485682 to 73485704 22 - TSS region transcription start site region 24561
Tssr24562 2 73485712 to 73485730 18 - TSS region transcription start site region 24562
Tssr24563 2 73485733 to 73485769 36 - TSS region transcription start site region 24563
Tssr24564 2 73486405 to 73486418 13 - TSS region transcription start site region 24564
Tssr24565 2 73486435 to 73486451 16 - TSS region transcription start site region 24565
Tssr24566 2 73486456 to 73486461 5 - TSS region transcription start site region 24566
Tssr24567 2 73486465 to 73486477 12 - TSS region transcription start site region 24567
C130023C23Rik 2 73490229 to 73494293 4064 unclassified non-coding RNA gene Riken cDNA C130023C23 gene
Cpgi11776 2 73528819 to 73529942 1123 CpG island CpG island 11776
Tssr24568 2 73529391 to 73529493 102 - TSS region transcription start site region 24568
Tssr24569 2 73529545 to 73529569 24 - TSS region transcription start site region 24569
Tssr24570 2 73529708 to 73529721 13 - TSS region transcription start site region 24570
Tssr24571 2 73529725 to 73529736 11 - TSS region transcription start site region 24571
Cpgi11777 2 73560939 to 73561118 179 CpG island CpG island 11777
Tssr18382 2 73561068 to 73561090 22 + TSS region transcription start site region 18382
Tssr18383 2 73561102 to 73561111 9 + TSS region transcription start site region 18383
Tssr530 2 73561114 to 73561121 7 + TSS region transcription start site region 530
Gm30940 2 73561186 to 73565378 4192 + lncRNA gene predicted gene, 30940
Chrna1 2 73563281 to 73580338 17057 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
Tssr24572 2 73580288 to 73580353 65 - TSS region transcription start site region 24572
Tssr18384 2 73584835 to 73584891 56 + TSS region transcription start site region 18384
Chrna1os 2 73584850 to 73589208 4358 + antisense lncRNA gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
Chn1os3 2 73596526 to 73616012 19486 + antisense lncRNA gene chimerin 1, opposite strand 3
Chn1 2 73610660 to 73775346 164686 - protein coding gene chimerin 1
Tssr24573 2 73625692 to 73625725 33 - TSS region transcription start site region 24573
Tssr24574 2 73625731 to 73625744 13 - TSS region transcription start site region 24574
Tssr24575 2 73637835 to 73637837 2 - TSS region transcription start site region 24575
Chn1os1 2 73658270 to 73660263 1993 + antisense lncRNA gene chimerin 1, opposite strand 1
Tssr24576 2 73659757 to 73659769 12 - TSS region transcription start site region 24576
Tssr24577 2 73659878 to 73659892 14 - TSS region transcription start site region 24577
Tssr24578 2 73659997 to 73660067 70 - TSS region transcription start site region 24578
Tssr24579 2 73660096 to 73660110 14 - TSS region transcription start site region 24579
Tssr24580 2 73660351 to 73660397 46 - TSS region transcription start site region 24580
Tssr24581 2 73660401 to 73660410 9 - TSS region transcription start site region 24581
Tssr531 2 73660420 to 73660425 5 - TSS region transcription start site region 531
Tssr24582 2 73721938 to 73721969 31 - TSS region transcription start site region 24582
Tssr18385 2 73764864 to 73764872 8 + TSS region transcription start site region 18385
Cpgi11778 2 73774622 to 73775923 1301 CpG island CpG island 11778
Tssr24583 2 73775059 to 73775140 81 - TSS region transcription start site region 24583
Tssr24584 2 73775251 to 73775262 11 - TSS region transcription start site region 24584
Tssr24585 2 73775308 to 73775319 11 - TSS region transcription start site region 24585
Tssr24586 2 73775341 to 73775378 37 - TSS region transcription start site region 24586
Tssr24587 2 73808980 to 73809012 32 - TSS region transcription start site region 24587
Gm13640 2 73809162 to 73809425 263 + pseudogene predicted gene 13640
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
Dp(2Lnp-Atf2)60Ddu 2 73816509 to 74579435 762926 chromosomal duplication duplication, Chr 2, Denis Duboule 60
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Atf2 2 73816509 to 73892639 76130 - protein coding gene activating transcription factor 2
Gm27421 2 73827665 to 73827831 166 - unclassified non-coding RNA gene predicted gene, 27421
Tssr24588 2 73886175 to 73886179 4 - TSS region transcription start site region 24588
Cpgi11779 2 73891828 to 73893251 1423 CpG island CpG island 11779
Tssr24589 2 73892157 to 73892167 10 - TSS region transcription start site region 24589
Tssr24590 2 73892177 to 73892188 11 - TSS region transcription start site region 24590
Tssr24591 2 73892191 to 73892211 20 - TSS region transcription start site region 24591
Tssr24592 2 73892214 to 73892240 26 - TSS region transcription start site region 24592
Tssr24593 2 73892298 to 73892368 70 - TSS region transcription start site region 24593
Tssr24594 2 73892539 to 73892555 16 - TSS region transcription start site region 24594
Tssr24595 2 73892562 to 73892573 11 - TSS region transcription start site region 24595
Tssr24596 2 73892588 to 73892616 28 - TSS region transcription start site region 24596
Tssr24597 2 73892619 to 73892635 16 - TSS region transcription start site region 24597
Gm10822 2 73892996 to 73900850 7854 + lincRNA gene predicted gene 10822
Atp5g3 2 73908447 to 73911326 2879 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
Cpgi11780 2 73910553 to 73911597 1044 CpG island CpG island 11780
Tssr24598 2 73910973 to 73910985 12 - TSS region transcription start site region 24598
Tssr24599 2 73911007 to 73911056 49 - TSS region transcription start site region 24599
Tssr24600 2 73911285 to 73911308 23 - TSS region transcription start site region 24600
Tssr24601 2 73911311 to 73911316 5 - TSS region transcription start site region 24601
Tssr24602 2 73911323 to 73911328 5 - TSS region transcription start site region 24602
Tssr24603 2 73912432 to 73912466 34 - TSS region transcription start site region 24603
Gm39851 2 73939149 to 73949153 10004 + lncRNA gene predicted gene, 39851
Gm13668 2 73959669 to 73960669 1000 - pseudogene predicted gene 13668
Gm38603 2 73962681 to 73968000 5319 + lncRNA gene predicted gene, 38603
Gm31472 2 73975891 to 73978427 2536 - lncRNA gene predicted gene, 31472
D2Mit10 2 74072522 to 74072671 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 10
A630050E04Rik 2 74100924 to 74102342 1418 - lincRNA gene RIKEN cDNA A630050E04 gene
Gm28640 2 74130181 to 74130730 549 + lincRNA gene predicted gene 28640
Tssr18386 2 74133501 to 74133526 25 + TSS region transcription start site region 18386
Gm13667 2 74135757 to 74150834 15077 + lincRNA gene predicted gene 13667
Cpgi11781 2 74168362 to 74168603 241 CpG island CpG island 11781
Gm31534 2 74203081 to 74210900 7819 + lncRNA gene predicted gene, 31534
Tssr18387 2 74272510 to 74272515 5 + TSS region transcription start site region 18387
Gm31731 2 74286272 to 74288514 2242 + lncRNA gene predicted gene, 31731
4930441J16Rik 2 74298940 to 74307717 8777 - lincRNA gene RIKEN cDNA 4930441J16 gene