Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:72743449-73333460

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30257 2 72733821 to 72745068 11247 + lncRNA gene predicted gene, 30257
6430710C18Rik 2 72745846 to 72813717 67871 - lincRNA gene RIKEN cDNA 6430710C18 gene
Gm46747 2 72762194 to 72763211 1017 - lncRNA gene predicted gene, 46747
Gm39848 2 72775982 to 72784958 8976 + lncRNA gene predicted gene, 39848
Tssr24515 2 72813665 to 72813685 20 - TSS region transcription start site region 24515
Tssr18358 2 72828864 to 72828905 41 + TSS region transcription start site region 18358
Gm39849 2 72834404 to 72861777 27373 - lncRNA gene predicted gene, 39849
Tssr24516 2 72886612 to 72886614 2 - TSS region transcription start site region 24516
Tssr526 2 72908564 to 72908601 37 - TSS region transcription start site region 526
Sp3 2 72936430 to 72980446 44016 - protein coding gene trans-acting transcription factor 3
Tssr24517 2 72938056 to 72938081 25 - TSS region transcription start site region 24517
Tssr24518 2 72948194 to 72948199 5 - TSS region transcription start site region 24518
Gm25960 2 72950863 to 72950987 124 - miRNA gene predicted gene, 25960
Tssr24519 2 72953031 to 72953053 22 - TSS region transcription start site region 24519
Tssr24520 2 72955775 to 72955781 6 - TSS region transcription start site region 24520
Hspe1-ps5 2 72955898 to 72956194 296 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 5
Tssr24521 2 72963797 to 72963826 29 - TSS region transcription start site region 24521
Tssr527 2 72970636 to 72970644 8 + TSS region transcription start site region 527
Tssr24522 2 72971374 to 72971386 12 - TSS region transcription start site region 24522
Gm11084 2 72971548 to 72986716 15168 - protein coding gene predicted gene 11084
Cpgi11763 2 72978498 to 72981096 2598 CpG island CpG island 11763
Tssr24523 2 72978988 to 72979066 78 - TSS region transcription start site region 24523
Tssr18359 2 72979091 to 72979134 43 + TSS region transcription start site region 18359
Tssr18360 2 72979146 to 72979157 11 + TSS region transcription start site region 18360
Tssr24524 2 72979263 to 72979342 79 - TSS region transcription start site region 24524
Sp3os 2 72979424 to 72988677 9253 + antisense lncRNA gene trans-acting transcription factor 3, opposite strand
Tssr18361 2 72979428 to 72979501 73 + TSS region transcription start site region 18361
Tssr18362 2 72979503 to 72979520 17 + TSS region transcription start site region 18362
Tssr24525 2 72979602 to 72979668 66 - TSS region transcription start site region 24525
D130067C23Rik 2 72979928 to 72981599 1671 unclassified non-coding RNA gene RIKEN cDNA D130067C23 gene
Tssr18363 2 72979954 to 72979976 22 + TSS region transcription start site region 18363
Tssr24526 2 72980402 to 72980471 69 - TSS region transcription start site region 24526
Tssr24527 2 72980895 to 72980912 17 - TSS region transcription start site region 24527
Tssr24528 2 72980921 to 72980940 19 - TSS region transcription start site region 24528
2410164B09Rik 2 72988243 to 72993732 5489 unclassified gene RIKEN cDNA 2410164B09 gene
Tssr24529 2 72995745 to 72995766 21 - TSS region transcription start site region 24529
Tssr18364 2 72995931 to 72995939 8 + TSS region transcription start site region 18364
Tssr24530 2 72997064 to 72997073 9 - TSS region transcription start site region 24530
Tssr24531 2 72997148 to 72997160 12 - TSS region transcription start site region 24531
Tssr24532 2 72997193 to 72997207 14 - TSS region transcription start site region 24532
Tssr18365 2 72997269 to 72997277 8 + TSS region transcription start site region 18365
Gm39850 2 73008979 to 73014349 5370 + lncRNA gene predicted gene, 39850
Tssr24533 2 73012753 to 73012786 33 - TSS region transcription start site region 24533
Tssr24534 2 73012910 to 73012926 16 - TSS region transcription start site region 24534
Tssr24535 2 73023862 to 73023871 9 - TSS region transcription start site region 24535
Tssr18366 2 73024068 to 73024097 29 + TSS region transcription start site region 18366
Tssr528 2 73038068 to 73038075 7 - TSS region transcription start site region 528
Tssr24536 2 73038391 to 73038395 4 - TSS region transcription start site region 24536
Tssr529 2 73038449 to 73038460 11 - TSS region transcription start site region 529
Tssr18367 2 73085456 to 73085459 3 + TSS region transcription start site region 18367
Ola1 2 73092801 to 73214447 121646 - protein coding gene Obg-like ATPase 1
Gm13665 2 73116748 to 73117275 527 + pseudogene predicted gene 13665
Gm13666 2 73131745 to 73132543 798 + pseudogene predicted gene 13666
Gm13664 2 73176611 to 73176955 344 + pseudogene predicted gene 13664
Cpgi11764 2 73213728 to 73214715 987 CpG island CpG island 11764
Tssr24537 2 73214323 to 73214332 9 - TSS region transcription start site region 24537
Tssr24538 2 73214346 to 73214387 41 - TSS region transcription start site region 24538
Tssr24539 2 73214409 to 73214414 5 - TSS region transcription start site region 24539
Cpgi11765 2 73263774 to 73264589 815 CpG island CpG island 11765
Tssr18368 2 73267997 to 73268005 8 + TSS region transcription start site region 18368
Cpgi11766 2 73270581 to 73271203 622 CpG island CpG island 11766
Cpgi11767 2 73271300 to 73272151 851 CpG island CpG island 11767
Tssr18369 2 73271926 to 73271939 13 + TSS region transcription start site region 18369
Sp9 2 73271926 to 73275771 3845 + protein coding gene trans-acting transcription factor 9
Tssr18370 2 73271947 to 73271959 12 + TSS region transcription start site region 18370
Cpgi11768 2 73272603 to 73274998 2395 CpG island CpG island 11768
Tssr18371 2 73274266 to 73274307 41 + TSS region transcription start site region 18371
Tssr18372 2 73274713 to 73274725 12 + TSS region transcription start site region 18372
Tssr18373 2 73274731 to 73274749 18 + TSS region transcription start site region 18373
Tssr18374 2 73274799 to 73274808 9 + TSS region transcription start site region 18374
Cpgi11769 2 73277203 to 73278028 825 CpG island CpG island 11769
Cpgi11770 2 73278588 to 73279401 813 CpG island CpG island 11770
Cpgi11771 2 73280603 to 73281254 651 CpG island CpG island 11771
Cir1 2 73283872 to 73312592 28720 - protein coding gene corepressor interacting with RBPJ, 1
D2Ertd329e 2 73302624 to 73302871 247 DNA segment DNA segment, Chr 2, ERATO Doi 329, expressed
Cpgi11772 2 73312116 to 73313136 1020 CpG island CpG island 11772
Tssr24540 2 73312559 to 73312585 26 - TSS region transcription start site region 24540
Tssr18375 2 73312633 to 73312665 32 + TSS region transcription start site region 18375
Scrn3 2 73312652 to 73337818 25166 + protein coding gene secernin 3
Tssr18376 2 73312673 to 73312688 15 + TSS region transcription start site region 18376
Tssr24541 2 73312703 to 73312724 21 - TSS region transcription start site region 24541
Tssr18377 2 73322752 to 73322754 2 + TSS region transcription start site region 18377