Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:72227687-72427994

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4
Tssr18327 2 72227925 to 72227949 24 + TSS region transcription start site region 18327
Tssr24505 2 72232295 to 72232307 12 - TSS region transcription start site region 24505
Rapgef4os3 2 72244965 to 72248975 4010 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3
Cpgi11755 2 72285421 to 72286430 1009 CpG island CpG island 11755
Map3k20 2 72285637 to 72442610 156973 + protein coding gene mitogen-activated protein kinase kinase kinase 20
Tssr18328 2 72285704 to 72285749 45 + TSS region transcription start site region 18328
Tssr18329 2 72285751 to 72285783 32 + TSS region transcription start site region 18329
Tssr18330 2 72285791 to 72285802 11 + TSS region transcription start site region 18330
Tssr18331 2 72285813 to 72285824 11 + TSS region transcription start site region 18331
Tssr18332 2 72297801 to 72297831 30 + TSS region transcription start site region 18332
Tssr18333 2 72297835 to 72297860 25 + TSS region transcription start site region 18333
Tssr18334 2 72297863 to 72297874 11 + TSS region transcription start site region 18334
Tssr18335 2 72297895 to 72297912 17 + TSS region transcription start site region 18335
Tssr18336 2 72297920 to 72297946 26 + TSS region transcription start site region 18336
Zakit 2 72327687 to 72327994 307 + unclassified non-coding RNA gene sterile alpha motif and leucine zipper containing kinase AZK, intronic transcript
Tssr24506 2 72351427 to 72351433 6 - TSS region transcription start site region 24506
Rpl36a-ps4 2 72360247 to 72360542 295 + pseudogene ribosomal protein L36A, pseudogene 4
Tssr18337 2 72365012 to 72365016 4 + TSS region transcription start site region 18337
Tssr18338 2 72390401 to 72390405 4 + TSS region transcription start site region 18338
Tssr18339 2 72390719 to 72390739 20 + TSS region transcription start site region 18339
Tssr18340 2 72390741 to 72390755 14 + TSS region transcription start site region 18340
Tssr18341 2 72390756 to 72390772 16 + TSS region transcription start site region 18341
Tssr24507 2 72398318 to 72398320 2 - TSS region transcription start site region 24507
Tssr18342 2 72405252 to 72405264 12 + TSS region transcription start site region 18342
Tssr18343 2 72405338 to 72405347 9 + TSS region transcription start site region 18343
Tssr18344 2 72405698 to 72405712 14 + TSS region transcription start site region 18344
Tssr18345 2 72406282 to 72406286 4 + TSS region transcription start site region 18345
Tssr18346 2 72406645 to 72406650 5 + TSS region transcription start site region 18346