Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71899119-72179301

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdk1 2 71873224 to 71903858 30634 + protein coding gene pyruvate dehydrogenase kinase, isoenzyme 1
Gm46785 2 71937836 to 71942033 4197 + lncRNA gene predicted gene, 46785
Gm13746 2 71956053 to 71957368 1315 + lincRNA gene predicted gene 13746
Gm39845 2 71957659 to 71968836 11177 + lncRNA gene predicted gene, 39845
D2Mit328 2 71963824 to 71964058 234 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 328
Cpgi11752 2 71980750 to 71981754 1004 CpG island CpG island 11752
Tssr18302 2 71980986 to 71980995 9 + TSS region transcription start site region 18302
Tssr521 2 71981042 to 71981059 17 + TSS region transcription start site region 521
Tssr18303 2 71981060 to 71981071 11 + TSS region transcription start site region 18303
Tssr18304 2 71981184 to 71981285 101 + TSS region transcription start site region 18304
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4
Gm26408 2 71999666 to 71999792 126 - snoRNA gene predicted gene, 26408
Tssr18305 2 72009395 to 72009399 4 + TSS region transcription start site region 18305
Rapgef4it 2 72014177 to 72015144 967 unclassified gene Rap guanine nucleotide exchange factor (GEF) 4, intronic transcript
Cpgi11753 2 72020884 to 72021125 241 CpG island CpG island 11753
Cpgi11754 2 72039119 to 72039301 182 CpG island CpG island 11754
Gm29940 2 72054040 to 72054907 867 - lncRNA gene predicted gene, 29940
Tssr18306 2 72054585 to 72054597 12 + TSS region transcription start site region 18306
Tssr18307 2 72054598 to 72054640 42 + TSS region transcription start site region 18307
Tssr18308 2 72054655 to 72054676 21 + TSS region transcription start site region 18308
Tssr24502 2 72054913 to 72054918 5 - TSS region transcription start site region 24502
Tssr18309 2 72054933 to 72054965 32 + TSS region transcription start site region 18309
Tssr18310 2 72054973 to 72054996 23 + TSS region transcription start site region 18310
Tssr24503 2 72075079 to 72075087 8 - TSS region transcription start site region 24503
Rapgef4os1 2 72097603 to 72148796 51193 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1
Tssr18311 2 72112746 to 72112747 1 + TSS region transcription start site region 18311
Tssr18312 2 72137124 to 72137142 18 + TSS region transcription start site region 18312
Tssr18313 2 72137168 to 72137182 14 + TSS region transcription start site region 18313
Tssr18314 2 72137215 to 72137240 25 + TSS region transcription start site region 18314
Tssr18315 2 72145590 to 72145613 23 + TSS region transcription start site region 18315
Rapgef4os2 2 72150935 to 72158466 7531 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2
Tssr18316 2 72152523 to 72152528 5 + TSS region transcription start site region 18316
Tssr24504 2 72156426 to 72156441 15 - TSS region transcription start site region 24504
Tssr18317 2 72173239 to 72173242 3 + TSS region transcription start site region 18317
Tssr18318 2 72174237 to 72174251 14 + TSS region transcription start site region 18318