Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71856042-72106059

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga6 2 71786886 to 71858427 71541 + protein coding gene integrin alpha 6
Tssr18292 2 71866127 to 71866132 5 + TSS region transcription start site region 18292
Tssr24499 2 71867551 to 71867584 33 - TSS region transcription start site region 24499
Tssr18293 2 71867754 to 71867759 5 + TSS region transcription start site region 18293
Tssr24500 2 71868306 to 71868326 20 - TSS region transcription start site region 24500
Tssr18294 2 71868507 to 71868513 6 + TSS region transcription start site region 18294
Tssr18295 2 71868514 to 71868526 12 + TSS region transcription start site region 18295
Cpgi11751 2 71872769 to 71874074 1305 CpG island CpG island 11751
Tssr24501 2 71873050 to 71873092 42 - TSS region transcription start site region 24501
Pdk1 2 71873224 to 71903858 30634 + protein coding gene pyruvate dehydrogenase kinase, isoenzyme 1
Tssr18296 2 71873258 to 71873263 5 + TSS region transcription start site region 18296
Tssr18297 2 71873266 to 71873272 6 + TSS region transcription start site region 18297
Tssr18298 2 71873278 to 71873326 48 + TSS region transcription start site region 18298
Tssr520 2 71873345 to 71873346 1 + TSS region transcription start site region 520
Tssr18299 2 71873346 to 71873349 3 + TSS region transcription start site region 18299
Tssr18300 2 71873365 to 71873374 9 + TSS region transcription start site region 18300
Tssr18301 2 71875081 to 71875090 9 + TSS region transcription start site region 18301
Gm46785 2 71937836 to 71942033 4197 + lncRNA gene predicted gene, 46785
Gm13746 2 71956053 to 71957368 1315 + lincRNA gene predicted gene 13746
Gm39845 2 71957659 to 71968836 11177 + lncRNA gene predicted gene, 39845
D2Mit328 2 71963824 to 71964058 234 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 328
Cpgi11752 2 71980750 to 71981754 1004 CpG island CpG island 11752
Tssr18302 2 71980986 to 71980995 9 + TSS region transcription start site region 18302
Tssr521 2 71981042 to 71981059 17 + TSS region transcription start site region 521
Tssr18303 2 71981060 to 71981071 11 + TSS region transcription start site region 18303
Tssr18304 2 71981184 to 71981285 101 + TSS region transcription start site region 18304
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4
Gm26408 2 71999666 to 71999792 126 - snoRNA gene predicted gene, 26408
Tssr18305 2 72009395 to 72009399 4 + TSS region transcription start site region 18305
Rapgef4it 2 72014177 to 72015144 967 unclassified gene Rap guanine nucleotide exchange factor (GEF) 4, intronic transcript
Cpgi11753 2 72020884 to 72021125 241 CpG island CpG island 11753
Cpgi11754 2 72039119 to 72039301 182 CpG island CpG island 11754
Gm29940 2 72054040 to 72054907 867 - lncRNA gene predicted gene, 29940
Tssr18306 2 72054585 to 72054597 12 + TSS region transcription start site region 18306
Tssr18307 2 72054598 to 72054640 42 + TSS region transcription start site region 18307
Tssr18308 2 72054655 to 72054676 21 + TSS region transcription start site region 18308
Tssr24502 2 72054913 to 72054918 5 - TSS region transcription start site region 24502
Tssr18309 2 72054933 to 72054965 32 + TSS region transcription start site region 18309
Tssr18310 2 72054973 to 72054996 23 + TSS region transcription start site region 18310
Tssr24503 2 72075079 to 72075087 8 - TSS region transcription start site region 24503
Rapgef4os1 2 72097603 to 72148796 51193 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1