Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71847881-73037893

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172 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga6 2 71786886 to 71858427 71541 + protein coding gene integrin alpha 6
Tssr18292 2 71866127 to 71866132 5 + TSS region transcription start site region 18292
Tssr24499 2 71867551 to 71867584 33 - TSS region transcription start site region 24499
Tssr18293 2 71867754 to 71867759 5 + TSS region transcription start site region 18293
Tssr24500 2 71868306 to 71868326 20 - TSS region transcription start site region 24500
Tssr18294 2 71868507 to 71868513 6 + TSS region transcription start site region 18294
Tssr18295 2 71868514 to 71868526 12 + TSS region transcription start site region 18295
Cpgi11751 2 71872769 to 71874074 1305 CpG island CpG island 11751
Tssr24501 2 71873050 to 71873092 42 - TSS region transcription start site region 24501
Pdk1 2 71873224 to 71903858 30634 + protein coding gene pyruvate dehydrogenase kinase, isoenzyme 1
Tssr18296 2 71873258 to 71873263 5 + TSS region transcription start site region 18296
Tssr18297 2 71873266 to 71873272 6 + TSS region transcription start site region 18297
Tssr18298 2 71873278 to 71873326 48 + TSS region transcription start site region 18298
Tssr520 2 71873345 to 71873346 1 + TSS region transcription start site region 520
Tssr18299 2 71873346 to 71873349 3 + TSS region transcription start site region 18299
Tssr18300 2 71873365 to 71873374 9 + TSS region transcription start site region 18300
Tssr18301 2 71875081 to 71875090 9 + TSS region transcription start site region 18301
Gm46785 2 71937836 to 71942033 4197 + lncRNA gene predicted gene, 46785
Gm13746 2 71956053 to 71957368 1315 + lincRNA gene predicted gene 13746
Gm39845 2 71957659 to 71968836 11177 + lncRNA gene predicted gene, 39845
D2Mit328 2 71963824 to 71964058 234 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 328
Cpgi11752 2 71980750 to 71981754 1004 CpG island CpG island 11752
Tssr18302 2 71980986 to 71980995 9 + TSS region transcription start site region 18302
Tssr521 2 71981042 to 71981059 17 + TSS region transcription start site region 521
Tssr18303 2 71981060 to 71981071 11 + TSS region transcription start site region 18303
Tssr18304 2 71981184 to 71981285 101 + TSS region transcription start site region 18304
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4
Gm26408 2 71999666 to 71999792 126 - snoRNA gene predicted gene, 26408
Tssr18305 2 72009395 to 72009399 4 + TSS region transcription start site region 18305
Rapgef4it 2 72014177 to 72015144 967 unclassified gene Rap guanine nucleotide exchange factor (GEF) 4, intronic transcript
Cpgi11753 2 72020884 to 72021125 241 CpG island CpG island 11753
Cpgi11754 2 72039119 to 72039301 182 CpG island CpG island 11754
Gm29940 2 72054040 to 72054907 867 - lncRNA gene predicted gene, 29940
Tssr18306 2 72054585 to 72054597 12 + TSS region transcription start site region 18306
Tssr18307 2 72054598 to 72054640 42 + TSS region transcription start site region 18307
Tssr18308 2 72054655 to 72054676 21 + TSS region transcription start site region 18308
Tssr24502 2 72054913 to 72054918 5 - TSS region transcription start site region 24502
Tssr18309 2 72054933 to 72054965 32 + TSS region transcription start site region 18309
Tssr18310 2 72054973 to 72054996 23 + TSS region transcription start site region 18310
Tssr24503 2 72075079 to 72075087 8 - TSS region transcription start site region 24503
Rapgef4os1 2 72097603 to 72148796 51193 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1
Tssr18311 2 72112746 to 72112747 1 + TSS region transcription start site region 18311
Tssr18312 2 72137124 to 72137142 18 + TSS region transcription start site region 18312
Tssr18313 2 72137168 to 72137182 14 + TSS region transcription start site region 18313
Tssr18314 2 72137215 to 72137240 25 + TSS region transcription start site region 18314
Tssr18315 2 72145590 to 72145613 23 + TSS region transcription start site region 18315
Rapgef4os2 2 72150935 to 72158466 7531 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2
Tssr18316 2 72152523 to 72152528 5 + TSS region transcription start site region 18316
Tssr24504 2 72156426 to 72156441 15 - TSS region transcription start site region 24504
Tssr18317 2 72173239 to 72173242 3 + TSS region transcription start site region 18317
Tssr18318 2 72174237 to 72174251 14 + TSS region transcription start site region 18318
Tssr18319 2 72179817 to 72179841 24 + TSS region transcription start site region 18319
Tssr18320 2 72179987 to 72180049 62 + TSS region transcription start site region 18320
Tssr18321 2 72180052 to 72180066 14 + TSS region transcription start site region 18321
Tssr18322 2 72180222 to 72180228 6 + TSS region transcription start site region 18322
Tssr18323 2 72180439 to 72180457 18 + TSS region transcription start site region 18323
Tssr18324 2 72205645 to 72205646 1 + TSS region transcription start site region 18324
Tssr18325 2 72207690 to 72207701 11 + TSS region transcription start site region 18325
Tssr18326 2 72212656 to 72212665 9 + TSS region transcription start site region 18326
Tssr18327 2 72227925 to 72227949 24 + TSS region transcription start site region 18327
Tssr24505 2 72232295 to 72232307 12 - TSS region transcription start site region 24505
Rapgef4os3 2 72244965 to 72248975 4010 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3
Cpgi11755 2 72285421 to 72286430 1009 CpG island CpG island 11755
Map3k20 2 72285637 to 72442610 156973 + protein coding gene mitogen-activated protein kinase kinase kinase 20
Tssr18328 2 72285704 to 72285749 45 + TSS region transcription start site region 18328
Tssr18329 2 72285751 to 72285783 32 + TSS region transcription start site region 18329
Tssr18330 2 72285791 to 72285802 11 + TSS region transcription start site region 18330
Tssr18331 2 72285813 to 72285824 11 + TSS region transcription start site region 18331
Tssr18332 2 72297801 to 72297831 30 + TSS region transcription start site region 18332
Tssr18333 2 72297835 to 72297860 25 + TSS region transcription start site region 18333
Tssr18334 2 72297863 to 72297874 11 + TSS region transcription start site region 18334
Tssr18335 2 72297895 to 72297912 17 + TSS region transcription start site region 18335
Tssr18336 2 72297920 to 72297946 26 + TSS region transcription start site region 18336
Zakit 2 72327687 to 72327994 307 + unclassified non-coding RNA gene sterile alpha motif and leucine zipper containing kinase AZK, intronic transcript
Tssr24506 2 72351427 to 72351433 6 - TSS region transcription start site region 24506
Rpl36a-ps4 2 72360247 to 72360542 295 + pseudogene ribosomal protein L36A, pseudogene 4
Tssr18337 2 72365012 to 72365016 4 + TSS region transcription start site region 18337
Tssr18338 2 72390401 to 72390405 4 + TSS region transcription start site region 18338
Tssr18339 2 72390719 to 72390739 20 + TSS region transcription start site region 18339
Tssr18340 2 72390741 to 72390755 14 + TSS region transcription start site region 18340
Tssr18341 2 72390756 to 72390772 16 + TSS region transcription start site region 18341
Tssr24507 2 72398318 to 72398320 2 - TSS region transcription start site region 24507
Tssr18342 2 72405252 to 72405264 12 + TSS region transcription start site region 18342
Tssr18343 2 72405338 to 72405347 9 + TSS region transcription start site region 18343
Tssr18344 2 72405698 to 72405712 14 + TSS region transcription start site region 18344
Tssr18345 2 72406282 to 72406286 4 + TSS region transcription start site region 18345
Tssr18346 2 72406645 to 72406650 5 + TSS region transcription start site region 18346
Tssr24508 2 72442881 to 72442893 12 - TSS region transcription start site region 24508
Tssr24509 2 72442900 to 72442910 10 - TSS region transcription start site region 24509
Tssr24510 2 72442927 to 72442945 18 - TSS region transcription start site region 24510
Tssr18347 2 72443062 to 72443076 14 + TSS region transcription start site region 18347
Tssr18348 2 72443089 to 72443103 14 + TSS region transcription start site region 18348
Tssr18349 2 72444661 to 72444669 8 + TSS region transcription start site region 18349
Tssr18350 2 72445628 to 72445647 19 + TSS region transcription start site region 18350
Tssr24511 2 72446342 to 72446369 27 - TSS region transcription start site region 24511
Tssr24512 2 72446378 to 72446388 10 - TSS region transcription start site region 24512
Gm39847 2 72457308 to 72464495 7187 - lncRNA gene predicted gene, 39847
Cpgi11756 2 72475912 to 72477230 1318 CpG island CpG island 11756
Tssr18351 2 72475996 to 72476000 4 + TSS region transcription start site region 18351
Tssr18352 2 72476173 to 72476212 39 + TSS region transcription start site region 18352
Cdca7 2 72476198 to 72486890 10692 + protein coding gene cell division cycle associated 7
Tssr18353 2 72476213 to 72476224 11 + TSS region transcription start site region 18353
Tssr18354 2 72476225 to 72476259 34 + TSS region transcription start site region 18354
Tssr522 2 72480032 to 72480048 16 + TSS region transcription start site region 522
Tssr523 2 72480079 to 72480082 3 + TSS region transcription start site region 523
Cpgi11757 2 72499431 to 72499673 242 CpG island CpG island 11757
Cpgi11758 2 72529866 to 72530043 177 CpG island CpG island 11758
Cpgi11759 2 72534256 to 72534634 378 CpG island CpG island 11759
Tssr18355 2 72545182 to 72545186 4 + TSS region transcription start site region 18355
Rps13-ps8 2 72545212 to 72545612 400 + pseudogene ribosmal protein S13, pseudogene 8
Cpgi11760 2 72565838 to 72566213 375 CpG island CpG island 11760
Eif1-ps3 2 72570481 to 72570822 341 - pseudogene eukaryotic translation initiation factor 1, pseudogene 3
Tssr18356 2 72597545 to 72597548 3 + TSS region transcription start site region 18356
Gm30069 2 72603925 to 72615214 11289 - lncRNA gene predicted gene, 30069
Tssr18357 2 72609117 to 72609125 8 + TSS region transcription start site region 18357
Tssr24513 2 72615164 to 72615169 5 - TSS region transcription start site region 24513
D2Mit245 2 72624072 to 72624172 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 245
4930550I04Rik 2 72629022 to 72630431 1409 unclassified gene RIKEN cDNA 4930550I04 gene
Tssr24514 2 72630396 to 72630409 13 - TSS region transcription start site region 24514
Pex13-ps 2 72632270 to 72633426 1156 + pseudogene peroxisomal biogenesis factor 13, pseudogene
Cpgi11761 2 72633836 to 72634091 255 CpG island CpG island 11761
Tssr524 2 72633843 to 72633847 4 + TSS region transcription start site region 524
Ak3l2-ps 2 72633936 to 72634607 671 + pseudogene adenylate kinase 3-like 2, pseudogene
Tssr525 2 72634043 to 72634060 17 + TSS region transcription start site region 525
8430437L04Rik 2 72703510 to 72729468 25958 + lincRNA gene RIKEN cDNA 8430437L04 gene
Gm30257 2 72733821 to 72745068 11247 + lncRNA gene predicted gene, 30257
Cpgi11762 2 72741192 to 72741402 210 CpG island CpG island 11762
6430710C18Rik 2 72745846 to 72813717 67871 - lincRNA gene RIKEN cDNA 6430710C18 gene
Gm46747 2 72762194 to 72763211 1017 - lncRNA gene predicted gene, 46747
Gm39848 2 72775982 to 72784958 8976 + lncRNA gene predicted gene, 39848
Tssr24515 2 72813665 to 72813685 20 - TSS region transcription start site region 24515
Tssr18358 2 72828864 to 72828905 41 + TSS region transcription start site region 18358
Gm39849 2 72834404 to 72861777 27373 - lncRNA gene predicted gene, 39849
Tssr24516 2 72886612 to 72886614 2 - TSS region transcription start site region 24516
Tssr526 2 72908564 to 72908601 37 - TSS region transcription start site region 526
Sp3 2 72936430 to 72980446 44016 - protein coding gene trans-acting transcription factor 3
Tssr24517 2 72938056 to 72938081 25 - TSS region transcription start site region 24517
Tssr24518 2 72948194 to 72948199 5 - TSS region transcription start site region 24518
Gm25960 2 72950863 to 72950987 124 - miRNA gene predicted gene, 25960
Tssr24519 2 72953031 to 72953053 22 - TSS region transcription start site region 24519
Tssr24520 2 72955775 to 72955781 6 - TSS region transcription start site region 24520
Hspe1-ps5 2 72955898 to 72956194 296 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 5
Tssr24521 2 72963797 to 72963826 29 - TSS region transcription start site region 24521
Tssr527 2 72970636 to 72970644 8 + TSS region transcription start site region 527
Tssr24522 2 72971374 to 72971386 12 - TSS region transcription start site region 24522
Gm11084 2 72971548 to 72986716 15168 - protein coding gene predicted gene 11084
Cpgi11763 2 72978498 to 72981096 2598 CpG island CpG island 11763
Tssr24523 2 72978988 to 72979066 78 - TSS region transcription start site region 24523
Tssr18359 2 72979091 to 72979134 43 + TSS region transcription start site region 18359
Tssr18360 2 72979146 to 72979157 11 + TSS region transcription start site region 18360
Tssr24524 2 72979263 to 72979342 79 - TSS region transcription start site region 24524
Sp3os 2 72979424 to 72988677 9253 + antisense lncRNA gene trans-acting transcription factor 3, opposite strand
Tssr18361 2 72979428 to 72979501 73 + TSS region transcription start site region 18361
Tssr18362 2 72979503 to 72979520 17 + TSS region transcription start site region 18362
Tssr24525 2 72979602 to 72979668 66 - TSS region transcription start site region 24525
D130067C23Rik 2 72979928 to 72981599 1671 unclassified non-coding RNA gene RIKEN cDNA D130067C23 gene
Tssr18363 2 72979954 to 72979976 22 + TSS region transcription start site region 18363
Tssr24526 2 72980402 to 72980471 69 - TSS region transcription start site region 24526
Tssr24527 2 72980895 to 72980912 17 - TSS region transcription start site region 24527
Tssr24528 2 72980921 to 72980940 19 - TSS region transcription start site region 24528
2410164B09Rik 2 72988243 to 72993732 5489 unclassified gene RIKEN cDNA 2410164B09 gene
Tssr24529 2 72995745 to 72995766 21 - TSS region transcription start site region 24529
Tssr18364 2 72995931 to 72995939 8 + TSS region transcription start site region 18364
Tssr24530 2 72997064 to 72997073 9 - TSS region transcription start site region 24530
Tssr24531 2 72997148 to 72997160 12 - TSS region transcription start site region 24531
Tssr24532 2 72997193 to 72997207 14 - TSS region transcription start site region 24532
Tssr18365 2 72997269 to 72997277 8 + TSS region transcription start site region 18365
Gm39850 2 73008979 to 73014349 5370 + lncRNA gene predicted gene, 39850
Tssr24533 2 73012753 to 73012786 33 - TSS region transcription start site region 24533
Tssr24534 2 73012910 to 73012926 16 - TSS region transcription start site region 24534
Tssr24535 2 73023862 to 73023871 9 - TSS region transcription start site region 24535
Tssr18366 2 73024068 to 73024097 29 + TSS region transcription start site region 18366