Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71647836-72232033

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
Gm36909 2 71655566 to 71657684 2118 + lncRNA gene predicted gene, 36909
Tssr24494 2 71663116 to 71663165 49 - TSS region transcription start site region 24494
Tssr18282 2 71719385 to 71719393 8 + TSS region transcription start site region 18282
Platr26 2 71719417 to 71730966 11549 + lincRNA gene pluripotency associated transcript 26
Gm13647 2 71737815 to 71745397 7582 + lincRNA gene predicted gene 13647
Tssr24495 2 71745740 to 71745772 32 - TSS region transcription start site region 24495
Tssr18283 2 71745824 to 71745861 37 + TSS region transcription start site region 18283
Gm13663 2 71747507 to 71750200 2693 + unclassified non-coding RNA gene predicted gene 13663
Gm17250 2 71748075 to 71750162 2087 - lincRNA gene predicted gene, 17250
Gm13662 2 71749925 to 71759801 9876 + unclassified non-coding RNA gene predicted gene 13662
Tssr24496 2 71750083 to 71750095 12 - TSS region transcription start site region 24496
Tssr24497 2 71750306 to 71750321 15 - TSS region transcription start site region 24497
Gm13739 2 71762238 to 71762767 529 - pseudogene predicted gene 13739
D2Mit11 2 71778844 to 71779068 224 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 11
Cpgi11750 2 71786525 to 71787960 1435 CpG island CpG island 11750
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
Itga6 2 71786886 to 71858427 71541 + protein coding gene integrin alpha 6
Tssr18284 2 71786898 to 71786908 10 + TSS region transcription start site region 18284
Tssr18285 2 71786923 to 71786945 22 + TSS region transcription start site region 18285
Tssr18286 2 71787014 to 71787045 31 + TSS region transcription start site region 18286
Tssr18287 2 71787057 to 71787083 26 + TSS region transcription start site region 18287
Tssr18288 2 71787098 to 71787107 9 + TSS region transcription start site region 18288
Tssr18289 2 71787115 to 71787133 18 + TSS region transcription start site region 18289
Tssr519 2 71787827 to 71787829 2 - TSS region transcription start site region 519
Tssr18290 2 71805973 to 71805985 12 + TSS region transcription start site region 18290
Tssr24498 2 71810183 to 71810189 6 - TSS region transcription start site region 24498
Tssr18291 2 71814246 to 71814256 10 + TSS region transcription start site region 18291
Tssr18292 2 71866127 to 71866132 5 + TSS region transcription start site region 18292
Tssr24499 2 71867551 to 71867584 33 - TSS region transcription start site region 24499
Tssr18293 2 71867754 to 71867759 5 + TSS region transcription start site region 18293
Tssr24500 2 71868306 to 71868326 20 - TSS region transcription start site region 24500
Tssr18294 2 71868507 to 71868513 6 + TSS region transcription start site region 18294
Tssr18295 2 71868514 to 71868526 12 + TSS region transcription start site region 18295
Cpgi11751 2 71872769 to 71874074 1305 CpG island CpG island 11751
Tssr24501 2 71873050 to 71873092 42 - TSS region transcription start site region 24501
Pdk1 2 71873224 to 71903858 30634 + protein coding gene pyruvate dehydrogenase kinase, isoenzyme 1
Tssr18296 2 71873258 to 71873263 5 + TSS region transcription start site region 18296
Tssr18297 2 71873266 to 71873272 6 + TSS region transcription start site region 18297
Tssr18298 2 71873278 to 71873326 48 + TSS region transcription start site region 18298
Tssr520 2 71873345 to 71873346 1 + TSS region transcription start site region 520
Tssr18299 2 71873346 to 71873349 3 + TSS region transcription start site region 18299
Tssr18300 2 71873365 to 71873374 9 + TSS region transcription start site region 18300
Tssr18301 2 71875081 to 71875090 9 + TSS region transcription start site region 18301
Gm46785 2 71937836 to 71942033 4197 + lncRNA gene predicted gene, 46785
Gm13746 2 71956053 to 71957368 1315 + lincRNA gene predicted gene 13746
Gm39845 2 71957659 to 71968836 11177 + lncRNA gene predicted gene, 39845
D2Mit328 2 71963824 to 71964058 234 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 328
Cpgi11752 2 71980750 to 71981754 1004 CpG island CpG island 11752
Tssr18302 2 71980986 to 71980995 9 + TSS region transcription start site region 18302
Tssr521 2 71981042 to 71981059 17 + TSS region transcription start site region 521
Tssr18303 2 71981060 to 71981071 11 + TSS region transcription start site region 18303
Tssr18304 2 71981184 to 71981285 101 + TSS region transcription start site region 18304
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4
Gm26408 2 71999666 to 71999792 126 - snoRNA gene predicted gene, 26408
Tssr18305 2 72009395 to 72009399 4 + TSS region transcription start site region 18305
Rapgef4it 2 72014177 to 72015144 967 unclassified gene Rap guanine nucleotide exchange factor (GEF) 4, intronic transcript
Cpgi11753 2 72020884 to 72021125 241 CpG island CpG island 11753
Cpgi11754 2 72039119 to 72039301 182 CpG island CpG island 11754
Gm29940 2 72054040 to 72054907 867 - lncRNA gene predicted gene, 29940
Tssr18306 2 72054585 to 72054597 12 + TSS region transcription start site region 18306
Tssr18307 2 72054598 to 72054640 42 + TSS region transcription start site region 18307
Tssr18308 2 72054655 to 72054676 21 + TSS region transcription start site region 18308
Tssr24502 2 72054913 to 72054918 5 - TSS region transcription start site region 24502
Tssr18309 2 72054933 to 72054965 32 + TSS region transcription start site region 18309
Tssr18310 2 72054973 to 72054996 23 + TSS region transcription start site region 18310
Tssr24503 2 72075079 to 72075087 8 - TSS region transcription start site region 24503
Rapgef4os1 2 72097603 to 72148796 51193 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1
Tssr18311 2 72112746 to 72112747 1 + TSS region transcription start site region 18311
Tssr18312 2 72137124 to 72137142 18 + TSS region transcription start site region 18312
Tssr18313 2 72137168 to 72137182 14 + TSS region transcription start site region 18313
Tssr18314 2 72137215 to 72137240 25 + TSS region transcription start site region 18314
Tssr18315 2 72145590 to 72145613 23 + TSS region transcription start site region 18315
Rapgef4os2 2 72150935 to 72158466 7531 - antisense lncRNA gene Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2
Tssr18316 2 72152523 to 72152528 5 + TSS region transcription start site region 18316
Tssr24504 2 72156426 to 72156441 15 - TSS region transcription start site region 24504
Tssr18317 2 72173239 to 72173242 3 + TSS region transcription start site region 18317
Tssr18318 2 72174237 to 72174251 14 + TSS region transcription start site region 18318
Tssr18319 2 72179817 to 72179841 24 + TSS region transcription start site region 18319
Tssr18320 2 72179987 to 72180049 62 + TSS region transcription start site region 18320
Tssr18321 2 72180052 to 72180066 14 + TSS region transcription start site region 18321
Tssr18322 2 72180222 to 72180228 6 + TSS region transcription start site region 18322
Tssr18323 2 72180439 to 72180457 18 + TSS region transcription start site region 18323
Tssr18324 2 72205645 to 72205646 1 + TSS region transcription start site region 18324
Tssr18325 2 72207690 to 72207701 11 + TSS region transcription start site region 18325
Tssr18326 2 72212656 to 72212665 9 + TSS region transcription start site region 18326
Tssr18327 2 72227925 to 72227949 24 + TSS region transcription start site region 18327