Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71533116-71793165

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
Dlx1 2 71528113 to 71533981 5868 + protein coding gene distal-less homeobox 1
Dlx1as 2 71530638 to 71537891 7253 - antisense lncRNA gene distal-less homeobox 1, antisense
Tssr24485 2 71537678 to 71537681 3 - TSS region transcription start site region 24485
Tssr24486 2 71537891 to 71537907 16 - TSS region transcription start site region 24486
Cpgi11744 2 71541024 to 71541697 673 CpG island CpG island 11744
Cpgi11745 2 71542896 to 71543417 521 CpG island CpG island 11745
Dlx2 2 71543408 to 71546754 3346 - protein coding gene distal-less homeobox 2
Tssr24487 2 71543873 to 71543878 5 - TSS region transcription start site region 24487
Cpgi11746 2 71544114 to 71547022 2908 CpG island CpG island 11746
Tssr24488 2 71546136 to 71546148 12 - TSS region transcription start site region 24488
Tssr24489 2 71546344 to 71546367 23 - TSS region transcription start site region 24489
Tssr24490 2 71546368 to 71546399 31 - TSS region transcription start site region 24490
Tssr24491 2 71546401 to 71546469 68 - TSS region transcription start site region 24491
Tssr24492 2 71546484 to 71546498 14 - TSS region transcription start site region 24492
Tssr24493 2 71546745 to 71546758 13 - TSS region transcription start site region 24493
Cpgi11747 2 71551903 to 71552065 162 CpG island CpG island 11747
D2Mit92 2 71579653 to 71579801 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 92
Cpgi11748 2 71580991 to 71581498 507 CpG island CpG island 11748
Gm36857 2 71591329 to 71605750 14421 + lncRNA gene predicted gene, 36857
Cpgi11749 2 71629249 to 71630072 823 CpG island CpG island 11749
Tssr18281 2 71644298 to 71644318 20 + TSS region transcription start site region 18281
Gm36909 2 71655566 to 71657684 2118 + lncRNA gene predicted gene, 36909
Tssr24494 2 71663116 to 71663165 49 - TSS region transcription start site region 24494
Tssr18282 2 71719385 to 71719393 8 + TSS region transcription start site region 18282
Platr26 2 71719417 to 71730966 11549 + lincRNA gene pluripotency associated transcript 26
Gm13647 2 71737815 to 71745397 7582 + lincRNA gene predicted gene 13647
Tssr24495 2 71745740 to 71745772 32 - TSS region transcription start site region 24495
Tssr18283 2 71745824 to 71745861 37 + TSS region transcription start site region 18283
Gm13663 2 71747507 to 71750200 2693 + unclassified non-coding RNA gene predicted gene 13663
Gm17250 2 71748075 to 71750162 2087 - lincRNA gene predicted gene, 17250
Gm13662 2 71749925 to 71759801 9876 + unclassified non-coding RNA gene predicted gene 13662
Tssr24496 2 71750083 to 71750095 12 - TSS region transcription start site region 24496
Tssr24497 2 71750306 to 71750321 15 - TSS region transcription start site region 24497
Gm13739 2 71762238 to 71762767 529 - pseudogene predicted gene 13739
D2Mit11 2 71778844 to 71779068 224 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 11
Cpgi11750 2 71786525 to 71787960 1435 CpG island CpG island 11750
Itga6 2 71786886 to 71858427 71541 + protein coding gene integrin alpha 6
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
Tssr18284 2 71786898 to 71786908 10 + TSS region transcription start site region 18284
Tssr18285 2 71786923 to 71786945 22 + TSS region transcription start site region 18285
Tssr18286 2 71787014 to 71787045 31 + TSS region transcription start site region 18286
Tssr18287 2 71787057 to 71787083 26 + TSS region transcription start site region 18287
Tssr18288 2 71787098 to 71787107 9 + TSS region transcription start site region 18288
Tssr18289 2 71787115 to 71787133 18 + TSS region transcription start site region 18289
Tssr519 2 71787827 to 71787829 2 - TSS region transcription start site region 519