Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:71063538-71993547

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae33 2 36101667 to 71779068 35677401 QTL experimental allergic encephalomyelitis susceptibility 33
Dcaf17 2 71055328 to 71099142 43814 + protein coding gene DDB1 and CUL4 associated factor 17
Tssr18238 2 71084169 to 71084180 11 + TSS region transcription start site region 18238
Cpgi11735 2 71117808 to 71118716 908 CpG island CpG island 11735
Tssr18239 2 71118039 to 71118061 22 + TSS region transcription start site region 18239
Cybrd1 2 71118054 to 71142926 24872 + protein coding gene cytochrome b reductase 1
Tssr18240 2 71118075 to 71118096 21 + TSS region transcription start site region 18240
Tssr18241 2 71118104 to 71118113 9 + TSS region transcription start site region 18241
Tssr18242 2 71129775 to 71129801 26 + TSS region transcription start site region 18242
Gm39576 2 71155197 to 71159092 3895 + lncRNA gene predicted gene, 39576
Cpgi11736 2 71203823 to 71204094 271 CpG island CpG island 11736
Cpgi11737 2 71211659 to 71212323 664 CpG island CpG island 11737
Dync1i2 2 71211706 to 71263303 51597 + protein coding gene dynein cytoplasmic 1 intermediate chain 2
Tssr18243 2 71211713 to 71211794 81 + TSS region transcription start site region 18243
Tssr18244 2 71211795 to 71211812 17 + TSS region transcription start site region 18244
Tssr18245 2 71211828 to 71211839 11 + TSS region transcription start site region 18245
Tssr18246 2 71211941 to 71211996 55 + TSS region transcription start site region 18246
Tssr18247 2 71211998 to 71212012 14 + TSS region transcription start site region 18247
Tssr18248 2 71214425 to 71214462 37 + TSS region transcription start site region 18248
Tssr18249 2 71214472 to 71214498 26 + TSS region transcription start site region 18249
Tssr18250 2 71260843 to 71260856 13 + TSS region transcription start site region 18250
Tssr18251 2 71262871 to 71262926 55 + TSS region transcription start site region 18251
Slc25a12 2 71274270 to 71367554 93284 - protein coding gene solute carrier family 25 (mitochondrial carrier, Aralar), member 12
Tssr24470 2 71317568 to 71317589 21 - TSS region transcription start site region 24470
Tssr18252 2 71319730 to 71319743 13 + TSS region transcription start site region 18252
Gm13641 2 71319783 to 71320255 472 + pseudogene predicted gene 13641
Tssr24471 2 71334084 to 71334109 25 - TSS region transcription start site region 24471
Tssr18253 2 71334217 to 71334234 17 + TSS region transcription start site region 18253
Tssr18254 2 71334630 to 71334635 5 + TSS region transcription start site region 18254
Tssr24472 2 71338199 to 71338253 54 - TSS region transcription start site region 24472
Tssr24473 2 71338443 to 71338481 38 - TSS region transcription start site region 24473
Tssr24474 2 71342840 to 71342854 14 - TSS region transcription start site region 24474
Tssr24475 2 71347822 to 71347851 29 - TSS region transcription start site region 24475
Tssr18255 2 71347955 to 71347974 19 + TSS region transcription start site region 18255
Tssr18256 2 71348507 to 71348544 37 + TSS region transcription start site region 18256
Tssr18257 2 71356648 to 71356652 4 + TSS region transcription start site region 18257
5730410E19Rik 2 71356649 to 71357991 1342 unclassified non-coding RNA gene RIKEN cDNA 5730410E19 gene
Cpgi11738 2 71367188 to 71367910 722 CpG island CpG island 11738
Tssr24476 2 71367537 to 71367561 24 - TSS region transcription start site region 24476
Tssr24477 2 71367566 to 71367577 11 - TSS region transcription start site region 24477
Tssr24478 2 71367773 to 71367797 24 - TSS region transcription start site region 24478
Tssr24479 2 71376721 to 71376764 43 - TSS region transcription start site region 24479
Tssr18258 2 71388047 to 71388066 19 + TSS region transcription start site region 18258
Cpgi11739 2 71388986 to 71389744 758 CpG island CpG island 11739
Tssr24480 2 71389055 to 71389073 18 - TSS region transcription start site region 24480
Tssr24481 2 71389077 to 71389121 44 - TSS region transcription start site region 24481
Tssr18259 2 71389222 to 71389237 15 + TSS region transcription start site region 18259
Tssr18260 2 71389239 to 71389278 39 + TSS region transcription start site region 18260
Hat1 2 71389260 to 71441622 52362 + protein coding gene histone aminotransferase 1
Tssr18261 2 71389415 to 71389446 31 + TSS region transcription start site region 18261
Gm13642 2 71412537 to 71412917 380 - pseudogene predicted gene 13642
Tssr18262 2 71421229 to 71421242 13 + TSS region transcription start site region 18262
Tssr18263 2 71421662 to 71421682 20 + TSS region transcription start site region 18263
Tssr18264 2 71437100 to 71437146 46 + TSS region transcription start site region 18264
Gm23166 2 71450514 to 71450614 100 - snRNA gene predicted gene, 23166
Cpgi11740 2 71453058 to 71453821 763 CpG island CpG island 11740
Metap1d 2 71453281 to 71525196 71915 + protein coding gene methionyl aminopeptidase type 1D (mitochondrial)
Tssr18265 2 71453323 to 71453370 47 + TSS region transcription start site region 18265
Gm23253 2 71495271 to 71495374 103 + snRNA gene predicted gene, 23253
Tssr18266 2 71499584 to 71499603 19 + TSS region transcription start site region 18266
Tssr24482 2 71511285 to 71511289 4 - TSS region transcription start site region 24482
Gm46746 2 71514349 to 71515683 1334 - lncRNA gene predicted gene, 46746
A130022F02Rik 2 71517895 to 71522026 4131 unclassified gene RIKEN cDNA A130022F02 gene
Cpgi11741 2 71527393 to 71527720 327 CpG island CpG island 11741
Dlx1 2 71528113 to 71533981 5868 + protein coding gene distal-less homeobox 1
Cpgi11742 2 71528375 to 71530657 2282 CpG island CpG island 11742
Tssr18267 2 71528517 to 71528530 13 + TSS region transcription start site region 18267
Tssr18268 2 71528538 to 71528547 9 + TSS region transcription start site region 18268
Tssr18269 2 71528603 to 71528645 42 + TSS region transcription start site region 18269
Tssr18270 2 71528657 to 71528668 11 + TSS region transcription start site region 18270
Tssr18271 2 71529078 to 71529084 6 + TSS region transcription start site region 18271
Tssr18272 2 71529085 to 71529110 25 + TSS region transcription start site region 18272
Tssr18273 2 71529548 to 71529564 16 + TSS region transcription start site region 18273
Tssr18274 2 71529589 to 71529601 12 + TSS region transcription start site region 18274
Tssr24483 2 71529655 to 71529668 13 - TSS region transcription start site region 24483
Tssr18275 2 71529798 to 71529807 9 + TSS region transcription start site region 18275
Tssr18276 2 71529814 to 71529841 27 + TSS region transcription start site region 18276
Tssr18277 2 71529900 to 71529903 3 + TSS region transcription start site region 18277
Tssr18278 2 71529922 to 71529936 14 + TSS region transcription start site region 18278
Tssr518 2 71529968 to 71529973 5 + TSS region transcription start site region 518
Tssr24484 2 71530590 to 71530601 11 - TSS region transcription start site region 24484
Dlx1as 2 71530638 to 71537891 7253 - antisense lncRNA gene distal-less homeobox 1, antisense
Tssr18279 2 71530729 to 71530756 27 + TSS region transcription start site region 18279
Tssr18280 2 71530758 to 71530779 21 + TSS region transcription start site region 18280
Cpgi11743 2 71532181 to 71532970 789 CpG island CpG island 11743
Tssr24485 2 71537678 to 71537681 3 - TSS region transcription start site region 24485
Tssr24486 2 71537891 to 71537907 16 - TSS region transcription start site region 24486
Cpgi11744 2 71541024 to 71541697 673 CpG island CpG island 11744
Cpgi11745 2 71542896 to 71543417 521 CpG island CpG island 11745
Dlx2 2 71543408 to 71546754 3346 - protein coding gene distal-less homeobox 2
Tssr24487 2 71543873 to 71543878 5 - TSS region transcription start site region 24487
Cpgi11746 2 71544114 to 71547022 2908 CpG island CpG island 11746
Tssr24488 2 71546136 to 71546148 12 - TSS region transcription start site region 24488
Tssr24489 2 71546344 to 71546367 23 - TSS region transcription start site region 24489
Tssr24490 2 71546368 to 71546399 31 - TSS region transcription start site region 24490
Tssr24491 2 71546401 to 71546469 68 - TSS region transcription start site region 24491
Tssr24492 2 71546484 to 71546498 14 - TSS region transcription start site region 24492
Tssr24493 2 71546745 to 71546758 13 - TSS region transcription start site region 24493
Cpgi11747 2 71551903 to 71552065 162 CpG island CpG island 11747
D2Mit92 2 71579653 to 71579801 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 92
Cpgi11748 2 71580991 to 71581498 507 CpG island CpG island 11748
Gm36857 2 71591329 to 71605750 14421 + lncRNA gene predicted gene, 36857
Cpgi11749 2 71629249 to 71630072 823 CpG island CpG island 11749
Tssr18281 2 71644298 to 71644318 20 + TSS region transcription start site region 18281
Gm36909 2 71655566 to 71657684 2118 + lncRNA gene predicted gene, 36909
Tssr24494 2 71663116 to 71663165 49 - TSS region transcription start site region 24494
Tssr18282 2 71719385 to 71719393 8 + TSS region transcription start site region 18282
Platr26 2 71719417 to 71730966 11549 + lincRNA gene pluripotency associated transcript 26
Gm13647 2 71737815 to 71745397 7582 + lincRNA gene predicted gene 13647
Tssr24495 2 71745740 to 71745772 32 - TSS region transcription start site region 24495
Tssr18283 2 71745824 to 71745861 37 + TSS region transcription start site region 18283
Gm13663 2 71747507 to 71750200 2693 + unclassified non-coding RNA gene predicted gene 13663
Gm17250 2 71748075 to 71750162 2087 - lincRNA gene predicted gene, 17250
Gm13662 2 71749925 to 71759801 9876 + unclassified non-coding RNA gene predicted gene 13662
Tssr24496 2 71750083 to 71750095 12 - TSS region transcription start site region 24496
Tssr24497 2 71750306 to 71750321 15 - TSS region transcription start site region 24497
Gm13739 2 71762238 to 71762767 529 - pseudogene predicted gene 13739
D2Mit11 2 71778844 to 71779068 224 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 11
Cpgi11750 2 71786525 to 71787960 1435 CpG island CpG island 11750
In(2Hoxd11;Itga6)1Ddu 2 71786886 to 74687016 2900130 chromosomal inversion inversion, Chr 2, Denis Duboule 1
In(2Atf2-Itga6)58Ddu 2 71786886 to 73892639 2105753 chromosomal inversion inversion, Chr 2, Denis Duboule 58
Itga6 2 71786886 to 71858427 71541 + protein coding gene integrin alpha 6
In(2Lnp-Itga6)47Ddu 2 71786886 to 74579435 2792549 chromosomal inversion inversion, Chr 2, Denis Duboule 47
In(2Itga6-Evx2)44Ddu 2 71786886 to 74659557 2872671 chromosomal inversion inversion, Chr 2, Denis Duboule 44
Tssr18284 2 71786898 to 71786908 10 + TSS region transcription start site region 18284
Tssr18285 2 71786923 to 71786945 22 + TSS region transcription start site region 18285
Tssr18286 2 71787014 to 71787045 31 + TSS region transcription start site region 18286
Tssr18287 2 71787057 to 71787083 26 + TSS region transcription start site region 18287
Tssr18288 2 71787098 to 71787107 9 + TSS region transcription start site region 18288
Tssr18289 2 71787115 to 71787133 18 + TSS region transcription start site region 18289
Tssr519 2 71787827 to 71787829 2 - TSS region transcription start site region 519
Tssr18290 2 71805973 to 71805985 12 + TSS region transcription start site region 18290
Tssr24498 2 71810183 to 71810189 6 - TSS region transcription start site region 24498
Tssr18291 2 71814246 to 71814256 10 + TSS region transcription start site region 18291
Tssr18292 2 71866127 to 71866132 5 + TSS region transcription start site region 18292
Tssr24499 2 71867551 to 71867584 33 - TSS region transcription start site region 24499
Tssr18293 2 71867754 to 71867759 5 + TSS region transcription start site region 18293
Tssr24500 2 71868306 to 71868326 20 - TSS region transcription start site region 24500
Tssr18294 2 71868507 to 71868513 6 + TSS region transcription start site region 18294
Tssr18295 2 71868514 to 71868526 12 + TSS region transcription start site region 18295
Cpgi11751 2 71872769 to 71874074 1305 CpG island CpG island 11751
Tssr24501 2 71873050 to 71873092 42 - TSS region transcription start site region 24501
Pdk1 2 71873224 to 71903858 30634 + protein coding gene pyruvate dehydrogenase kinase, isoenzyme 1
Tssr18296 2 71873258 to 71873263 5 + TSS region transcription start site region 18296
Tssr18297 2 71873266 to 71873272 6 + TSS region transcription start site region 18297
Tssr18298 2 71873278 to 71873326 48 + TSS region transcription start site region 18298
Tssr520 2 71873345 to 71873346 1 + TSS region transcription start site region 520
Tssr18299 2 71873346 to 71873349 3 + TSS region transcription start site region 18299
Tssr18300 2 71873365 to 71873374 9 + TSS region transcription start site region 18300
Tssr18301 2 71875081 to 71875090 9 + TSS region transcription start site region 18301
Gm46785 2 71937836 to 71942033 4197 + lncRNA gene predicted gene, 46785
Gm13746 2 71956053 to 71957368 1315 + lincRNA gene predicted gene 13746
Gm39845 2 71957659 to 71968836 11177 + lncRNA gene predicted gene, 39845
D2Mit328 2 71963824 to 71964058 234 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 328
Cpgi11752 2 71980750 to 71981754 1004 CpG island CpG island 11752
Tssr18302 2 71980986 to 71980995 9 + TSS region transcription start site region 18302
Tssr521 2 71981042 to 71981059 17 + TSS region transcription start site region 521
Tssr18303 2 71981060 to 71981071 11 + TSS region transcription start site region 18303
Tssr18304 2 71981184 to 71981285 101 + TSS region transcription start site region 18304
Rapgef4 2 71981240 to 72257474 276234 + protein coding gene Rap guanine nucleotide exchange factor (GEF) 4