Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:69794923-71157726

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phospho2 2 69789628 to 69797223 7595 + protein coding gene phosphatase, orphan 2
Gm13624 2 69799151 to 69799612 461 - pseudogene predicted gene 13624
Tssr24450 2 69799687 to 69799688 1 - TSS region transcription start site region 24450
Gm39841 2 69801831 to 69805002 3171 + lncRNA gene predicted gene, 39841
Tssr18161 2 69821676 to 69821696 20 + TSS region transcription start site region 18161
Tssr18162 2 69821810 to 69821857 47 + TSS region transcription start site region 18162
Tssr18163 2 69821914 to 69821934 20 + TSS region transcription start site region 18163
Tssr18164 2 69821940 to 69821991 51 + TSS region transcription start site region 18164
Klhl23 2 69821944 to 69836651 14707 + protein coding gene kelch-like 23
Tssr18165 2 69821996 to 69822007 11 + TSS region transcription start site region 18165
Tssr18166 2 69822025 to 69822034 9 + TSS region transcription start site region 18166
Cpgi11718 2 69822389 to 69823550 1161 CpG island CpG island 11718
Tssr18167 2 69822441 to 69822511 70 + TSS region transcription start site region 18167
Tssr18168 2 69822530 to 69822545 15 + TSS region transcription start site region 18168
Tssr18169 2 69822714 to 69822776 62 + TSS region transcription start site region 18169
Tssr18170 2 69822797 to 69822870 73 + TSS region transcription start site region 18170
Tssr18171 2 69822950 to 69822969 19 + TSS region transcription start site region 18171
Tssr18172 2 69822975 to 69822998 23 + TSS region transcription start site region 18172
Cpgi11719 2 69861227 to 69862145 918 CpG island CpG island 11719
Ssb 2 69861562 to 69871846 10284 + protein coding gene Sjogren syndrome antigen B
Tssr18173 2 69861577 to 69861584 7 + TSS region transcription start site region 18173
Tssr18174 2 69861585 to 69861635 50 + TSS region transcription start site region 18174
Tssr18175 2 69861638 to 69861653 15 + TSS region transcription start site region 18175
Tssr18176 2 69862175 to 69862178 3 + TSS region transcription start site region 18176
Tssr18177 2 69867448 to 69867462 14 + TSS region transcription start site region 18177
Tssr18178 2 69867490 to 69867528 38 + TSS region transcription start site region 18178
Tssr18179 2 69869916 to 69869932 16 + TSS region transcription start site region 18179
Tssr18180 2 69870379 to 69870393 14 + TSS region transcription start site region 18180
Tssr18181 2 69870404 to 69870424 20 + TSS region transcription start site region 18181
Tssr18182 2 69870671 to 69870712 41 + TSS region transcription start site region 18182
Mettl5 2 69871198 to 69885615 14417 - protein coding gene methyltransferase like 5
Gm13625 2 69871412 to 69872202 790 - unclassified non-coding RNA gene predicted gene 13625
Cpgi11720 2 69885233 to 69885989 756 CpG island CpG island 11720
Tssr24451 2 69885557 to 69885630 73 - TSS region transcription start site region 24451
Mettl5os 2 69885728 to 69888155 2427 + antisense lncRNA gene methyltransferase like 5, opposite strand
Cpgi11721 2 69897011 to 69898219 1208 CpG island CpG island 11721
Tssr18183 2 69897194 to 69897206 12 + TSS region transcription start site region 18183
Tssr18184 2 69897220 to 69897247 27 + TSS region transcription start site region 18184
Ubr3 2 69897246 to 70024013 126767 + protein coding gene ubiquitin protein ligase E3 component n-recognin 3
Tssr18185 2 69897255 to 69897294 39 + TSS region transcription start site region 18185
D2Mit349 2 69899905 to 69900035 130 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 349
D2Mit473 2 69899920 to 69900035 115 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 473
Tssr18186 2 69930528 to 69930536 8 + TSS region transcription start site region 18186
Gm13631 2 70038911 to 70042406 3495 + unclassified non-coding RNA gene predicted gene 13631
Tssr18187 2 70039114 to 70039125 11 + TSS region transcription start site region 18187
Myo3b 2 70039126 to 70429195 390069 + protein coding gene myosin IIIB
Tssr18188 2 70039267 to 70039306 39 + TSS region transcription start site region 18188
Tssr18189 2 70070033 to 70070076 43 + TSS region transcription start site region 18189
Tssr24452 2 70089714 to 70089736 22 - TSS region transcription start site region 24452
Tssr18190 2 70091926 to 70091931 5 + TSS region transcription start site region 18190
Tssr18191 2 70094971 to 70094984 13 + TSS region transcription start site region 18191
Tssr516 2 70135351 to 70135374 23 + TSS region transcription start site region 516
Tssr18192 2 70142970 to 70142975 5 + TSS region transcription start site region 18192
Tssr18193 2 70215815 to 70215822 7 + TSS region transcription start site region 18193
Gm46744 2 70408792 to 70427658 18866 - lncRNA gene predicted gene, 46744
D2Mit489.1 2 70413305 to 70413415 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 489.1
Tssr18194 2 70458945 to 70458956 11 + TSS region transcription start site region 18194
Rpl9-ps7 2 70458982 to 70459560 578 + pseudogene ribosomal protein L9, pseudogene 7
Cpgi11722 2 70471761 to 70472399 638 CpG island CpG island 11722
Cpgi11723 2 70473410 to 70474662 1252 CpG island CpG island 11723
Sp5 2 70474923 to 70477726 2803 + protein coding gene trans-acting transcription factor 5
Cpgi11724 2 70474980 to 70477383 2403 CpG island CpG island 11724
Tssr18195 2 70475111 to 70475127 16 + TSS region transcription start site region 18195
Tssr18196 2 70475955 to 70475969 14 + TSS region transcription start site region 18196
Tssr18197 2 70475983 to 70476004 21 + TSS region transcription start site region 18197
Tssr18198 2 70476051 to 70476092 41 + TSS region transcription start site region 18198
Tssr517 2 70476162 to 70476200 38 + TSS region transcription start site region 517
Gad1os 2 70489940 to 70563357 73417 - antisense lncRNA gene glutamate decarboxylase 1, opposite strand
Erich2os 2 70503433 to 70509199 5766 - antisense lncRNA gene glutamate rich 2, opposite strand
Tssr18199 2 70508662 to 70508680 18 + TSS region transcription start site region 18199
Tssr18200 2 70508697 to 70508706 9 + TSS region transcription start site region 18200
Tssr18201 2 70508813 to 70508824 11 + TSS region transcription start site region 18201
Erich2 2 70508819 to 70540884 32065 + protein coding gene glutamate rich 2
Cpgi11725 2 70508828 to 70509813 985 CpG island CpG island 11725
Tssr18202 2 70508832 to 70508839 7 + TSS region transcription start site region 18202
Tssr24453 2 70509206 to 70509219 13 - TSS region transcription start site region 24453
Tssr24454 2 70509267 to 70509293 26 - TSS region transcription start site region 24454
Tssr18203 2 70509344 to 70509382 38 + TSS region transcription start site region 18203
Tssr18204 2 70509421 to 70509470 49 + TSS region transcription start site region 18204
Tssr18205 2 70509490 to 70509502 12 + TSS region transcription start site region 18205
Gm37026 2 70523042 to 70523767 725 - unclassified gene predicted gene, 37026
Tssr18206 2 70533024 to 70533034 10 + TSS region transcription start site region 18206
Tssr18207 2 70533057 to 70533079 22 + TSS region transcription start site region 18207
Cpgi11726 2 70561160 to 70561625 465 CpG island CpG island 11726
Tssr18208 2 70561258 to 70561268 10 + TSS region transcription start site region 18208
Tssr18209 2 70561284 to 70561307 23 + TSS region transcription start site region 18209
Tssr18210 2 70561506 to 70561526 20 + TSS region transcription start site region 18210
Gad1 2 70561765 to 70602014 40249 + protein coding gene glutamate decarboxylase 1
Cpgi11727 2 70561928 to 70564134 2206 CpG island CpG island 11727
Tssr18211 2 70561986 to 70562003 17 + TSS region transcription start site region 18211
Tssr18212 2 70562007 to 70562037 30 + TSS region transcription start site region 18212
Tssr18213 2 70562112 to 70562123 11 + TSS region transcription start site region 18213
Tssr18214 2 70562132 to 70562143 11 + TSS region transcription start site region 18214
Tssr18215 2 70562147 to 70562208 61 + TSS region transcription start site region 18215
Tssr18216 2 70562854 to 70562871 17 + TSS region transcription start site region 18216
Tssr18217 2 70563318 to 70563330 12 + TSS region transcription start site region 18217
Tssr18218 2 70563373 to 70563433 60 + TSS region transcription start site region 18218
Tssr18219 2 70563435 to 70563461 26 + TSS region transcription start site region 18219
Tssr18220 2 70563536 to 70563547 11 + TSS region transcription start site region 18220
Tssr18221 2 70563551 to 70563572 21 + TSS region transcription start site region 18221
Tssr18222 2 70563629 to 70563663 34 + TSS region transcription start site region 18222
Tssr18223 2 70563677 to 70563709 32 + TSS region transcription start site region 18223
Cpgi11728 2 70566438 to 70566923 485 CpG island CpG island 11728
Cpgi11729 2 70568436 to 70568875 439 CpG island CpG island 11729
Tssr18224 2 70601723 to 70601762 39 + TSS region transcription start site region 18224
Gm16510 2 70618628 to 70618876 248 - pseudogene predicted pseudogene 16510
Gm46745 2 70620510 to 70623179 2669 - lncRNA gene predicted gene, 46745
Cpgi11730 2 70661038 to 70662400 1362 CpG island CpG island 11730
Gm26558 2 70661248 to 70662108 860 - protein coding gene predicted gene, 26558
Tssr18225 2 70661455 to 70661460 5 + TSS region transcription start site region 18225
Tssr18226 2 70661478 to 70661482 4 + TSS region transcription start site region 18226
Tssr18227 2 70661487 to 70661494 7 + TSS region transcription start site region 18227
Tssr18228 2 70661501 to 70661552 51 + TSS region transcription start site region 18228
Gorasp2 2 70661509 to 70691725 30216 + protein coding gene golgi reassembly stacking protein 2
Tssr18229 2 70661556 to 70661692 136 + TSS region transcription start site region 18229
Tssr18230 2 70672474 to 70672491 17 + TSS region transcription start site region 18230
Tssr18231 2 70678038 to 70678052 14 + TSS region transcription start site region 18231
Tssr18232 2 70690367 to 70690390 23 + TSS region transcription start site region 18232
Tssr18233 2 70690408 to 70690419 11 + TSS region transcription start site region 18233
Tssr18234 2 70690654 to 70690684 30 + TSS region transcription start site region 18234
Gm38528 2 70704093 to 70712644 8551 + lncRNA gene predicted gene, 38528
Cpgi11731 2 70704453 to 70704818 365 CpG island CpG island 11731
Tlk1 2 70712407 to 70825728 113321 - protein coding gene tousled-like kinase 1
Tssr24455 2 70726131 to 70726136 5 - TSS region transcription start site region 24455
Tssr24456 2 70746023 to 70746043 20 - TSS region transcription start site region 24456
D2Mit56 2 70750116 to 70750234 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 56
Tssr24457 2 70753318 to 70753323 5 - TSS region transcription start site region 24457
5830411J07Rik 2 70821659 to 70823432 1773 unclassified non-coding RNA gene RIKEN cDNA 5830411J07 gene
Tssr24458 2 70823411 to 70823415 4 - TSS region transcription start site region 24458
Tssr24459 2 70824689 to 70824694 5 - TSS region transcription start site region 24459
Cpgi11732 2 70824763 to 70826064 1301 CpG island CpG island 11732
Tssr24460 2 70825403 to 70825455 52 - TSS region transcription start site region 24460
Tssr24461 2 70825484 to 70825524 40 - TSS region transcription start site region 24461
Tssr24462 2 70825578 to 70825618 40 - TSS region transcription start site region 24462
Tssr24463 2 70825674 to 70825725 51 - TSS region transcription start site region 24463
Tssr24464 2 70825726 to 70825820 94 - TSS region transcription start site region 24464
Tssr24465 2 70825894 to 70825934 40 - TSS region transcription start site region 24465
Gm39842 2 70838881 to 70842814 3933 + lncRNA gene predicted gene, 39842
Tssr18235 2 70843540 to 70843551 11 + TSS region transcription start site region 18235
Gm13633 2 70856791 to 70857650 859 + pseudogene predicted gene 13633
D2Mit434 2 70872814 to 70872928 114 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 434
Gm13632 2 70877829 to 70884408 6579 + lincRNA gene predicted gene 13632
Gm39843 2 70923106 to 70937331 14225 + lncRNA gene predicted gene, 39843
Tssr18236 2 70931132 to 70931166 34 + TSS region transcription start site region 18236
Cpgi11733 2 70938586 to 70939125 539 CpG island CpG island 11733
Mettl8 2 70964561 to 71055583 91022 - protein coding gene methyltransferase like 8
D2Mit514 2 71021423 to 71021561 138 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-514
Tssr24466 2 71044973 to 71044981 8 - TSS region transcription start site region 24466
Dcaf17 2 71055328 to 71099142 43814 + protein coding gene DDB1 and CUL4 associated factor 17
Cpgi11734 2 71055347 to 71056337 990 CpG island CpG island 11734
Tssr24467 2 71055504 to 71055513 9 - TSS region transcription start site region 24467
Tssr24468 2 71055516 to 71055529 13 - TSS region transcription start site region 24468
Tssr24469 2 71055534 to 71055611 77 - TSS region transcription start site region 24469
Tssr18237 2 71055731 to 71055816 85 + TSS region transcription start site region 18237
Tssr18238 2 71084169 to 71084180 11 + TSS region transcription start site region 18238
Cpgi11735 2 71117808 to 71118716 908 CpG island CpG island 11735
Tssr18239 2 71118039 to 71118061 22 + TSS region transcription start site region 18239
Cybrd1 2 71118054 to 71142926 24872 + protein coding gene cytochrome b reductase 1
Tssr18240 2 71118075 to 71118096 21 + TSS region transcription start site region 18240
Tssr18241 2 71118104 to 71118113 9 + TSS region transcription start site region 18241
Tssr18242 2 71129775 to 71129801 26 + TSS region transcription start site region 18242
Gm39576 2 71155197 to 71159092 3895 + lncRNA gene predicted gene, 39576