Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:66547558-67338050

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Hdl8 2 38239713 to 67242263 29002550 QTL high density lipoprotein (HDL) level 8
Pvldlc1 2 38239713 to 67242263 29002550 QTL plasma VLDL-cholesterol 1
Lanq1 2 38239713 to 67242263 29002550 QTL lanosterol level QTL 1
Scn9a 2 66480080 to 66634962 154882 - protein coding gene sodium channel, voltage-gated, type IX, alpha
Gm23046 2 66602515 to 66602798 283 + unclassified non-coding RNA gene predicted gene, 23046
Gm35265 2 66634421 to 66649849 15428 + lncRNA gene predicted gene, 35265
Cpgi11704 2 66634581 to 66635029 448 CpG island CpG island 11704
Tssr24384 2 66634683 to 66634741 58 - TSS region transcription start site region 24384
Scn7a 2 66673426 to 66784910 111484 - protein coding gene sodium channel, voltage-gated, type VII, alpha
Tssr24385 2 66674850 to 66674855 5 - TSS region transcription start site region 24385
Tssr24386 2 66682700 to 66682705 5 - TSS region transcription start site region 24386
Tssr24387 2 66686180 to 66686189 9 - TSS region transcription start site region 24387
D2Mit91 2 66725932 to 66726109 177 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 91
Tssr24388 2 66730191 to 66730193 2 - TSS region transcription start site region 24388
Tssr24389 2 66750634 to 66750635 1 - TSS region transcription start site region 24389
Tssr24390 2 66784903 to 66784920 17 - TSS region transcription start site region 24390
Tssr24391 2 66784922 to 66784949 27 - TSS region transcription start site region 24391
Tssr24392 2 66785007 to 66785023 16 - TSS region transcription start site region 24392
Tssr24393 2 66785237 to 66785248 11 - TSS region transcription start site region 24393
Gm13600 2 66863262 to 66864775 1513 + pseudogene predicted gene 13600
Gm13602 2 66942558 to 66943050 492 + pseudogene predicted gene 13602
Gm13598 2 67157646 to 67194735 37089 - lincRNA gene predicted gene 13598
Tssr18002 2 67169248 to 67169250 2 + TSS region transcription start site region 18002
Gm1322 2 67173834 to 67184950 11116 + lincRNA gene predicted gene 1322
Tssr18003 2 67173864 to 67173877 13 + TSS region transcription start site region 18003
Tssr18004 2 67173884 to 67173894 10 + TSS region transcription start site region 18004
Tssr18005 2 67173899 to 67173910 11 + TSS region transcription start site region 18005
Tssr511 2 67173949 to 67173997 48 + TSS region transcription start site region 511
D2Dcr135 2 67184054 to 67184155 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 135
Tssr24394 2 67194695 to 67194736 41 - TSS region transcription start site region 24394
Tssr512 2 67208471 to 67208472 1 + TSS region transcription start site region 512
Gm13599 2 67309659 to 67396491 86832 - antisense lncRNA gene predicted gene 13599
Tssr18006 2 67318566 to 67318569 3 + TSS region transcription start site region 18006