Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:65558884-68788894

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia23 2 12124726 to 66726109 54601383 QTL collagen induced arthritis QTL 23
Pvldlc1 2 38239713 to 67242263 29002550 QTL plasma VLDL-cholesterol 1
Hdl8 2 38239713 to 67242263 29002550 QTL high density lipoprotein (HDL) level 8
Lanq1 2 38239713 to 67242263 29002550 QTL lanosterol level QTL 1
Alcp1 2 45338116 to 68008524 22670408 QTL alcohol preference locus 1, male specific
nm3 2 63922078 to 68092934 4170856 heritable phenotypic marker neurological mutant 3
Scn3a 2 65457118 to 65567527 110409 - protein coding gene sodium channel, voltage-gated, type III, alpha
Gm34833 2 65552664 to 65585288 32624 + lncRNA gene predicted gene, 34833
Tssr24366 2 65567292 to 65567309 17 - TSS region transcription start site region 24366
Tssr24367 2 65567310 to 65567336 26 - TSS region transcription start site region 24367
Tssr24368 2 65567465 to 65567495 30 - TSS region transcription start site region 24368
Tssr24369 2 65567505 to 65567527 22 - TSS region transcription start site region 24369
Tssr17985 2 65620757 to 65620826 69 + TSS region transcription start site region 17985
Scn2a 2 65620771 to 65767447 146676 + protein coding gene sodium channel, voltage-gated, type II, alpha
Tssr17986 2 65620829 to 65620834 5 + TSS region transcription start site region 17986
Tssr17987 2 65620934 to 65620945 11 + TSS region transcription start site region 17987
Tssr17988 2 65620962 to 65620974 12 + TSS region transcription start site region 17988
D2Mit90 2 65665877 to 65665960 83 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 90
Tssr17989 2 65668730 to 65668746 16 + TSS region transcription start site region 17989
Tssr17990 2 65668753 to 65668769 16 + TSS region transcription start site region 17990
Tssr17991 2 65765282 to 65765289 7 + TSS region transcription start site region 17991
Tssr17992 2 65845735 to 65845744 9 + TSS region transcription start site region 17992
Csrnp3 2 65845767 to 66031546 185779 + protein coding gene cysteine-serine-rich nuclear protein 3
Tssr17993 2 65845785 to 65845799 14 + TSS region transcription start site region 17993
Tssr17994 2 65845833 to 65845850 17 + TSS region transcription start site region 17994
Gm13619 2 65852408 to 65860619 8211 - antisense lncRNA gene predicted gene 13619
Cpgi11700 2 65872421 to 65872575 154 CpG island CpG island 11700
Tssr17995 2 65930092 to 65930116 24 + TSS region transcription start site region 17995
Tssr17996 2 65930117 to 65930190 73 + TSS region transcription start site region 17996
Tssr17997 2 65930193 to 65930216 23 + TSS region transcription start site region 17997
Tssr17998 2 65932070 to 65932100 30 + TSS region transcription start site region 17998
Gm13617 2 65944299 to 65954070 9771 - antisense lncRNA gene predicted gene 13617
Cpgi11701 2 66019491 to 66019714 223 CpG island CpG island 11701
Tssr17999 2 66021604 to 66021614 10 + TSS region transcription start site region 17999
Galnt3 2 66082766 to 66124994 42228 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 3
Tssr24370 2 66102577 to 66102590 13 - TSS region transcription start site region 24370
Cpgi11702 2 66123913 to 66125347 1434 CpG island CpG island 11702
Tssr24371 2 66124714 to 66124764 50 - TSS region transcription start site region 24371
Tssr24372 2 66124767 to 66124804 37 - TSS region transcription start site region 24372
Tssr24373 2 66124845 to 66124852 7 - TSS region transcription start site region 24373
Tssr24374 2 66125130 to 66125143 13 - TSS region transcription start site region 24374
Gm28638 2 66125317 to 66175250 49933 + lincRNA gene predicted gene 28638
Gm13616 2 66145654 to 66145875 221 - pseudogene predicted gene 13616
Tssr24375 2 66165380 to 66165386 6 - TSS region transcription start site region 24375
Ttc21b 2 66184327 to 66256617 72290 - protein coding gene tetratricopeptide repeat domain 21B
Gm13618 2 66187836 to 66192813 4977 + antisense lncRNA gene predicted gene 13618
Tssr24376 2 66210180 to 66210184 4 - TSS region transcription start site region 24376
Cpgi11703 2 66256234 to 66256874 640 CpG island CpG island 11703
Tssr24377 2 66256576 to 66256645 69 - TSS region transcription start site region 24377
Scn1a 2 66270782 to 66440837 170055 - protein coding gene sodium channel, voltage-gated, type I, alpha
Tssr24378 2 66271219 to 66271222 3 - TSS region transcription start site region 24378
A230059G12Rik 2 66371836 to 66376010 4174 unclassified non-coding RNA gene RIKEN cDNA A230059G12 gene
Tssr24379 2 66409931 to 66409948 17 - TSS region transcription start site region 24379
Tssr24380 2 66410083 to 66410134 51 - TSS region transcription start site region 24380
Gm13630 2 66412673 to 66421589 8916 + lncRNA gene predicted gene 13630
Tssr24381 2 66440753 to 66440846 93 - TSS region transcription start site region 24381
Tssr18000 2 66440856 to 66440905 49 + TSS region transcription start site region 18000
Gm13629 2 66440880 to 66546026 105146 + antisense lncRNA gene predicted gene 13629
Tssr24382 2 66440895 to 66440905 10 - TSS region transcription start site region 24382
Tssr18001 2 66440913 to 66440929 16 + TSS region transcription start site region 18001
Tssr24383 2 66441149 to 66441162 13 - TSS region transcription start site region 24383
Rpl35-ps1 2 66447036 to 66447407 371 - pseudogene ribosomal protein L35, pseudogene 1
Scn9a 2 66480080 to 66634962 154882 - protein coding gene sodium channel, voltage-gated, type IX, alpha
Gm13627 2 66529414 to 66530746 1332 - pseudogene predicted gene 13627
Gm23046 2 66602515 to 66602798 283 + unclassified non-coding RNA gene predicted gene, 23046
Gm35265 2 66634421 to 66649849 15428 + lncRNA gene predicted gene, 35265
Cpgi11704 2 66634581 to 66635029 448 CpG island CpG island 11704
Tssr24384 2 66634683 to 66634741 58 - TSS region transcription start site region 24384
Scn7a 2 66673426 to 66784910 111484 - protein coding gene sodium channel, voltage-gated, type VII, alpha
Tssr24385 2 66674850 to 66674855 5 - TSS region transcription start site region 24385
Tssr24386 2 66682700 to 66682705 5 - TSS region transcription start site region 24386
Tssr24387 2 66686180 to 66686189 9 - TSS region transcription start site region 24387
D2Mit91 2 66725932 to 66726109 177 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 91
Tssr24388 2 66730191 to 66730193 2 - TSS region transcription start site region 24388
Tssr24389 2 66750634 to 66750635 1 - TSS region transcription start site region 24389
Tssr24390 2 66784903 to 66784920 17 - TSS region transcription start site region 24390
Tssr24391 2 66784922 to 66784949 27 - TSS region transcription start site region 24391
Tssr24392 2 66785007 to 66785023 16 - TSS region transcription start site region 24392
Tssr24393 2 66785237 to 66785248 11 - TSS region transcription start site region 24393
Gm13600 2 66863262 to 66864775 1513 + pseudogene predicted gene 13600
Gm13602 2 66942558 to 66943050 492 + pseudogene predicted gene 13602
Gm13598 2 67157646 to 67194735 37089 - lincRNA gene predicted gene 13598
Tssr18002 2 67169248 to 67169250 2 + TSS region transcription start site region 18002
Gm1322 2 67173834 to 67184950 11116 + lincRNA gene predicted gene 1322
Tssr18003 2 67173864 to 67173877 13 + TSS region transcription start site region 18003
Tssr18004 2 67173884 to 67173894 10 + TSS region transcription start site region 18004
Tssr18005 2 67173899 to 67173910 11 + TSS region transcription start site region 18005
Tssr511 2 67173949 to 67173997 48 + TSS region transcription start site region 511
D2Dcr135 2 67184054 to 67184155 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 135
Tssr24394 2 67194695 to 67194736 41 - TSS region transcription start site region 24394
Tssr512 2 67208471 to 67208472 1 + TSS region transcription start site region 512
Gm13599 2 67309659 to 67396491 86832 - antisense lncRNA gene predicted gene 13599
Tssr18006 2 67318566 to 67318569 3 + TSS region transcription start site region 18006
Gm21830 2 67413725 to 67433086 19361 + protein coding gene predicted gene, 21830
Gm23328 2 67420031 to 67420162 131 + snoRNA gene predicted gene, 23328
Gm26727 2 67432816 to 67433181 365 - protein coding gene predicted gene, 26727
Tssr18007 2 67445975 to 67445983 8 + TSS region transcription start site region 18007
Tssr18008 2 67445994 to 67446009 15 + TSS region transcription start site region 18008
Xirp2 2 67446002 to 67526614 80612 + protein coding gene xin actin-binding repeat containing 2
D2Jcs24 2 67468519 to 67468808 289 DNA segment DNA segment, Chr 2, John C. Schimenti 24
Gm13601 2 67491044 to 67516525 25481 - antisense lncRNA gene predicted gene 13601
Tssr18009 2 67508143 to 67508149 6 + TSS region transcription start site region 18009
Tssr24395 2 67516469 to 67516476 7 - TSS region transcription start site region 24395
Tssr24396 2 67516495 to 67516509 14 - TSS region transcription start site region 24396
Cpgi11705 2 67565121 to 67566738 1617 CpG island CpG island 11705
Tssr18010 2 67565680 to 67565773 93 + TSS region transcription start site region 18010
B3galt1 2 67565871 to 68122689 556818 + protein coding gene UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
Tssr24397 2 67573994 to 67573999 5 - TSS region transcription start site region 24397
Tssr18011 2 67602051 to 67602066 15 + TSS region transcription start site region 18011
Tssr18012 2 67628722 to 67628746 24 + TSS region transcription start site region 18012
Tssr18013 2 67648745 to 67648759 14 + TSS region transcription start site region 18013
Tssr18014 2 67648775 to 67648787 12 + TSS region transcription start site region 18014
Tssr18015 2 67653990 to 67653995 5 + TSS region transcription start site region 18015
B230216C01Rik 2 67654149 to 67658434 4285 unclassified gene RIKEN cDNA B230216C01 gene
Tssr18016 2 67654165 to 67654169 4 + TSS region transcription start site region 18016
Tssr18017 2 67670188 to 67670191 3 + TSS region transcription start site region 18017
Mir7224 2 67675457 to 67675516 59 + miRNA gene microRNA 7224
Gm26743 2 67677031 to 67687282 10251 - lincRNA gene predicted gene, 26743
Gm13604 2 67707290 to 67707771 481 - pseudogene predicted gene 13604
D2Mit325 2 67761596 to 67761770 174 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 325
Hrtfm1 2 67761596 to 75134589 7372993 QTL heart failure modifier 1
Gm13603 2 67765977 to 67766059 82 + pseudogene predicted gene 13603
Mir6335 2 67781043 to 67781140 97 + miRNA gene microRNA 6335
Gm37964 2 67898596 to 67903500 4904 + unclassified gene predicted gene, 37964
Tssr18018 2 67970658 to 67970665 7 + TSS region transcription start site region 18018
Tssr18019 2 67971247 to 67971262 15 + TSS region transcription start site region 18019
Lymph1 2 67988970 to 67988970 0 QTL lymphocyte differential 1
D2Mit125 2 68008381 to 68008524 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 125
Tssr18020 2 68013634 to 68013637 3 + TSS region transcription start site region 18020
Gm13607 2 68081791 to 68082329 538 + pseudogene predicted gene 13607
Taste1 2 68092831 to 68092934 103 QTL taste-saccharin preference 1
D2Mit379 2 68092831 to 68092934 103 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 379
D2Ucl23 2 68181652 to 68181858 206 DNA segment DNA segment, Chr 2, University College London 23
Stk39 2 68210445 to 68471981 261536 - protein coding gene serine/threonine kinase 39
Tssr24398 2 68233028 to 68233047 19 - TSS region transcription start site region 24398
Tssr24399 2 68238906 to 68238910 4 - TSS region transcription start site region 24399
Tssr24400 2 68251310 to 68251332 22 - TSS region transcription start site region 24400
Tssr24401 2 68251348 to 68251356 8 - TSS region transcription start site region 24401
Tssr24402 2 68366487 to 68366506 19 - TSS region transcription start site region 24402
Tssr24403 2 68366517 to 68366538 21 - TSS region transcription start site region 24403
Tssr24404 2 68378290 to 68378333 43 - TSS region transcription start site region 24404
Tssr24405 2 68386675 to 68386693 18 - TSS region transcription start site region 24405
Tssr24406 2 68389484 to 68389488 4 - TSS region transcription start site region 24406
Tssr24407 2 68409334 to 68409338 4 - TSS region transcription start site region 24407
Tssr24408 2 68415858 to 68415864 6 - TSS region transcription start site region 24408
Tssr18021 2 68421206 to 68421236 30 + TSS region transcription start site region 18021
Tssr24409 2 68426933 to 68426954 21 - TSS region transcription start site region 24409
Cpgi11706 2 68470812 to 68472658 1846 CpG island CpG island 11706
Tssr18022 2 68470844 to 68470855 11 + TSS region transcription start site region 18022
Tssr24410 2 68471878 to 68471911 33 - TSS region transcription start site region 24410
Tssr24411 2 68471925 to 68471944 19 - TSS region transcription start site region 24411
Tssr24412 2 68471945 to 68471994 49 - TSS region transcription start site region 24412
Tssr24413 2 68472002 to 68472118 116 - TSS region transcription start site region 24413
Tssr24414 2 68472120 to 68472137 17 - TSS region transcription start site region 24414
Tssr24415 2 68472138 to 68472145 7 - TSS region transcription start site region 24415
Tssr24416 2 68472279 to 68472317 38 - TSS region transcription start site region 24416
Gm13596 2 68476082 to 68477752 1670 + antisense lncRNA gene predicted gene 13596
Gm26321 2 68484143 to 68484384 241 + unclassified non-coding RNA gene predicted gene, 26321
Tssr18023 2 68554495 to 68554502 7 + TSS region transcription start site region 18023
Gm13597 2 68554555 to 68554929 374 + pseudogene predicted gene 13597
Tssr24417 2 68565375 to 68565387 12 - TSS region transcription start site region 24417
Tssr24418 2 68565394 to 68565398 4 - TSS region transcription start site region 24418
Tssr24419 2 68565403 to 68565417 14 - TSS region transcription start site region 24419
Tssr18024 2 68565657 to 68565676 19 + TSS region transcription start site region 18024
Gm49461 2 68566442 to 68574848 8406 + pseudogene predicted gene, 49461
Gm49462 2 68566992 to 68568555 1563 - lincRNA gene predicted gene, 49462
Tssr18025 2 68568562 to 68568571 9 + TSS region transcription start site region 18025
Tssr18026 2 68568577 to 68568584 7 + TSS region transcription start site region 18026
Tssr18027 2 68568592 to 68568649 57 + TSS region transcription start site region 18027
Gm36002 2 68578602 to 68582260 3658 - bidirectional promoter lncRNA gene predicted gene, 36002
Tssr24420 2 68582305 to 68582350 45 - TSS region transcription start site region 24420
Tssr18028 2 68582409 to 68582416 7 + TSS region transcription start site region 18028
4933409G03Rik 2 68582413 to 68616463 34050 + protein coding gene RIKEN cDNA 4933409G03 gene
Tssr18029 2 68582428 to 68582457 29 + TSS region transcription start site region 18029
4932414N04Rik 2 68656791 to 68748526 91735 + protein coding gene RIKEN cDNA 4932414N04 gene
Tssr18030 2 68726888 to 68726913 25 + TSS region transcription start site region 18030